Computational investigation of small RNAs in the establishment of root nodules and arbuscular mycorrhiza in leguminous plants.
Identifieur interne : 000A29 ( Main/Corpus ); précédent : 000A28; suivant : 000A30Computational investigation of small RNAs in the establishment of root nodules and arbuscular mycorrhiza in leguminous plants.
Auteurs : Danfeng Jin ; Xianwen Meng ; Yue Wang ; Jingjing Wang ; Yuhua Zhao ; Ming ChenSource :
- Science China. Life sciences [ 1869-1889 ] ; 2018.
English descriptors
- KwdEn :
- Computational Biology (MeSH), Databases, Genetic (MeSH), Fabaceae (microbiology), Gene Expression Regulation, Plant (MeSH), MicroRNAs (genetics), MicroRNAs (metabolism), Mycorrhizae (genetics), Mycorrhizae (physiology), Plant Proteins (genetics), Plant Proteins (metabolism), Root Nodules, Plant (genetics), Root Nodules, Plant (metabolism), Root Nodules, Plant (microbiology), Symbiosis (MeSH).
- MESH :
- chemical , genetics : MicroRNAs, Plant Proteins.
- chemical , metabolism : MicroRNAs, Plant Proteins.
- genetics : Mycorrhizae, Root Nodules, Plant.
- metabolism : Root Nodules, Plant.
- microbiology : Fabaceae, Root Nodules, Plant.
- physiology : Mycorrhizae.
- Computational Biology, Databases, Genetic, Gene Expression Regulation, Plant, Symbiosis.
Abstract
Many small RNAs have been confirmed to play important roles in the development of root nodules and arbuscular mycorrhiza. In this study, we carried out the identification of certain small RNAs in leguminous plants (Medicago truncatula, soybean, peanut and common bean), such as miRNAs, tRFs and srRNAs, as well as the computational investigation of their regulations. Thirty miRNAs were predicted to be involved in establishing root nodules and mycorrhiza, and 12 of them were novel in common bean and peanut. The generation of tRFs in M. truncatula was not associated with tRNA gene frequencies and codon usage. Six tRFs exhibited different expressions in mycorrhiza and root nodules. Moreover, srRNA5.8S in M. truncatula was generated from the regions with relatively low conservation at the rRNA 3' terminal. The protein-protein interactions between the proteins encoded by the target genes of miRNAs, tRFs and srRNAs were computed. The regulation of these three types of sRNAs in the symbiosis between leguminous plants and microorganisms is not a single regulation of certain signaling or metabolic pathways but a global regulation for the plants to own growth or specific events in symbiosis.
DOI: 10.1007/s11427-017-9203-7
PubMed: 29305786
Links to Exploration step
pubmed:29305786Le document en format XML
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<term>MicroRNAs (genetics)</term>
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<term>Mycorrhizae (genetics)</term>
<term>Mycorrhizae (physiology)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Root Nodules, Plant (genetics)</term>
<term>Root Nodules, Plant (metabolism)</term>
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<front><div type="abstract" xml:lang="en">Many small RNAs have been confirmed to play important roles in the development of root nodules and arbuscular mycorrhiza. In this study, we carried out the identification of certain small RNAs in leguminous plants (Medicago truncatula, soybean, peanut and common bean), such as miRNAs, tRFs and srRNAs, as well as the computational investigation of their regulations. Thirty miRNAs were predicted to be involved in establishing root nodules and mycorrhiza, and 12 of them were novel in common bean and peanut. The generation of tRFs in M. truncatula was not associated with tRNA gene frequencies and codon usage. Six tRFs exhibited different expressions in mycorrhiza and root nodules. Moreover, srRNA<sup>5.8S</sup>
in M. truncatula was generated from the regions with relatively low conservation at the rRNA 3' terminal. The protein-protein interactions between the proteins encoded by the target genes of miRNAs, tRFs and srRNAs were computed. The regulation of these three types of sRNAs in the symbiosis between leguminous plants and microorganisms is not a single regulation of certain signaling or metabolic pathways but a global regulation for the plants to own growth or specific events in symbiosis.</div>
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