High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis.
Identifieur interne : 000A08 ( Main/Corpus ); précédent : 000A07; suivant : 000A09High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis.
Auteurs : Eric C H. Chen ; Emmanuelle Morin ; Denis Beaudet ; Jessica Noel ; Gokalp Yildirir ; Steve Ndikumana ; Philippe Charron ; Camille St-Onge ; John Giorgi ; Manuela Krüger ; Timea Marton ; Jeanne Ropars ; Igor V. Grigoriev ; Matthieu Hainaut ; Bernard Henrissat ; Christophe Roux ; Francis Martin ; Nicolas CorradiSource :
- The New phytologist [ 1469-8137 ] ; 2018.
English descriptors
- KwdEn :
- Adaptation, Physiological (genetics), DNA Transposable Elements (genetics), Fungal Proteins (chemistry), Genes, Fungal (MeSH), Genetic Variation (MeSH), Genome, Fungal (MeSH), Glomeromycota (genetics), Glomeromycota (isolation & purification), Models, Biological (MeSH), Molecular Sequence Annotation (MeSH), Mycorrhizae (genetics), Phylogeny (MeSH), Protein Domains (MeSH), Species Specificity (MeSH), Symbiosis (genetics).
- MESH :
- chemical , chemistry : Fungal Proteins.
- chemical , genetics : DNA Transposable Elements.
- genetics : Adaptation, Physiological, Glomeromycota, Mycorrhizae, Symbiosis.
- isolation & purification : Glomeromycota.
- Genes, Fungal, Genetic Variation, Genome, Fungal, Models, Biological, Molecular Sequence Annotation, Phylogeny, Protein Domains, Species Specificity.
Abstract
Arbuscular mycorrhizal fungi (AMF) are known to improve plant fitness through the establishment of mycorrhizal symbioses. Genetic and phenotypic variations among closely related AMF isolates can significantly affect plant growth, but the genomic changes underlying this variability are unclear. To address this issue, we improved the genome assembly and gene annotation of the model strain Rhizophagus irregularis DAOM197198, and compared its gene content with five isolates of R. irregularis sampled in the same field. All isolates harbor striking genome variations, with large numbers of isolate-specific genes, gene family expansions, and evidence of interisolate genetic exchange. The observed variability affects all gene ontology terms and PFAM protein domains, as well as putative mycorrhiza-induced small secreted effector-like proteins and other symbiosis differentially expressed genes. High variability is also found in active transposable elements. Overall, these findings indicate a substantial divergence in the functioning capacity of isolates harvested from the same field, and thus their genetic potential for adaptation to biotic and abiotic changes. Our data also provide a first glimpse into the genome diversity that resides within natural populations of these symbionts, and open avenues for future analyses of plant-AMF interactions that link AMF genome variation with plant phenotype and fitness.
DOI: 10.1111/nph.14989
PubMed: 29355972
Links to Exploration step
pubmed:29355972Le document en format XML
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Chen</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Morin, Emmanuelle" sort="Morin, Emmanuelle" uniqKey="Morin E" first="Emmanuelle" last="Morin">Emmanuelle Morin</name><affiliation><nlm:affiliation>Institut National de la Recherche Agronomique (INRA), Unité Mixte de Recherche 1136 Interactions Arbres/Microorganismes, Laboratoire D'excellence Recherches Avancées sur la Biologie de l'Arbre et les Ecosystèmes Forestiers (ARBRE), Centre INRA-Grand Est-Nancy, Champenoux, 54280, France.</nlm:affiliation></affiliation></author><author><name sortKey="Beaudet, Denis" sort="Beaudet, Denis" uniqKey="Beaudet D" first="Denis" last="Beaudet">Denis Beaudet</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Noel, Jessica" sort="Noel, Jessica" uniqKey="Noel J" first="Jessica" last="Noel">Jessica Noel</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Yildirir, Gokalp" sort="Yildirir, Gokalp" uniqKey="Yildirir G" first="Gokalp" last="Yildirir">Gokalp Yildirir</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Ndikumana, Steve" sort="Ndikumana, Steve" uniqKey="Ndikumana S" first="Steve" last="Ndikumana">Steve Ndikumana</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Charron, Philippe" sort="Charron, Philippe" uniqKey="Charron P" first="Philippe" last="Charron">Philippe Charron</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="St Onge, Camille" sort="St Onge, Camille" uniqKey="St Onge C" first="Camille" last="St-Onge">Camille St-Onge</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Giorgi, John" sort="Giorgi, John" uniqKey="Giorgi J" first="John" last="Giorgi">John Giorgi</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Kruger, Manuela" sort="Kruger, Manuela" uniqKey="Kruger M" first="Manuela" last="Krüger">Manuela Krüger</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Marton, Timea" sort="Marton, Timea" uniqKey="Marton T" first="Timea" last="Marton">Timea Marton</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Ropars, Jeanne" sort="Ropars, Jeanne" uniqKey="Ropars J" first="Jeanne" last="Ropars">Jeanne Ropars</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Grigoriev, Igor V" sort="Grigoriev, Igor V" uniqKey="Grigoriev I" first="Igor V" last="Grigoriev">Igor V. Grigoriev</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, CA, 94598, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Hainaut, Matthieu" sort="Hainaut, Matthieu" uniqKey="Hainaut M" first="Matthieu" last="Hainaut">Matthieu Hainaut</name><affiliation><nlm:affiliation>Architecture et Fonction des Macromolécules Biologiques, CNRS, Aix-Marseille Université, Marseille, 13288, France.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>INRA, USC 1408 AFMB, Marseille, F-13288, France.</nlm:affiliation></affiliation></author><author><name sortKey="Henrissat, Bernard" sort="Henrissat, Bernard" uniqKey="Henrissat B" first="Bernard" last="Henrissat">Bernard Henrissat</name><affiliation><nlm:affiliation>Architecture et Fonction des Macromolécules Biologiques, CNRS, Aix-Marseille Université, Marseille, 13288, France.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>INRA, USC 1408 AFMB, Marseille, F-13288, France.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Biological Sciences, King Abdulaziz University, Jeddah, 21589, Saudi Arabia.</nlm:affiliation></affiliation></author><author><name sortKey="Roux, Christophe" sort="Roux, Christophe" uniqKey="Roux C" first="Christophe" last="Roux">Christophe Roux</name><affiliation><nlm:affiliation>Laboratoire de Recherche en Sciences Végétales, UPS, CNRS 24 Chemin de Borde Rouge-Auzeville, Université de Toulouse, Castanet-Tolosan, 31326, France.</nlm:affiliation></affiliation></author><author><name sortKey="Martin, Francis" sort="Martin, Francis" uniqKey="Martin F" first="Francis" last="Martin">Francis Martin</name><affiliation><nlm:affiliation>Institut National de la Recherche Agronomique (INRA), Unité Mixte de Recherche 1136 Interactions Arbres/Microorganismes, Laboratoire D'excellence Recherches Avancées sur la Biologie de l'Arbre et les Ecosystèmes Forestiers (ARBRE), Centre INRA-Grand Est-Nancy, Champenoux, 54280, France.</nlm:affiliation></affiliation></author><author><name sortKey="Corradi, Nicolas" sort="Corradi, Nicolas" uniqKey="Corradi N" first="Nicolas" last="Corradi">Nicolas Corradi</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2018">2018</date><idno type="RBID">pubmed:29355972</idno><idno type="pmid">29355972</idno><idno type="doi">10.1111/nph.14989</idno><idno type="wicri:Area/Main/Corpus">000A08</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000A08</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis.</title><author><name sortKey="Chen, Eric C H" sort="Chen, Eric C H" uniqKey="Chen E" first="Eric C H" last="Chen">Eric C H. Chen</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Morin, Emmanuelle" sort="Morin, Emmanuelle" uniqKey="Morin E" first="Emmanuelle" last="Morin">Emmanuelle Morin</name><affiliation><nlm:affiliation>Institut National de la Recherche Agronomique (INRA), Unité Mixte de Recherche 1136 Interactions Arbres/Microorganismes, Laboratoire D'excellence Recherches Avancées sur la Biologie de l'Arbre et les Ecosystèmes Forestiers (ARBRE), Centre INRA-Grand Est-Nancy, Champenoux, 54280, France.</nlm:affiliation></affiliation></author><author><name sortKey="Beaudet, Denis" sort="Beaudet, Denis" uniqKey="Beaudet D" first="Denis" last="Beaudet">Denis Beaudet</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Noel, Jessica" sort="Noel, Jessica" uniqKey="Noel J" first="Jessica" last="Noel">Jessica Noel</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Yildirir, Gokalp" sort="Yildirir, Gokalp" uniqKey="Yildirir G" first="Gokalp" last="Yildirir">Gokalp Yildirir</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Ndikumana, Steve" sort="Ndikumana, Steve" uniqKey="Ndikumana S" first="Steve" last="Ndikumana">Steve Ndikumana</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Charron, Philippe" sort="Charron, Philippe" uniqKey="Charron P" first="Philippe" last="Charron">Philippe Charron</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="St Onge, Camille" sort="St Onge, Camille" uniqKey="St Onge C" first="Camille" last="St-Onge">Camille St-Onge</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Giorgi, John" sort="Giorgi, John" uniqKey="Giorgi J" first="John" last="Giorgi">John Giorgi</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Kruger, Manuela" sort="Kruger, Manuela" uniqKey="Kruger M" first="Manuela" last="Krüger">Manuela Krüger</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Marton, Timea" sort="Marton, Timea" uniqKey="Marton T" first="Timea" last="Marton">Timea Marton</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Ropars, Jeanne" sort="Ropars, Jeanne" uniqKey="Ropars J" first="Jeanne" last="Ropars">Jeanne Ropars</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Grigoriev, Igor V" sort="Grigoriev, Igor V" uniqKey="Grigoriev I" first="Igor V" last="Grigoriev">Igor V. Grigoriev</name><affiliation><nlm:affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, CA, 94598, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Hainaut, Matthieu" sort="Hainaut, Matthieu" uniqKey="Hainaut M" first="Matthieu" last="Hainaut">Matthieu Hainaut</name><affiliation><nlm:affiliation>Architecture et Fonction des Macromolécules Biologiques, CNRS, Aix-Marseille Université, Marseille, 13288, France.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>INRA, USC 1408 AFMB, Marseille, F-13288, France.</nlm:affiliation></affiliation></author><author><name sortKey="Henrissat, Bernard" sort="Henrissat, Bernard" uniqKey="Henrissat B" first="Bernard" last="Henrissat">Bernard Henrissat</name><affiliation><nlm:affiliation>Architecture et Fonction des Macromolécules Biologiques, CNRS, Aix-Marseille Université, Marseille, 13288, France.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>INRA, USC 1408 AFMB, Marseille, F-13288, France.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Biological Sciences, King Abdulaziz University, Jeddah, 21589, Saudi Arabia.</nlm:affiliation></affiliation></author><author><name sortKey="Roux, Christophe" sort="Roux, Christophe" uniqKey="Roux C" first="Christophe" last="Roux">Christophe Roux</name><affiliation><nlm:affiliation>Laboratoire de Recherche en Sciences Végétales, UPS, CNRS 24 Chemin de Borde Rouge-Auzeville, Université de Toulouse, Castanet-Tolosan, 31326, France.</nlm:affiliation></affiliation></author><author><name sortKey="Martin, Francis" sort="Martin, Francis" uniqKey="Martin F" first="Francis" last="Martin">Francis Martin</name><affiliation><nlm:affiliation>Institut National de la Recherche Agronomique (INRA), Unité Mixte de Recherche 1136 Interactions Arbres/Microorganismes, Laboratoire D'excellence Recherches Avancées sur la Biologie de l'Arbre et les Ecosystèmes Forestiers (ARBRE), Centre INRA-Grand Est-Nancy, Champenoux, 54280, France.</nlm:affiliation></affiliation></author><author><name sortKey="Corradi, Nicolas" sort="Corradi, Nicolas" uniqKey="Corradi N" first="Nicolas" last="Corradi">Nicolas Corradi</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</nlm:affiliation></affiliation></author></analytic><series><title level="j">The New phytologist</title><idno type="eISSN">1469-8137</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Adaptation, Physiological (genetics)</term><term>DNA Transposable Elements (genetics)</term><term>Fungal Proteins (chemistry)</term><term>Genes, Fungal (MeSH)</term><term>Genetic Variation (MeSH)</term><term>Genome, Fungal (MeSH)</term><term>Glomeromycota (genetics)</term><term>Glomeromycota (isolation & purification)</term><term>Models, Biological (MeSH)</term><term>Molecular Sequence Annotation (MeSH)</term><term>Mycorrhizae (genetics)</term><term>Phylogeny (MeSH)</term><term>Protein Domains (MeSH)</term><term>Species Specificity (MeSH)</term><term>Symbiosis (genetics)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Fungal Proteins</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA Transposable Elements</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Adaptation, Physiological</term><term>Glomeromycota</term><term>Mycorrhizae</term><term>Symbiosis</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Glomeromycota</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genes, Fungal</term><term>Genetic Variation</term><term>Genome, Fungal</term><term>Models, Biological</term><term>Molecular Sequence Annotation</term><term>Phylogeny</term><term>Protein Domains</term><term>Species Specificity</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Arbuscular mycorrhizal fungi (AMF) are known to improve plant fitness through the establishment of mycorrhizal symbioses. Genetic and phenotypic variations among closely related AMF isolates can significantly affect plant growth, but the genomic changes underlying this variability are unclear. To address this issue, we improved the genome assembly and gene annotation of the model strain Rhizophagus irregularis DAOM197198, and compared its gene content with five isolates of R. irregularis sampled in the same field. All isolates harbor striking genome variations, with large numbers of isolate-specific genes, gene family expansions, and evidence of interisolate genetic exchange. The observed variability affects all gene ontology terms and PFAM protein domains, as well as putative mycorrhiza-induced small secreted effector-like proteins and other symbiosis differentially expressed genes. High variability is also found in active transposable elements. Overall, these findings indicate a substantial divergence in the functioning capacity of isolates harvested from the same field, and thus their genetic potential for adaptation to biotic and abiotic changes. Our data also provide a first glimpse into the genome diversity that resides within natural populations of these symbionts, and open avenues for future analyses of plant-AMF interactions that link AMF genome variation with plant phenotype and fitness.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">29355972</PMID><DateCompleted><Year>2019</Year><Month>09</Month><Day>25</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1469-8137</ISSN><JournalIssue CitedMedium="Internet"><Volume>220</Volume><Issue>4</Issue><PubDate><Year>2018</Year><Month>12</Month></PubDate></JournalIssue><Title>The New phytologist</Title><ISOAbbreviation>New Phytol</ISOAbbreviation></Journal><ArticleTitle>High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis.</ArticleTitle><Pagination><MedlinePgn>1161-1171</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/nph.14989</ELocationID><Abstract><AbstractText>Arbuscular mycorrhizal fungi (AMF) are known to improve plant fitness through the establishment of mycorrhizal symbioses. Genetic and phenotypic variations among closely related AMF isolates can significantly affect plant growth, but the genomic changes underlying this variability are unclear. To address this issue, we improved the genome assembly and gene annotation of the model strain Rhizophagus irregularis DAOM197198, and compared its gene content with five isolates of R. irregularis sampled in the same field. All isolates harbor striking genome variations, with large numbers of isolate-specific genes, gene family expansions, and evidence of interisolate genetic exchange. The observed variability affects all gene ontology terms and PFAM protein domains, as well as putative mycorrhiza-induced small secreted effector-like proteins and other symbiosis differentially expressed genes. High variability is also found in active transposable elements. Overall, these findings indicate a substantial divergence in the functioning capacity of isolates harvested from the same field, and thus their genetic potential for adaptation to biotic and abiotic changes. Our data also provide a first glimpse into the genome diversity that resides within natural populations of these symbionts, and open avenues for future analyses of plant-AMF interactions that link AMF genome variation with plant phenotype and fitness.</AbstractText><CopyrightInformation>© 2018 The Authors. New Phytologist © 2018 New Phytologist Trust.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Eric C H</ForeName><Initials>ECH</Initials><Identifier Source="ORCID">0000-0001-5367-7259</Identifier><AffiliationInfo><Affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Morin</LastName><ForeName>Emmanuelle</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Institut National de la Recherche Agronomique (INRA), Unité Mixte de Recherche 1136 Interactions Arbres/Microorganismes, Laboratoire D'excellence Recherches Avancées sur la Biologie de l'Arbre et les Ecosystèmes Forestiers (ARBRE), Centre INRA-Grand Est-Nancy, Champenoux, 54280, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Beaudet</LastName><ForeName>Denis</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Noel</LastName><ForeName>Jessica</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yildirir</LastName><ForeName>Gokalp</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ndikumana</LastName><ForeName>Steve</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Charron</LastName><ForeName>Philippe</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>St-Onge</LastName><ForeName>Camille</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Giorgi</LastName><ForeName>John</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Krüger</LastName><ForeName>Manuela</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Marton</LastName><ForeName>Timea</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ropars</LastName><ForeName>Jeanne</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Grigoriev</LastName><ForeName>Igor V</ForeName><Initials>IV</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute (JGI), Walnut Creek, CA, 94598, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hainaut</LastName><ForeName>Matthieu</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Architecture et Fonction des Macromolécules Biologiques, CNRS, Aix-Marseille Université, Marseille, 13288, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>INRA, USC 1408 AFMB, Marseille, F-13288, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Henrissat</LastName><ForeName>Bernard</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Architecture et Fonction des Macromolécules Biologiques, CNRS, Aix-Marseille Université, Marseille, 13288, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>INRA, USC 1408 AFMB, Marseille, F-13288, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Biological Sciences, King Abdulaziz University, Jeddah, 21589, Saudi Arabia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Roux</LastName><ForeName>Christophe</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Laboratoire de Recherche en Sciences Végétales, UPS, CNRS 24 Chemin de Borde Rouge-Auzeville, Université de Toulouse, Castanet-Tolosan, 31326, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Martin</LastName><ForeName>Francis</ForeName><Initials>F</Initials><Identifier Source="ORCID">0000-0002-4737-3715</Identifier><AffiliationInfo><Affiliation>Institut National de la Recherche Agronomique (INRA), Unité Mixte de Recherche 1136 Interactions Arbres/Microorganismes, Laboratoire D'excellence Recherches Avancées sur la Biologie de l'Arbre et les Ecosystèmes Forestiers (ARBRE), Centre INRA-Grand Est-Nancy, Champenoux, 54280, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Corradi</LastName><ForeName>Nicolas</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Ottawa, Ottawa, ON, K1N9A7, Canada.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><Agency>Natural Sciences and Engineering Research Council of Canada</Agency><Country>International</Country></Grant><Grant><Agency>Early Researcher Award</Agency><Country>International</Country></Grant><Grant><GrantID>ER13-09-190</GrantID><Agency>Ontario Ministry of Research and Innovation</Agency><Country>International</Country></Grant><Grant><GrantID>DEB 1441677</GrantID><Agency>National Science Foundation</Agency><Country>International</Country></Grant><Grant><GrantID>ANR-11-LABX-0002-01</GrantID><Agency>Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems</Agency><Country>International</Country></Grant><Grant><Agency>Region Lorraine Research Council</Agency><Country>International</Country></Grant><Grant><Agency>European Commission</Agency><Country>International</Country></Grant><Grant><Agency>European Regional Development Fund</Agency><Country>International</Country></Grant><Grant><Agency>European Social Fund</Agency><Country>International</Country></Grant><Grant><GrantID>CZ.1.07/2.3.00/30.0048</GrantID><Agency>Operational Programme Education for Competitiveness (OPEC)</Agency><Country>International</Country></Grant><Grant><GrantID>DE-AC02-05CH11231</GrantID><Agency>US DOE JGI</Agency><Country>International</Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>01</Month><Day>22</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>New Phytol</MedlineTA><NlmUniqueID>9882884</NlmUniqueID><ISSNLinking>0028-646X</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004251">DNA Transposable Elements</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005656">Fungal Proteins</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000222" MajorTopicYN="N">Adaptation, Physiological</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004251" MajorTopicYN="N">DNA Transposable Elements</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005656" MajorTopicYN="N">Fungal Proteins</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005800" MajorTopicYN="N">Genes, Fungal</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="Y">Genetic Variation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016681" MajorTopicYN="Y">Genome, Fungal</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D055137" MajorTopicYN="N">Glomeromycota</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008954" MajorTopicYN="Y">Models, Biological</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D058977" MajorTopicYN="N">Molecular Sequence Annotation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D038821" MajorTopicYN="N">Mycorrhizae</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000072417" MajorTopicYN="N">Protein Domains</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013045" MajorTopicYN="N">Species Specificity</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013559" MajorTopicYN="N">Symbiosis</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Rhizophagus irregularis
</Keyword><Keyword MajorTopicYN="Y">arbuscular mycorrhizal fungi (AMF)</Keyword><Keyword MajorTopicYN="Y">gene exchange</Keyword><Keyword MajorTopicYN="Y">intraspecific variation</Keyword><Keyword MajorTopicYN="Y">pan-genome</Keyword><Keyword MajorTopicYN="Y">transposable elements</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>11</Month><Day>01</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2017</Year><Month>12</Month><Day>03</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>1</Month><Day>23</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>9</Month><Day>26</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>1</Month><Day>23</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">29355972</ArticleId><ArticleId IdType="doi">10.1111/nph.14989</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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