Microbial community assembly differs across minerals in a rhizosphere microcosm.
Identifieur interne : 000792 ( Main/Corpus ); précédent : 000791; suivant : 000793Microbial community assembly differs across minerals in a rhizosphere microcosm.
Auteurs : Thea Whitman ; Rachel Neurath ; Adele Perera ; Ilexis Chu-Jacoby ; Daliang Ning ; Jizhong Zhou ; Peter Nico ; Jennifer Pett-Ridge ; Mary FirestoneSource :
- Environmental microbiology [ 1462-2920 ] ; 2018.
English descriptors
- KwdEn :
- MESH :
- chemical , metabolism : Minerals.
- growth & development : Bacteria.
- metabolism : Bacteria, Mycorrhizae.
- microbiology : Avena, Plant Roots.
- Microbiota, Rhizosphere, Soil Microbiology.
Abstract
Mineral-associated microbes drive many critical soil processes, including mineral weathering, soil aggregation and cycling of mineral-sorbed organic matter. To investigate the interactions between soil minerals and microbes in the rhizosphere, we incubated three types of minerals (ferrihydrite, kaolinite and quartz) and a native soil mineral fraction near roots of a common Californian annual grass, Avena barbata, growing in its resident soil. We followed microbial colonization of these minerals for up to 2.5 months - the plant's lifespan. Bacteria and fungi that colonized mineral surfaces during this experiment differed across mineral types and differed from those in the background soil, implying that microbial colonization was the result of processes in addition to passive movement with water to mineral surfaces. Null model analysis revealed that dispersal limitation was a dominant factor structuring mineral-associated microbial communities for all mineral types. Once bacteria arrived at a mineral surface, capacity for rapid growth appeared important, as ribosomal copy number was significantly correlated with relative enrichment on minerals. Glomeromycota (a phylum associated with arbuscular mycorrhizal fungi) appeared to preferentially associate with ferrihydrite surfaces. The mechanisms enabling the colonization of soil minerals may be foundational in shaping the overall soil microbiome composition and development of persistent organic matter in soils.
DOI: 10.1111/1462-2920.14366
PubMed: 30047192
Links to Exploration step
pubmed:30047192Le document en format XML
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<author><name sortKey="Chu Jacoby, Ilexis" sort="Chu Jacoby, Ilexis" uniqKey="Chu Jacoby I" first="Ilexis" last="Chu-Jacoby">Ilexis Chu-Jacoby</name>
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</affiliation>
<affiliation><nlm:affiliation>Institute for Environmental Genomics, University of Oklahoma, Norman, OK, USA.</nlm:affiliation>
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<affiliation><nlm:affiliation>Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, USA.</nlm:affiliation>
</affiliation>
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<author><name sortKey="Zhou, Jizhong" sort="Zhou, Jizhong" uniqKey="Zhou J" first="Jizhong" last="Zhou">Jizhong Zhou</name>
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<affiliation><nlm:affiliation>State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China.</nlm:affiliation>
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<term>Minerals (metabolism)</term>
<term>Mycorrhizae (metabolism)</term>
<term>Plant Roots (microbiology)</term>
<term>Rhizosphere (MeSH)</term>
<term>Soil Microbiology (MeSH)</term>
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<front><div type="abstract" xml:lang="en">Mineral-associated microbes drive many critical soil processes, including mineral weathering, soil aggregation and cycling of mineral-sorbed organic matter. To investigate the interactions between soil minerals and microbes in the rhizosphere, we incubated three types of minerals (ferrihydrite, kaolinite and quartz) and a native soil mineral fraction near roots of a common Californian annual grass, Avena barbata, growing in its resident soil. We followed microbial colonization of these minerals for up to 2.5 months - the plant's lifespan. Bacteria and fungi that colonized mineral surfaces during this experiment differed across mineral types and differed from those in the background soil, implying that microbial colonization was the result of processes in addition to passive movement with water to mineral surfaces. Null model analysis revealed that dispersal limitation was a dominant factor structuring mineral-associated microbial communities for all mineral types. Once bacteria arrived at a mineral surface, capacity for rapid growth appeared important, as ribosomal copy number was significantly correlated with relative enrichment on minerals. Glomeromycota (a phylum associated with arbuscular mycorrhizal fungi) appeared to preferentially associate with ferrihydrite surfaces. The mechanisms enabling the colonization of soil minerals may be foundational in shaping the overall soil microbiome composition and development of persistent organic matter in soils.</div>
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<Abstract><AbstractText>Mineral-associated microbes drive many critical soil processes, including mineral weathering, soil aggregation and cycling of mineral-sorbed organic matter. To investigate the interactions between soil minerals and microbes in the rhizosphere, we incubated three types of minerals (ferrihydrite, kaolinite and quartz) and a native soil mineral fraction near roots of a common Californian annual grass, Avena barbata, growing in its resident soil. We followed microbial colonization of these minerals for up to 2.5 months - the plant's lifespan. Bacteria and fungi that colonized mineral surfaces during this experiment differed across mineral types and differed from those in the background soil, implying that microbial colonization was the result of processes in addition to passive movement with water to mineral surfaces. Null model analysis revealed that dispersal limitation was a dominant factor structuring mineral-associated microbial communities for all mineral types. Once bacteria arrived at a mineral surface, capacity for rapid growth appeared important, as ribosomal copy number was significantly correlated with relative enrichment on minerals. Glomeromycota (a phylum associated with arbuscular mycorrhizal fungi) appeared to preferentially associate with ferrihydrite surfaces. The mechanisms enabling the colonization of soil minerals may be foundational in shaping the overall soil microbiome composition and development of persistent organic matter in soils.</AbstractText>
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</AffiliationInfo>
<AffiliationInfo><Affiliation>School of Civil Engineering and Environmental Sciences, University of Oklahoma, Norman, OK, USA.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Lawrence Berkeley National Laboratory, Earth and Environmental Sciences, Berkeley, CA, USA.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China.</Affiliation>
</AffiliationInfo>
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