Does warming by open-top chambers induce change in the root-associated fungal community of the arctic dwarf shrub Cassiope tetragona (Ericaceae)?
Identifieur interne : 000D28 ( Main/Corpus ); précédent : 000D27; suivant : 000D29Does warming by open-top chambers induce change in the root-associated fungal community of the arctic dwarf shrub Cassiope tetragona (Ericaceae)?
Auteurs : Kelsey Erin Lorberau ; Synn Ve Smebye Botnen ; Sunil Mundra ; Anders Bj Rnsgaard Aas ; Jelte Rozema ; Pernille Bronken Eidesen ; H Vard KauserudSource :
- Mycorrhiza [ 1432-1890 ] ; 2017.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : DNA, Fungal.
- classification : Mycorrhizae.
- microbiology : Ericaceae, Plant Roots.
- Arctic Regions, Climate Change, DNA Barcoding, Taxonomic, Temperature.
Abstract
Climate change may alter mycorrhizal communities, which impact ecosystem characteristics such as carbon sequestration processes. These impacts occur at a greater magnitude in Arctic ecosystems, where the climate is warming faster than in lower latitudes. Cassiope tetragona (L.) D. Don is an Arctic plant species in the Ericaceae family with a circumpolar range. C. tetragona has been reported to form ericoid mycorrhizal (ErM) as well as ectomycorrhizal (ECM) symbioses. In this study, the fungal taxa present within roots of C. tetragona plants collected from Svalbard were investigated using DNA metabarcoding. In light of ongoing climate change in the Arctic, the effects of artificial warming by open-top chambers (OTCs) on the fungal root community of C. tetragona were evaluated. We detected only a weak effect of warming by OTCs on the root-associated fungal communities that was masked by the spatial variation between sampling sites. The root fungal community of C. tetragona was dominated by fungal groups in the Basidiomycota traditionally classified as either saprotrophic or ECM symbionts, including the orders Sebacinales and Agaricales and the genera Clavaria, Cortinarius, and Mycena. Only a minor proportion of the operational taxonomic units (OTUs) could be annotated as ErM-forming fungi. This indicates that C. tetragona may be forming mycorrhizal symbioses with typically ECM-forming fungi, although no characteristic ECM root tips were observed. Previous studies have indicated that some saprophytic fungi may also be involved in biotrophic associations, but whether the saprotrophic fungi in the roots of C. tetragona are involved in biotrophic associations remains unclear. The need for more experimental and microscopy-based studies to reveal the nature of the fungal associations in C. tetragona roots is emphasized.
DOI: 10.1007/s00572-017-0767-y
PubMed: 28349216
Links to Exploration step
pubmed:28349216Le document en format XML
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Box 1072, Blindern, 0316, Oslo, Norway.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2017">2017</date><idno type="RBID">pubmed:28349216</idno><idno type="pmid">28349216</idno><idno type="doi">10.1007/s00572-017-0767-y</idno><idno type="wicri:Area/Main/Corpus">000D28</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000D28</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Does warming by open-top chambers induce change in the root-associated fungal community of the arctic dwarf shrub Cassiope tetragona (Ericaceae)?</title><author><name sortKey="Lorberau, Kelsey Erin" sort="Lorberau, Kelsey Erin" uniqKey="Lorberau K" first="Kelsey Erin" last="Lorberau">Kelsey Erin Lorberau</name><affiliation><nlm:affiliation>University of Oslo, P.O. Box 1072, Blindern, 0316, Oslo, Norway. k.e.lorberau@gmail.com.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>University Centre in Svalbard, P.O. Box 156, 9171, Longyearbyen, Norway. k.e.lorberau@gmail.com.</nlm:affiliation></affiliation></author><author><name sortKey="Botnen, Synn Ve Smebye" sort="Botnen, Synn Ve Smebye" uniqKey="Botnen S" first="Synn Ve Smebye" last="Botnen">Synn Ve Smebye Botnen</name><affiliation><nlm:affiliation>University of Oslo, P.O. Box 1072, Blindern, 0316, Oslo, Norway.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>University Centre in Svalbard, P.O. Box 156, 9171, Longyearbyen, Norway.</nlm:affiliation></affiliation></author><author><name sortKey="Mundra, Sunil" sort="Mundra, Sunil" uniqKey="Mundra S" first="Sunil" last="Mundra">Sunil Mundra</name><affiliation><nlm:affiliation>University of Oslo, P.O. Box 1072, Blindern, 0316, Oslo, Norway.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>University Centre in Svalbard, P.O. Box 156, 9171, Longyearbyen, Norway.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Biodiversity and Climate Research Centre, Senckenberg Gesellschaft für Naturforschung, Seckenberganlage, 25, 60325, Frankfurt am Main, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Aas, Anders Bj Rnsgaard" sort="Aas, Anders Bj Rnsgaard" uniqKey="Aas A" first="Anders Bj Rnsgaard" last="Aas">Anders Bj Rnsgaard Aas</name><affiliation><nlm:affiliation>University of Oslo, P.O. Box 1072, Blindern, 0316, Oslo, Norway.</nlm:affiliation></affiliation></author><author><name sortKey="Rozema, Jelte" sort="Rozema, Jelte" uniqKey="Rozema J" first="Jelte" last="Rozema">Jelte Rozema</name><affiliation><nlm:affiliation>VU University (Vrije Universiteit) Amsterdam, De Boelelaan 1085, 1081 HV, Amsterdam, The Netherlands.</nlm:affiliation></affiliation></author><author><name sortKey="Eidesen, Pernille Bronken" sort="Eidesen, Pernille Bronken" uniqKey="Eidesen P" first="Pernille Bronken" last="Eidesen">Pernille Bronken Eidesen</name><affiliation><nlm:affiliation>University Centre in Svalbard, P.O. Box 156, 9171, Longyearbyen, Norway.</nlm:affiliation></affiliation></author><author><name sortKey="Kauserud, H Vard" sort="Kauserud, H Vard" uniqKey="Kauserud H" first="H Vard" last="Kauserud">H Vard Kauserud</name><affiliation><nlm:affiliation>University of Oslo, P.O. Box 1072, Blindern, 0316, Oslo, Norway.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Mycorrhiza</title><idno type="eISSN">1432-1890</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Arctic Regions (MeSH)</term><term>Climate Change (MeSH)</term><term>DNA Barcoding, Taxonomic (MeSH)</term><term>DNA, Fungal (genetics)</term><term>Ericaceae (microbiology)</term><term>Mycorrhizae (classification)</term><term>Plant Roots (microbiology)</term><term>Temperature (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Fungal</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Ericaceae</term><term>Plant Roots</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Arctic Regions</term><term>Climate Change</term><term>DNA Barcoding, Taxonomic</term><term>Temperature</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Climate change may alter mycorrhizal communities, which impact ecosystem characteristics such as carbon sequestration processes. These impacts occur at a greater magnitude in Arctic ecosystems, where the climate is warming faster than in lower latitudes. Cassiope tetragona (L.) D. Don is an Arctic plant species in the Ericaceae family with a circumpolar range. C. tetragona has been reported to form ericoid mycorrhizal (ErM) as well as ectomycorrhizal (ECM) symbioses. In this study, the fungal taxa present within roots of C. tetragona plants collected from Svalbard were investigated using DNA metabarcoding. In light of ongoing climate change in the Arctic, the effects of artificial warming by open-top chambers (OTCs) on the fungal root community of C. tetragona were evaluated. We detected only a weak effect of warming by OTCs on the root-associated fungal communities that was masked by the spatial variation between sampling sites. The root fungal community of C. tetragona was dominated by fungal groups in the Basidiomycota traditionally classified as either saprotrophic or ECM symbionts, including the orders Sebacinales and Agaricales and the genera Clavaria, Cortinarius, and Mycena. Only a minor proportion of the operational taxonomic units (OTUs) could be annotated as ErM-forming fungi. This indicates that C. tetragona may be forming mycorrhizal symbioses with typically ECM-forming fungi, although no characteristic ECM root tips were observed. Previous studies have indicated that some saprophytic fungi may also be involved in biotrophic associations, but whether the saprotrophic fungi in the roots of C. tetragona are involved in biotrophic associations remains unclear. The need for more experimental and microscopy-based studies to reveal the nature of the fungal associations in C. tetragona roots is emphasized.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">28349216</PMID><DateCompleted><Year>2018</Year><Month>01</Month><Day>10</Day></DateCompleted><DateRevised><Year>2018</Year><Month>12</Month><Day>02</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-1890</ISSN><JournalIssue CitedMedium="Internet"><Volume>27</Volume><Issue>5</Issue><PubDate><Year>2017</Year><Month>Jul</Month></PubDate></JournalIssue><Title>Mycorrhiza</Title><ISOAbbreviation>Mycorrhiza</ISOAbbreviation></Journal><ArticleTitle>Does warming by open-top chambers induce change in the root-associated fungal community of the arctic dwarf shrub Cassiope tetragona (Ericaceae)?</ArticleTitle><Pagination><MedlinePgn>513-524</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00572-017-0767-y</ELocationID><Abstract><AbstractText>Climate change may alter mycorrhizal communities, which impact ecosystem characteristics such as carbon sequestration processes. These impacts occur at a greater magnitude in Arctic ecosystems, where the climate is warming faster than in lower latitudes. Cassiope tetragona (L.) D. Don is an Arctic plant species in the Ericaceae family with a circumpolar range. C. tetragona has been reported to form ericoid mycorrhizal (ErM) as well as ectomycorrhizal (ECM) symbioses. In this study, the fungal taxa present within roots of C. tetragona plants collected from Svalbard were investigated using DNA metabarcoding. In light of ongoing climate change in the Arctic, the effects of artificial warming by open-top chambers (OTCs) on the fungal root community of C. tetragona were evaluated. We detected only a weak effect of warming by OTCs on the root-associated fungal communities that was masked by the spatial variation between sampling sites. The root fungal community of C. tetragona was dominated by fungal groups in the Basidiomycota traditionally classified as either saprotrophic or ECM symbionts, including the orders Sebacinales and Agaricales and the genera Clavaria, Cortinarius, and Mycena. Only a minor proportion of the operational taxonomic units (OTUs) could be annotated as ErM-forming fungi. This indicates that C. tetragona may be forming mycorrhizal symbioses with typically ECM-forming fungi, although no characteristic ECM root tips were observed. Previous studies have indicated that some saprophytic fungi may also be involved in biotrophic associations, but whether the saprotrophic fungi in the roots of C. tetragona are involved in biotrophic associations remains unclear. The need for more experimental and microscopy-based studies to reveal the nature of the fungal associations in C. tetragona roots is emphasized.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Lorberau</LastName><ForeName>Kelsey Erin</ForeName><Initials>KE</Initials><AffiliationInfo><Affiliation>University of Oslo, P.O. Box 1072, Blindern, 0316, Oslo, Norway. k.e.lorberau@gmail.com.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>University Centre in Svalbard, P.O. Box 156, 9171, Longyearbyen, Norway. k.e.lorberau@gmail.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Botnen</LastName><ForeName>Synnøve Smebye</ForeName><Initials>SS</Initials><AffiliationInfo><Affiliation>University of Oslo, P.O. Box 1072, Blindern, 0316, Oslo, Norway.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>University Centre in Svalbard, P.O. Box 156, 9171, Longyearbyen, Norway.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mundra</LastName><ForeName>Sunil</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>University of Oslo, P.O. Box 1072, Blindern, 0316, Oslo, Norway.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>University Centre in Svalbard, P.O. Box 156, 9171, Longyearbyen, Norway.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Biodiversity and Climate Research Centre, Senckenberg Gesellschaft für Naturforschung, Seckenberganlage, 25, 60325, Frankfurt am Main, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Aas</LastName><ForeName>Anders Bjørnsgaard</ForeName><Initials>AB</Initials><AffiliationInfo><Affiliation>University of Oslo, P.O. Box 1072, Blindern, 0316, Oslo, Norway.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rozema</LastName><ForeName>Jelte</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>VU University (Vrije Universiteit) Amsterdam, De Boelelaan 1085, 1081 HV, Amsterdam, The Netherlands.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Eidesen</LastName><ForeName>Pernille Bronken</ForeName><Initials>PB</Initials><AffiliationInfo><Affiliation>University Centre in Svalbard, P.O. Box 156, 9171, Longyearbyen, Norway.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kauserud</LastName><ForeName>Håvard</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>University of Oslo, P.O. Box 1072, Blindern, 0316, Oslo, Norway.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>03</Month><Day>27</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Mycorrhiza</MedlineTA><NlmUniqueID>100955036</NlmUniqueID><ISSNLinking>0940-6360</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004271">DNA, Fungal</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001110" MajorTopicYN="N">Arctic Regions</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D057231" MajorTopicYN="N">Climate Change</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D058893" MajorTopicYN="N">DNA Barcoding, Taxonomic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004271" MajorTopicYN="N">DNA, Fungal</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D029791" MajorTopicYN="N">Ericaceae</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D038821" MajorTopicYN="N">Mycorrhizae</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013696" MajorTopicYN="Y">Temperature</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Arctic</Keyword><Keyword MajorTopicYN="N">Cassiope tetragona</Keyword><Keyword MajorTopicYN="N">Climate change</Keyword><Keyword MajorTopicYN="N">Ectomycorrhiza</Keyword><Keyword MajorTopicYN="N">Ericoid mycorrhiza</Keyword><Keyword MajorTopicYN="N">High-throughput sequencing</Keyword><Keyword MajorTopicYN="N">OTCs</Keyword><Keyword MajorTopicYN="N">Open-top chambers</Keyword><Keyword MajorTopicYN="N">Root-associated fungi</Keyword><Keyword MajorTopicYN="N">Svalbard</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2016</Year><Month>12</Month><Day>05</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2017</Year><Month>02</Month><Day>28</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2017</Year><Month>3</Month><Day>30</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2018</Year><Month>1</Month><Day>11</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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|texte= Does warming by open-top chambers induce change in the root-associated fungal community of the arctic dwarf shrub Cassiope tetragona (Ericaceae)?
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