Russulaceae: a new genomic dataset to study ecosystem function and evolutionary diversification of ectomycorrhizal fungi with their tree associates.
Identifieur interne : 000995 ( Main/Corpus ); précédent : 000994; suivant : 000996Russulaceae: a new genomic dataset to study ecosystem function and evolutionary diversification of ectomycorrhizal fungi with their tree associates.
Auteurs : Brian P. Looney ; Peter Meidl ; Marek J. Piatek ; Otto Miettinen ; Francis M. Martin ; P Brandon Matheny ; Jessy L. LabbéSource :
- The New phytologist [ 1469-8137 ] ; 2018.
English descriptors
- KwdEn :
- MESH :
- genetics : Basidiomycota.
- growth & development : Basidiomycota.
- microbiology : Trees.
- physiology : Basidiomycota, Mycorrhizae.
- Biological Evolution, Ecosystem, Genome, Fungal.
Abstract
The family Russulaceae is considered an iconic lineage of mostly mushroom-forming basidiomycetes due to their importance as edible mushrooms in many parts of the world, and their ubiquity as ectomycorrhizal symbionts in both temperate and tropical forested biomes. Although much research has been focused on this group, a comprehensive or cohesive synthesis by which to understand the functional diversity of the group has yet to develop. Interest in ectomycorrhizal fungi, of which Russulaceae is a key lineage, is prodigious due to the important roles they play as plant root mutualists in ecosystem functioning, global carbon sequestration, and a potential role in technology development toward environmental sustainability. As one of the most species-diverse ectomycorrhizal lineages, the Russulaceae has recently been the focus of a dense sampling and genome sequencing initiative with the Joint Genome Institute aimed at untangling their functional roles and testing whether functional niche specialization exists for independent lineages of ectomycorrhizal fungi. Here we present a review of important studies on this group to contextualize what we know about its members' evolutionary history and ecosystem functions, as well as to generate hypotheses establishing the Russulaceae as a valuable experimental system.
DOI: 10.1111/nph.15001
PubMed: 29381218
Links to Exploration step
pubmed:29381218Le document en format XML
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Looney</name><affiliation><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN 37996, USA.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>INRA Université de Lorraine, UMR Interactions Arbres-Microorganismes, Laboratoire d'excellence ARBRE, 54280 Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Meidl, Peter" sort="Meidl, Peter" uniqKey="Meidl P" first="Peter" last="Meidl">Peter Meidl</name><affiliation><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Piatek, Marek J" sort="Piatek, Marek J" uniqKey="Piatek M" first="Marek J" last="Piatek">Marek J. 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Looney</name><affiliation><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN 37996, USA.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>INRA Université de Lorraine, UMR Interactions Arbres-Microorganismes, Laboratoire d'excellence ARBRE, 54280 Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Meidl, Peter" sort="Meidl, Peter" uniqKey="Meidl P" first="Peter" last="Meidl">Peter Meidl</name><affiliation><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Piatek, Marek J" sort="Piatek, Marek J" uniqKey="Piatek M" first="Marek J" last="Piatek">Marek J. 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Martin</name><affiliation><nlm:affiliation>INRA Université de Lorraine, UMR Interactions Arbres-Microorganismes, Laboratoire d'excellence ARBRE, 54280 Champenoux, France.</nlm:affiliation></affiliation></author><author><name sortKey="Matheny, P Brandon" sort="Matheny, P Brandon" uniqKey="Matheny P" first="P Brandon" last="Matheny">P Brandon Matheny</name><affiliation><nlm:affiliation>Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN 37996, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Labbe, Jessy L" sort="Labbe, Jessy L" uniqKey="Labbe J" first="Jessy L" last="Labbé">Jessy L. Labbé</name><affiliation><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, TN 37996, USA.</nlm:affiliation></affiliation></author></analytic><series><title level="j">The New phytologist</title><idno type="eISSN">1469-8137</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Basidiomycota (genetics)</term><term>Basidiomycota (growth & development)</term><term>Basidiomycota (physiology)</term><term>Biological Evolution (MeSH)</term><term>Ecosystem (MeSH)</term><term>Genome, Fungal (MeSH)</term><term>Mycorrhizae (physiology)</term><term>Trees (microbiology)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Trees</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Basidiomycota</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Biological Evolution</term><term>Ecosystem</term><term>Genome, Fungal</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The family Russulaceae is considered an iconic lineage of mostly mushroom-forming basidiomycetes due to their importance as edible mushrooms in many parts of the world, and their ubiquity as ectomycorrhizal symbionts in both temperate and tropical forested biomes. Although much research has been focused on this group, a comprehensive or cohesive synthesis by which to understand the functional diversity of the group has yet to develop. Interest in ectomycorrhizal fungi, of which Russulaceae is a key lineage, is prodigious due to the important roles they play as plant root mutualists in ecosystem functioning, global carbon sequestration, and a potential role in technology development toward environmental sustainability. As one of the most species-diverse ectomycorrhizal lineages, the Russulaceae has recently been the focus of a dense sampling and genome sequencing initiative with the Joint Genome Institute aimed at untangling their functional roles and testing whether functional niche specialization exists for independent lineages of ectomycorrhizal fungi. Here we present a review of important studies on this group to contextualize what we know about its members' evolutionary history and ecosystem functions, as well as to generate hypotheses establishing the Russulaceae as a valuable experimental system.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">29381218</PMID><DateCompleted><Year>2019</Year><Month>09</Month><Day>27</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1469-8137</ISSN><JournalIssue CitedMedium="Internet"><Volume>218</Volume><Issue>1</Issue><PubDate><Year>2018</Year><Month>04</Month></PubDate></JournalIssue><Title>The New phytologist</Title><ISOAbbreviation>New Phytol</ISOAbbreviation></Journal><ArticleTitle>Russulaceae: a new genomic dataset to study ecosystem function and evolutionary diversification of ectomycorrhizal fungi with their tree associates.</ArticleTitle><Pagination><MedlinePgn>54-65</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/nph.15001</ELocationID><Abstract><AbstractText>The family Russulaceae is considered an iconic lineage of mostly mushroom-forming basidiomycetes due to their importance as edible mushrooms in many parts of the world, and their ubiquity as ectomycorrhizal symbionts in both temperate and tropical forested biomes. Although much research has been focused on this group, a comprehensive or cohesive synthesis by which to understand the functional diversity of the group has yet to develop. Interest in ectomycorrhizal fungi, of which Russulaceae is a key lineage, is prodigious due to the important roles they play as plant root mutualists in ecosystem functioning, global carbon sequestration, and a potential role in technology development toward environmental sustainability. As one of the most species-diverse ectomycorrhizal lineages, the Russulaceae has recently been the focus of a dense sampling and genome sequencing initiative with the Joint Genome Institute aimed at untangling their functional roles and testing whether functional niche specialization exists for independent lineages of ectomycorrhizal fungi. Here we present a review of important studies on this group to contextualize what we know about its members' evolutionary history and ecosystem functions, as well as to generate hypotheses establishing the Russulaceae as a valuable experimental system.</AbstractText><CopyrightInformation>© 2018 UT-Battelle New Phytologist © 2018 New Phytologist Trust.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Looney</LastName><ForeName>Brian P</ForeName><Initials>BP</Initials><Identifier Source="ORCID">0000-0001-5342-9909</Identifier><AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN 37996, USA.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>INRA Université de Lorraine, UMR Interactions Arbres-Microorganismes, Laboratoire d'excellence ARBRE, 54280 Champenoux, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Meidl</LastName><ForeName>Peter</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Piatek</LastName><ForeName>Marek J</ForeName><Initials>MJ</Initials><AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Miettinen</LastName><ForeName>Otto</ForeName><Initials>O</Initials><Identifier Source="ORCID">0000-0001-7502-710X</Identifier><AffiliationInfo><Affiliation>Finnish Museum of Natural History, University of Helsinki, Helsinki 00170, Finland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Martin</LastName><ForeName>Francis M</ForeName><Initials>FM</Initials><Identifier Source="ORCID">0000-0002-4737-3715</Identifier><AffiliationInfo><Affiliation>INRA Université de Lorraine, UMR Interactions Arbres-Microorganismes, Laboratoire d'excellence ARBRE, 54280 Champenoux, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Matheny</LastName><ForeName>P Brandon</ForeName><Initials>PB</Initials><AffiliationInfo><Affiliation>Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN 37996, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Labbé</LastName><ForeName>Jessy L</ForeName><Initials>JL</Initials><Identifier Source="ORCID">0000-0003-0368-2054</Identifier><AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, TN 37996, USA.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType><PublicationType UI="D016454">Review</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>01</Month><Day>30</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>New Phytol</MedlineTA><NlmUniqueID>9882884</NlmUniqueID><ISSNLinking>0028-646X</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001487" MajorTopicYN="N">Basidiomycota</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005075" MajorTopicYN="Y">Biological Evolution</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017753" MajorTopicYN="Y">Ecosystem</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016681" MajorTopicYN="Y">Genome, Fungal</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D038821" MajorTopicYN="N">Mycorrhizae</DescriptorName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014197" MajorTopicYN="N">Trees</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">decomposition</Keyword><Keyword MajorTopicYN="Y">functional diversity</Keyword><Keyword MajorTopicYN="Y">fungal niche</Keyword><Keyword MajorTopicYN="Y">secondary metabolism</Keyword><Keyword MajorTopicYN="Y">symbiosis</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>09</Month><Day>08</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2017</Year><Month>12</Month><Day>13</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>1</Month><Day>31</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>9</Month><Day>29</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>1</Month><Day>31</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">29381218</ArticleId><ArticleId IdType="doi">10.1111/nph.15001</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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