Ectomycorrhizal fungal diversity associated with endemic Tristaniopsis spp. (Myrtaceae) in ultramafic and volcano-sedimentary soils in New Caledonia.
Identifieur interne : 000D94 ( Main/Corpus ); précédent : 000D93; suivant : 000D95Ectomycorrhizal fungal diversity associated with endemic Tristaniopsis spp. (Myrtaceae) in ultramafic and volcano-sedimentary soils in New Caledonia.
Auteurs : Muhammad Waseem ; Marc Ducousso ; Yves Prin ; Odile Domergue ; Laure Hannibal ; Clarisse Majorel ; Philippe Jourand ; Antoine GalianaSource :
- Mycorrhiza [ 1432-1890 ] ; 2017.
English descriptors
- KwdEn :
- MESH :
- chemical : Soil.
- classification : Mycorrhizae.
- microbiology : Myrtaceae.
- New Caledonia, Phylogeny, Soil Microbiology.
Abstract
New Caledonian serpentine (ultramafic) soils contain high levels of toxic heavy metals, in particular nickel, (up to 20 g kg-1) and are deficient in essential elements like carbon, nitrogen and phosphorus while having a high magnesium/calcium ratio. Although previous studies showed that ectomycorrhizal symbioses could play an important role in the adaptation of the endemic plants to ultramafic soils (FEMS Microbiol Ecol 72:238-49, 2010), none of them have compared the diversity of microbial communities from ultramafic vs non-ultramafic soils in New Caledonia. We explored the impact of edaphic characteristics on the diversity of ectomycorrhizal (ECM) fungi associated with different endemic species of Tristaniopsis (Myrtaceae) growing under contrasting soil conditions in the natural ecosystems of New Caledonia. ECM root tips were thus sampled from two different ultramafic sites (Koniambo massif and Desmazures forest) vs two volcano-sedimentary ones (Arama and Mont Ninndo). The molecular characterization of the ECM fungi through partial sequencing of the ITS rRNA gene revealed the presence of different dominant fungal genera including, both soil types combined, Cortinarius (36.1%), Pisolithus (18.5%), Russula (13.4%), Heliotales (8.2%) and Boletellus (7.2%). A high diversity of ECM taxa associated with Tristaniopsis species was found in both ultramafic and volcano-sedimentary soils but no significant differences in ECM genera distribution were observed between both soil types. No link could be established between the phylogenetic clustering of ECM taxa and their soil type origin, thus suggesting a possible functional-rather than taxonomical-adaptation of ECM fungal communities to ultramafic soils.
DOI: 10.1007/s00572-017-0761-4
PubMed: 28091750
Links to Exploration step
pubmed:28091750Le document en format XML
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sort="Galiana, Antoine" uniqKey="Galiana A" first="Antoine" last="Galiana">Antoine Galiana</name><affiliation><nlm:affiliation>CIRAD, UMR113 CIRAD/INRA/IRD/SupAgro/UM, Laboratoire des Symbioses Tropicales et Méditerranéennes, Campus International de Baillarguet, TA A-82/J, F-34398 Cedex 5, Montpellier, France. antoine.galiana@cirad.fr.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2017">2017</date><idno type="RBID">pubmed:28091750</idno><idno type="pmid">28091750</idno><idno type="doi">10.1007/s00572-017-0761-4</idno><idno type="wicri:Area/Main/Corpus">000D94</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000D94</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Ectomycorrhizal fungal diversity associated with endemic Tristaniopsis spp. (Myrtaceae) in ultramafic and volcano-sedimentary soils in New Caledonia.</title><author><name sortKey="Waseem, Muhammad" sort="Waseem, Muhammad" uniqKey="Waseem M" first="Muhammad" last="Waseem">Muhammad Waseem</name><affiliation><nlm:affiliation>CIRAD, UMR113 CIRAD/INRA/IRD/SupAgro/UM, Laboratoire des Symbioses Tropicales et Méditerranéennes, Campus International de Baillarguet, TA A-82/J, F-34398 Cedex 5, Montpellier, France.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Microbiology, Government College University Faisalabad, Faisalabad, Pakistan.</nlm:affiliation></affiliation></author><author><name sortKey="Ducousso, Marc" sort="Ducousso, Marc" uniqKey="Ducousso M" first="Marc" last="Ducousso">Marc Ducousso</name><affiliation><nlm:affiliation>CIRAD, UMR113 CIRAD/INRA/IRD/SupAgro/UM, Laboratoire des Symbioses Tropicales et Méditerranéennes, Campus International de Baillarguet, TA A-82/J, F-34398 Cedex 5, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Prin, Yves" sort="Prin, Yves" uniqKey="Prin Y" first="Yves" last="Prin">Yves Prin</name><affiliation><nlm:affiliation>CIRAD, UMR113 CIRAD/INRA/IRD/SupAgro/UM, Laboratoire des Symbioses Tropicales et Méditerranéennes, Campus International de Baillarguet, TA A-82/J, F-34398 Cedex 5, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Domergue, Odile" sort="Domergue, Odile" uniqKey="Domergue O" first="Odile" last="Domergue">Odile Domergue</name><affiliation><nlm:affiliation>INRA, UMR113 CIRAD/INRA/IRD/SupAgro/UM, Laboratoire des Symbioses Tropicales et Méditerranéennes, Campus International de Baillarguet, TA A-82/J, F-34398 Cedex 5, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Hannibal, Laure" sort="Hannibal, Laure" uniqKey="Hannibal L" first="Laure" last="Hannibal">Laure Hannibal</name><affiliation><nlm:affiliation>IRD, UMR113 CIRAD/INRA/IRD/SupAgro/UM, Laboratoire des Symbioses Tropicales et Méditerranéennes, F-98848, Noumea Cedex, New Caledonia.</nlm:affiliation></affiliation></author><author><name sortKey="Majorel, Clarisse" sort="Majorel, Clarisse" uniqKey="Majorel C" first="Clarisse" last="Majorel">Clarisse Majorel</name><affiliation><nlm:affiliation>IRD, UMR113 CIRAD/INRA/IRD/SupAgro/UM, Laboratoire des Symbioses Tropicales et Méditerranéennes, F-98848, Noumea Cedex, New Caledonia.</nlm:affiliation></affiliation></author><author><name sortKey="Jourand, Philippe" sort="Jourand, Philippe" uniqKey="Jourand P" first="Philippe" last="Jourand">Philippe Jourand</name><affiliation><nlm:affiliation>IRD, UMR113 CIRAD/INRA/IRD/SupAgro/UM, Laboratoire des Symbioses Tropicales et Méditerranéennes, F-98848, Noumea Cedex, New Caledonia.</nlm:affiliation></affiliation></author><author><name sortKey="Galiana, Antoine" sort="Galiana, Antoine" uniqKey="Galiana A" first="Antoine" last="Galiana">Antoine Galiana</name><affiliation><nlm:affiliation>CIRAD, UMR113 CIRAD/INRA/IRD/SupAgro/UM, Laboratoire des Symbioses Tropicales et Méditerranéennes, Campus International de Baillarguet, TA A-82/J, F-34398 Cedex 5, Montpellier, France. antoine.galiana@cirad.fr.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Mycorrhiza</title><idno type="eISSN">1432-1890</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Mycorrhizae (classification)</term><term>Myrtaceae (microbiology)</term><term>New Caledonia (MeSH)</term><term>Phylogeny (MeSH)</term><term>Soil (MeSH)</term><term>Soil Microbiology (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Soil</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Myrtaceae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>New Caledonia</term><term>Phylogeny</term><term>Soil Microbiology</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">New Caledonian serpentine (ultramafic) soils contain high levels of toxic heavy metals, in particular nickel, (up to 20 g kg<sup>-1</sup>) and are deficient in essential elements like carbon, nitrogen and phosphorus while having a high magnesium/calcium ratio. Although previous studies showed that ectomycorrhizal symbioses could play an important role in the adaptation of the endemic plants to ultramafic soils (FEMS Microbiol Ecol 72:238-49, 2010), none of them have compared the diversity of microbial communities from ultramafic vs non-ultramafic soils in New Caledonia. We explored the impact of edaphic characteristics on the diversity of ectomycorrhizal (ECM) fungi associated with different endemic species of Tristaniopsis (Myrtaceae) growing under contrasting soil conditions in the natural ecosystems of New Caledonia. ECM root tips were thus sampled from two different ultramafic sites (Koniambo massif and Desmazures forest) vs two volcano-sedimentary ones (Arama and Mont Ninndo). The molecular characterization of the ECM fungi through partial sequencing of the ITS rRNA gene revealed the presence of different dominant fungal genera including, both soil types combined, Cortinarius (36.1%), Pisolithus (18.5%), Russula (13.4%), Heliotales (8.2%) and Boletellus (7.2%). A high diversity of ECM taxa associated with Tristaniopsis species was found in both ultramafic and volcano-sedimentary soils but no significant differences in ECM genera distribution were observed between both soil types. No link could be established between the phylogenetic clustering of ECM taxa and their soil type origin, thus suggesting a possible functional-rather than taxonomical-adaptation of ECM fungal communities to ultramafic soils.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">28091750</PMID><DateCompleted><Year>2018</Year><Month>01</Month><Day>10</Day></DateCompleted><DateRevised><Year>2018</Year><Month>12</Month><Day>02</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-1890</ISSN><JournalIssue CitedMedium="Internet"><Volume>27</Volume><Issue>4</Issue><PubDate><Year>2017</Year><Month>May</Month></PubDate></JournalIssue><Title>Mycorrhiza</Title><ISOAbbreviation>Mycorrhiza</ISOAbbreviation></Journal><ArticleTitle>Ectomycorrhizal fungal diversity associated with endemic Tristaniopsis spp. (Myrtaceae) in ultramafic and volcano-sedimentary soils in New Caledonia.</ArticleTitle><Pagination><MedlinePgn>407-413</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00572-017-0761-4</ELocationID><Abstract><AbstractText>New Caledonian serpentine (ultramafic) soils contain high levels of toxic heavy metals, in particular nickel, (up to 20 g kg<sup>-1</sup>) and are deficient in essential elements like carbon, nitrogen and phosphorus while having a high magnesium/calcium ratio. Although previous studies showed that ectomycorrhizal symbioses could play an important role in the adaptation of the endemic plants to ultramafic soils (FEMS Microbiol Ecol 72:238-49, 2010), none of them have compared the diversity of microbial communities from ultramafic vs non-ultramafic soils in New Caledonia. We explored the impact of edaphic characteristics on the diversity of ectomycorrhizal (ECM) fungi associated with different endemic species of Tristaniopsis (Myrtaceae) growing under contrasting soil conditions in the natural ecosystems of New Caledonia. ECM root tips were thus sampled from two different ultramafic sites (Koniambo massif and Desmazures forest) vs two volcano-sedimentary ones (Arama and Mont Ninndo). The molecular characterization of the ECM fungi through partial sequencing of the ITS rRNA gene revealed the presence of different dominant fungal genera including, both soil types combined, Cortinarius (36.1%), Pisolithus (18.5%), Russula (13.4%), Heliotales (8.2%) and Boletellus (7.2%). A high diversity of ECM taxa associated with Tristaniopsis species was found in both ultramafic and volcano-sedimentary soils but no significant differences in ECM genera distribution were observed between both soil types. No link could be established between the phylogenetic clustering of ECM taxa and their soil type origin, thus suggesting a possible functional-rather than taxonomical-adaptation of ECM fungal communities to ultramafic soils.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Waseem</LastName><ForeName>Muhammad</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>CIRAD, UMR113 CIRAD/INRA/IRD/SupAgro/UM, Laboratoire des Symbioses Tropicales et Méditerranéennes, Campus International de Baillarguet, TA A-82/J, F-34398 Cedex 5, Montpellier, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Microbiology, Government College University Faisalabad, Faisalabad, Pakistan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ducousso</LastName><ForeName>Marc</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>CIRAD, UMR113 CIRAD/INRA/IRD/SupAgro/UM, Laboratoire des Symbioses Tropicales et Méditerranéennes, Campus International de Baillarguet, TA A-82/J, F-34398 Cedex 5, Montpellier, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Prin</LastName><ForeName>Yves</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>CIRAD, UMR113 CIRAD/INRA/IRD/SupAgro/UM, Laboratoire des Symbioses Tropicales et Méditerranéennes, Campus International de Baillarguet, TA A-82/J, F-34398 Cedex 5, Montpellier, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Domergue</LastName><ForeName>Odile</ForeName><Initials>O</Initials><AffiliationInfo><Affiliation>INRA, UMR113 CIRAD/INRA/IRD/SupAgro/UM, Laboratoire des Symbioses Tropicales et Méditerranéennes, Campus International de Baillarguet, TA A-82/J, F-34398 Cedex 5, Montpellier, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hannibal</LastName><ForeName>Laure</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>IRD, UMR113 CIRAD/INRA/IRD/SupAgro/UM, Laboratoire des Symbioses Tropicales et Méditerranéennes, F-98848, Noumea Cedex, New Caledonia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Majorel</LastName><ForeName>Clarisse</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>IRD, UMR113 CIRAD/INRA/IRD/SupAgro/UM, Laboratoire des Symbioses Tropicales et Méditerranéennes, F-98848, Noumea Cedex, New Caledonia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jourand</LastName><ForeName>Philippe</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>IRD, UMR113 CIRAD/INRA/IRD/SupAgro/UM, Laboratoire des Symbioses Tropicales et Méditerranéennes, F-98848, Noumea Cedex, New Caledonia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Galiana</LastName><ForeName>Antoine</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>CIRAD, UMR113 CIRAD/INRA/IRD/SupAgro/UM, Laboratoire des Symbioses Tropicales et Méditerranéennes, Campus International de Baillarguet, TA A-82/J, F-34398 Cedex 5, Montpellier, France. antoine.galiana@cirad.fr.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>01</Month><Day>13</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Mycorrhiza</MedlineTA><NlmUniqueID>100955036</NlmUniqueID><ISSNLinking>0940-6360</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012987">Soil</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D038821" MajorTopicYN="N">Mycorrhizae</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D027822" MajorTopicYN="N">Myrtaceae</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D009510" MajorTopicYN="N">New Caledonia</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012987" MajorTopicYN="N">Soil</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012988" MajorTopicYN="Y">Soil Microbiology</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Cortinarius</Keyword><Keyword MajorTopicYN="N">Fungal diversity</Keyword><Keyword MajorTopicYN="N">Nickel tolerance</Keyword><Keyword MajorTopicYN="N">Pisolithus</Keyword><Keyword MajorTopicYN="N">Russula</Keyword><Keyword MajorTopicYN="N">Serpentine soils</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate 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