Comparative genomics and expression levels of hydrophobins from eight mycorrhizal genomes.
Identifieur interne : 000E06 ( Main/Corpus ); précédent : 000E05; suivant : 000E07Comparative genomics and expression levels of hydrophobins from eight mycorrhizal genomes.
Auteurs : F. Rineau ; H. Lmalem ; D. Ahren ; F. Shah ; T. Johansson ; L. Coninx ; J. Ruytinx ; H. Nguyen ; I. Grigoriev ; A. Kuo ; A. Kohler ; E. Morin ; J. Vangronsveld ; F. Martin ; J V ColpaertSource :
- Mycorrhiza [ 1432-1890 ] ; 2017.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : Fungal Proteins.
- genetics : Mycorrhizae.
- Gene Duplication, Genome, Fungal, Genomics, Mycelium.
Abstract
Hydrophobins are small secreted proteins that are present as several gene copies in most fungal genomes. Their properties are now well understood: they are amphiphilic and assemble at hydrophilic/hydrophobic interfaces. However, their physiological functions remain largely unexplored, especially within mycorrhizal fungi. In this study, we identified hydrophobin genes and analysed their distribution in eight mycorrhizal genomes. We then measured their expression levels in three different biological conditions (mycorrhizal tissue vs. free-living mycelium, organic vs. mineral growth medium and aerial vs. submerged growth). Results confirmed that the size of the hydrophobin repertoire increased in the terminal orders of the fungal evolutionary tree. Reconciliation analysis predicted that in 41% of the cases, hydrophobins evolved from duplication events. Whatever the treatment and the fungal species, the pattern of expression of hydrophobins followed a reciprocal function, with one gene much more expressed than others from the same repertoire. These most-expressed hydrophobin genes were also among the most expressed of the whole genome, which suggests that they play a role as structural proteins. The fine-tuning of the expression of hydrophobin genes in each condition appeared complex because it differed considerably between species, in a way that could not be explained by simple ecological traits. Hydrophobin gene regulation in mycorrhizal tissue as compared with free-living mycelium, however, was significantly associated with a calculated high exposure of hydrophilic residues.
DOI: 10.1007/s00572-016-0758-4
PubMed: 28066872
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pubmed:28066872Le document en format XML
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Martin</name><affiliation><nlm:affiliation>Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), Institut National de la Recherche Agronomique (INRA), UMR 1136, Champenoux, France.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Laboratory of Excellence ARBRE, University of Lorraine, UMR 1136, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Colpaert, J V" sort="Colpaert, J V" uniqKey="Colpaert J" first="J V" last="Colpaert">J V Colpaert</name><affiliation><nlm:affiliation>Centre for Environmental Sciences, Environmental Biology group, UHasselt, Hasselt, Belgium.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2017">2017</date><idno type="RBID">pubmed:28066872</idno><idno type="pmid">28066872</idno><idno type="doi">10.1007/s00572-016-0758-4</idno><idno type="wicri:Area/Main/Corpus">000E06</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000E06</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Comparative genomics and expression levels of hydrophobins from eight mycorrhizal genomes.</title><author><name sortKey="Rineau, F" sort="Rineau, F" uniqKey="Rineau F" first="F" last="Rineau">F. Rineau</name><affiliation><nlm:affiliation>Centre for Environmental Sciences, Environmental Biology group, UHasselt, Hasselt, Belgium. francois.rineau@uhasselt.be.</nlm:affiliation></affiliation></author><author><name sortKey="Lmalem, H" sort="Lmalem, H" uniqKey="Lmalem H" first="H" last="Lmalem">H. Lmalem</name><affiliation><nlm:affiliation>Centre for Environmental Sciences, Environmental Biology group, UHasselt, Hasselt, Belgium.</nlm:affiliation></affiliation></author><author><name sortKey="Ahren, D" sort="Ahren, D" uniqKey="Ahren D" first="D" last="Ahren">D. Ahren</name><affiliation><nlm:affiliation>Department of Biology, Microbial Ecology Group, Lund University, Ecology Building, 223 62, Lund, SE, Sweden.</nlm:affiliation></affiliation></author><author><name sortKey="Shah, F" sort="Shah, F" uniqKey="Shah F" first="F" last="Shah">F. Shah</name><affiliation><nlm:affiliation>Department of food and environmental sciences, University of Helsinki, Helsinki, Finland.</nlm:affiliation></affiliation></author><author><name sortKey="Johansson, T" sort="Johansson, T" uniqKey="Johansson T" first="T" last="Johansson">T. Johansson</name><affiliation><nlm:affiliation>Department of Biology, Microbial Ecology Group, Lund University, Ecology Building, 223 62, Lund, SE, Sweden.</nlm:affiliation></affiliation></author><author><name sortKey="Coninx, L" sort="Coninx, L" uniqKey="Coninx L" first="L" last="Coninx">L. Coninx</name><affiliation><nlm:affiliation>Centre for Environmental Sciences, Environmental Biology group, UHasselt, Hasselt, Belgium.</nlm:affiliation></affiliation></author><author><name sortKey="Ruytinx, J" sort="Ruytinx, J" uniqKey="Ruytinx J" first="J" last="Ruytinx">J. Ruytinx</name><affiliation><nlm:affiliation>Centre for Environmental Sciences, Environmental Biology group, UHasselt, Hasselt, Belgium.</nlm:affiliation></affiliation></author><author><name sortKey="Nguyen, H" sort="Nguyen, H" uniqKey="Nguyen H" first="H" last="Nguyen">H. Nguyen</name><affiliation><nlm:affiliation>Centre for Environmental Sciences, Environmental Biology group, UHasselt, Hasselt, Belgium.</nlm:affiliation></affiliation></author><author><name sortKey="Grigoriev, I" sort="Grigoriev, I" uniqKey="Grigoriev I" first="I" last="Grigoriev">I. Grigoriev</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, CA, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Kuo, A" sort="Kuo, A" uniqKey="Kuo A" first="A" last="Kuo">A. Kuo</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, CA, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Kohler, A" sort="Kohler, A" uniqKey="Kohler A" first="A" last="Kohler">A. Kohler</name><affiliation><nlm:affiliation>Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), Institut National de la Recherche Agronomique (INRA), UMR 1136, Champenoux, France.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Laboratory of Excellence ARBRE, University of Lorraine, UMR 1136, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Morin, E" sort="Morin, E" uniqKey="Morin E" first="E" last="Morin">E. Morin</name><affiliation><nlm:affiliation>Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), Institut National de la Recherche Agronomique (INRA), UMR 1136, Champenoux, France.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Laboratory of Excellence ARBRE, University of Lorraine, UMR 1136, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Vangronsveld, J" sort="Vangronsveld, J" uniqKey="Vangronsveld J" first="J" last="Vangronsveld">J. Vangronsveld</name><affiliation><nlm:affiliation>Centre for Environmental Sciences, Environmental Biology group, UHasselt, Hasselt, Belgium.</nlm:affiliation></affiliation></author><author><name sortKey="Martin, F" sort="Martin, F" uniqKey="Martin F" first="F" last="Martin">F. Martin</name><affiliation><nlm:affiliation>Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), Institut National de la Recherche Agronomique (INRA), UMR 1136, Champenoux, France.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Laboratory of Excellence ARBRE, University of Lorraine, UMR 1136, Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Colpaert, J V" sort="Colpaert, J V" uniqKey="Colpaert J" first="J V" last="Colpaert">J V Colpaert</name><affiliation><nlm:affiliation>Centre for Environmental Sciences, Environmental Biology group, UHasselt, Hasselt, Belgium.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Mycorrhiza</title><idno type="eISSN">1432-1890</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Fungal Proteins (genetics)</term><term>Gene Duplication (MeSH)</term><term>Genome, Fungal (MeSH)</term><term>Genomics (MeSH)</term><term>Mycelium (MeSH)</term><term>Mycorrhizae (genetics)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Fungal Proteins</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Duplication</term><term>Genome, Fungal</term><term>Genomics</term><term>Mycelium</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Hydrophobins are small secreted proteins that are present as several gene copies in most fungal genomes. Their properties are now well understood: they are amphiphilic and assemble at hydrophilic/hydrophobic interfaces. However, their physiological functions remain largely unexplored, especially within mycorrhizal fungi. In this study, we identified hydrophobin genes and analysed their distribution in eight mycorrhizal genomes. We then measured their expression levels in three different biological conditions (mycorrhizal tissue vs. free-living mycelium, organic vs. mineral growth medium and aerial vs. submerged growth). Results confirmed that the size of the hydrophobin repertoire increased in the terminal orders of the fungal evolutionary tree. Reconciliation analysis predicted that in 41% of the cases, hydrophobins evolved from duplication events. Whatever the treatment and the fungal species, the pattern of expression of hydrophobins followed a reciprocal function, with one gene much more expressed than others from the same repertoire. These most-expressed hydrophobin genes were also among the most expressed of the whole genome, which suggests that they play a role as structural proteins. The fine-tuning of the expression of hydrophobin genes in each condition appeared complex because it differed considerably between species, in a way that could not be explained by simple ecological traits. Hydrophobin gene regulation in mycorrhizal tissue as compared with free-living mycelium, however, was significantly associated with a calculated high exposure of hydrophilic residues.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">28066872</PMID><DateCompleted><Year>2018</Year><Month>01</Month><Day>10</Day></DateCompleted><DateRevised><Year>2018</Year><Month>12</Month><Day>02</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-1890</ISSN><JournalIssue CitedMedium="Internet"><Volume>27</Volume><Issue>4</Issue><PubDate><Year>2017</Year><Month>May</Month></PubDate></JournalIssue><Title>Mycorrhiza</Title><ISOAbbreviation>Mycorrhiza</ISOAbbreviation></Journal><ArticleTitle>Comparative genomics and expression levels of hydrophobins from eight mycorrhizal genomes.</ArticleTitle><Pagination><MedlinePgn>383-396</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00572-016-0758-4</ELocationID><Abstract><AbstractText>Hydrophobins are small secreted proteins that are present as several gene copies in most fungal genomes. Their properties are now well understood: they are amphiphilic and assemble at hydrophilic/hydrophobic interfaces. However, their physiological functions remain largely unexplored, especially within mycorrhizal fungi. In this study, we identified hydrophobin genes and analysed their distribution in eight mycorrhizal genomes. We then measured their expression levels in three different biological conditions (mycorrhizal tissue vs. free-living mycelium, organic vs. mineral growth medium and aerial vs. submerged growth). Results confirmed that the size of the hydrophobin repertoire increased in the terminal orders of the fungal evolutionary tree. Reconciliation analysis predicted that in 41% of the cases, hydrophobins evolved from duplication events. Whatever the treatment and the fungal species, the pattern of expression of hydrophobins followed a reciprocal function, with one gene much more expressed than others from the same repertoire. These most-expressed hydrophobin genes were also among the most expressed of the whole genome, which suggests that they play a role as structural proteins. The fine-tuning of the expression of hydrophobin genes in each condition appeared complex because it differed considerably between species, in a way that could not be explained by simple ecological traits. Hydrophobin gene regulation in mycorrhizal tissue as compared with free-living mycelium, however, was significantly associated with a calculated high exposure of hydrophilic residues.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Rineau</LastName><ForeName>F</ForeName><Initials>F</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-5135-6184</Identifier><AffiliationInfo><Affiliation>Centre for Environmental Sciences, Environmental Biology group, UHasselt, Hasselt, Belgium. francois.rineau@uhasselt.be.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lmalem</LastName><ForeName>H</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Centre for Environmental Sciences, Environmental Biology group, UHasselt, Hasselt, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ahren</LastName><ForeName>D</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Department of Biology, Microbial Ecology Group, Lund University, Ecology Building, 223 62, Lund, SE, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Shah</LastName><ForeName>F</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Department of food and environmental sciences, University of Helsinki, Helsinki, Finland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Johansson</LastName><ForeName>T</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Department of Biology, Microbial Ecology Group, Lund University, Ecology Building, 223 62, Lund, SE, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Coninx</LastName><ForeName>L</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Centre for Environmental Sciences, Environmental Biology group, UHasselt, Hasselt, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ruytinx</LastName><ForeName>J</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Centre for Environmental Sciences, Environmental Biology group, UHasselt, Hasselt, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nguyen</LastName><ForeName>H</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Centre for Environmental Sciences, Environmental Biology group, UHasselt, Hasselt, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Grigoriev</LastName><ForeName>I</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, CA, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kuo</LastName><ForeName>A</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, CA, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kohler</LastName><ForeName>A</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), Institut National de la Recherche Agronomique (INRA), UMR 1136, Champenoux, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Laboratory of Excellence ARBRE, University of Lorraine, UMR 1136, Champenoux, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Morin</LastName><ForeName>E</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), Institut National de la Recherche Agronomique (INRA), UMR 1136, Champenoux, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Laboratory of Excellence ARBRE, University of Lorraine, UMR 1136, Champenoux, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Vangronsveld</LastName><ForeName>J</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Centre for Environmental Sciences, Environmental Biology group, UHasselt, Hasselt, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Martin</LastName><ForeName>F</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), Institut National de la Recherche Agronomique (INRA), UMR 1136, Champenoux, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Laboratory of Excellence ARBRE, University of Lorraine, UMR 1136, Champenoux, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Colpaert</LastName><ForeName>J V</ForeName><Initials>JV</Initials><AffiliationInfo><Affiliation>Centre for Environmental Sciences, Environmental Biology group, UHasselt, Hasselt, Belgium.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>01</Month><Day>09</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Mycorrhiza</MedlineTA><NlmUniqueID>100955036</NlmUniqueID><ISSNLinking>0940-6360</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005656">Fungal Proteins</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D005656" MajorTopicYN="N">Fungal Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020440" MajorTopicYN="Y">Gene Duplication</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016681" MajorTopicYN="Y">Genome, Fungal</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D023281" MajorTopicYN="N">Genomics</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D025282" MajorTopicYN="N">Mycelium</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D038821" MajorTopicYN="N">Mycorrhizae</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Comparative genomics</Keyword><Keyword MajorTopicYN="N">Hydrophobins</Keyword><Keyword MajorTopicYN="N">Mycorrhizas</Keyword><Keyword MajorTopicYN="N">Small secreted proteins</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2016</Year><Month>10</Month><Day>03</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2016</Year><Month>12</Month><Day>22</Day></PubMedPubDate><PubMedPubDate 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Mar;68(3):1408-13</Citation><ArticleIdList><ArticleId IdType="pubmed">11872494</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Pathol. 2002 Sep 1;3(5):391-400</Citation><ArticleIdList><ArticleId IdType="pubmed">20569345</ArticleId></ArticleIdList></Reference><Reference><Citation>Chem Soc Rev. 2008 Jul;37(7):1395-401</Citation><ArticleIdList><ArticleId IdType="pubmed">18568165</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Biol. 1999 Jan 28;9(2):85-8</Citation><ArticleIdList><ArticleId IdType="pubmed">10021365</ArticleId></ArticleIdList></Reference><Reference><Citation>Fungal Genet Biol. 2012 Mar;49(3):199-209</Citation><ArticleIdList><ArticleId IdType="pubmed">22293303</ArticleId></ArticleIdList></Reference><Reference><Citation>Mycologia. 2007 Mar-Apr;99(2):227-31</Citation><ArticleIdList><ArticleId IdType="pubmed">17682775</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Genet. 2001 May;39(3):190-7</Citation><ArticleIdList><ArticleId IdType="pubmed">11409181</ArticleId></ArticleIdList></Reference><Reference><Citation>Biochim Biophys Acta. 2000 Sep 18;1469(2):79-86</Citation><ArticleIdList><ArticleId IdType="pubmed">10998570</ArticleId></ArticleIdList></Reference><Reference><Citation>Mycorrhiza. 2015 May;25(4):243-52</Citation><ArticleIdList><ArticleId IdType="pubmed">25260351</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2016 Jul 8;44(W1):W236-41</Citation><ArticleIdList><ArticleId IdType="pubmed">27131786</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2002 Aug;68(8):3891-8</Citation><ArticleIdList><ArticleId IdType="pubmed">12147487</ArticleId></ArticleIdList></Reference><Reference><Citation>Sci Rep. 2013;3:1895</Citation><ArticleIdList><ArticleId IdType="pubmed">23719418</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2013 Nov;200(3):875-87</Citation><ArticleIdList><ArticleId IdType="pubmed">23902518</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Struct Biol. 2009 Jul 31;9:51</Citation><ArticleIdList><ArticleId IdType="pubmed">19646261</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2006 Mar 7;103(10):3621-6</Citation><ArticleIdList><ArticleId IdType="pubmed">16537446</ArticleId></ArticleIdList></Reference><Reference><Citation>EMBO J. 1996 Aug 15;15(16):4274-81</Citation><ArticleIdList><ArticleId IdType="pubmed">8861956</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2012 Sep 15;28(18):i409-i415</Citation><ArticleIdList><ArticleId IdType="pubmed">22962460</ArticleId></ArticleIdList></Reference><Reference><Citation>Microbiology. 1998 Nov;144 ( Pt 11):2961-9</Citation><ArticleIdList><ArticleId IdType="pubmed">9846731</ArticleId></ArticleIdList></Reference><Reference><Citation>Biophys J. 1998 Apr;74(4):2059-68</Citation><ArticleIdList><ArticleId IdType="pubmed">9545064</ArticleId></ArticleIdList></Reference><Reference><Citation>Environ Microbiol. 2001 Apr;3(4):229-36</Citation><ArticleIdList><ArticleId IdType="pubmed">11359508</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Methods. 2010 Mar;7(3):237-42</Citation><ArticleIdList><ArticleId IdType="pubmed">20154676</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Genet. 2015 Apr;47(4):410-5</Citation><ArticleIdList><ArticleId IdType="pubmed">25706625</ArticleId></ArticleIdList></Reference><Reference><Citation>Gene. 1996 Feb 2;168(1):93-7</Citation><ArticleIdList><ArticleId IdType="pubmed">8626073</ArticleId></ArticleIdList></Reference><Reference><Citation>Structure. 2001 Feb 7;9(2):83-91</Citation><ArticleIdList><ArticleId IdType="pubmed">11250193</ArticleId></ArticleIdList></Reference><Reference><Citation>J Mol Biol. 1996 Apr 19;257(5):1008-18</Citation><ArticleIdList><ArticleId IdType="pubmed">8632464</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2012 Apr 3;109(14):E804-11</Citation><ArticleIdList><ArticleId IdType="pubmed">22308366</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2016 Mar;209(4):1705-19</Citation><ArticleIdList><ArticleId IdType="pubmed">26527297</ArticleId></ArticleIdList></Reference><Reference><Citation>Microbiology. 1998 Aug;144 ( Pt 8):2345-53</Citation><ArticleIdList><ArticleId IdType="pubmed">9720057</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2013 Sep;79(18):5533-8</Citation><ArticleIdList><ArticleId IdType="pubmed">23835172</ArticleId></ArticleIdList></Reference><Reference><Citation>Fungal Genet Biol. 1998 Feb;23(1):18-33</Citation><ArticleIdList><ArticleId IdType="pubmed">9501475</ArticleId></ArticleIdList></Reference><Reference><Citation>Proteins. 2006 Aug 15;64(3):559-74</Citation><ArticleIdList><ArticleId IdType="pubmed">16736488</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Evol Biol. 2013 Nov 04;13:240</Citation><ArticleIdList><ArticleId IdType="pubmed">24188142</ArticleId></ArticleIdList></Reference><Reference><Citation>Syst Biol. 2008 Oct;57(5):758-71</Citation><ArticleIdList><ArticleId IdType="pubmed">18853362</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2008 Mar 6;452(7183):88-92</Citation><ArticleIdList><ArticleId IdType="pubmed">18322534</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2007 Aug;24(8):1596-9</Citation><ArticleIdList><ArticleId IdType="pubmed">17488738</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 1991 Aug;3(8):793-799</Citation><ArticleIdList><ArticleId IdType="pubmed">12324614</ArticleId></ArticleIdList></Reference><Reference><Citation>Methods Mol Biol. 2014;1137:17-27</Citation><ArticleIdList><ArticleId IdType="pubmed">24573471</ArticleId></ArticleIdList></Reference><Reference><Citation>EMBO J. 1994 Dec 15;13(24):5848-54</Citation><ArticleIdList><ArticleId IdType="pubmed">7813424</ArticleId></ArticleIdList></Reference><Reference><Citation>FEMS Microbiol Rev. 2005 Nov;29(5):877-96</Citation><ArticleIdList><ArticleId IdType="pubmed">16219510</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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