Single nucleus sequencing reveals evidence of inter-nucleus recombination in arbuscular mycorrhizal fungi.
Identifieur interne : 000650 ( Main/Corpus ); précédent : 000649; suivant : 000651Single nucleus sequencing reveals evidence of inter-nucleus recombination in arbuscular mycorrhizal fungi.
Auteurs : Eric Ch Chen ; Stephanie Mathieu ; Anne Hoffrichter ; Kinga Sedzielewska-Toro ; Max Peart ; Adrian Pelin ; Steve Ndikumana ; Jeanne Ropars ; Steven Dreissig ; Jorg Fuchs ; Andreas Brachmann ; Nicolas CorradiSource :
- eLife [ 2050-084X ] ; 2018.
English descriptors
- KwdEn :
- Cell Nucleus (genetics), Cell Nucleus (ultrastructure), Cytoplasm (genetics), Cytoplasm (ultrastructure), DNA, Fungal (genetics), Genetic Variation (MeSH), Genome, Fungal (MeSH), Genotype (MeSH), Mycorrhizae (genetics), Plants (microbiology), Polymorphism, Single Nucleotide (MeSH), Recombination, Genetic (MeSH), Sequence Analysis, DNA (MeSH), Symbiosis (MeSH).
- MESH :
- chemical , genetics : DNA, Fungal.
- genetics : Cell Nucleus, Cytoplasm, Mycorrhizae.
- microbiology : Plants.
- ultrastructure : Cell Nucleus, Cytoplasm.
- Genetic Variation, Genome, Fungal, Genotype, Polymorphism, Single Nucleotide, Recombination, Genetic, Sequence Analysis, DNA, Symbiosis.
Abstract
Eukaryotes thought to have evolved clonally for millions of years are referred to as ancient asexuals. The oldest group among these are the arbuscular mycorrhizal fungi (AMF), which are plant symbionts harboring hundreds of nuclei within one continuous cytoplasm. Some AMF strains (dikaryons) harbor two co-existing nucleotypes but there is no direct evidence that such nuclei recombine in this life-stage, as is expected for sexual fungi. Here, we show that AMF nuclei with distinct genotypes can undergo recombination. Inter-nuclear genetic exchange varies in frequency among strains, and despite recombination all nuclear genomes have an average similarity of at least 99.8%. The present study demonstrates that AMF can generate genetic diversity via meiotic-like processes in the absence of observable mating. The AMF dikaryotic life-stage is a primary source of nuclear variability in these organisms, highlighting its potential for strain enhancement of these symbionts.
DOI: 10.7554/eLife.39813
PubMed: 30516133
PubMed Central: PMC6281316
Links to Exploration step
pubmed:30516133Le document en format XML
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of Munich, Munich, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Sedzielewska Toro, Kinga" sort="Sedzielewska Toro, Kinga" uniqKey="Sedzielewska Toro K" first="Kinga" last="Sedzielewska-Toro">Kinga Sedzielewska-Toro</name><affiliation><nlm:affiliation>Institute of Genetics, Faculty of Biology, Ludwig Maximilian University of Munich, Munich, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Peart, Max" sort="Peart, Max" uniqKey="Peart M" first="Max" last="Peart">Max Peart</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Pelin, Adrian" sort="Pelin, Adrian" uniqKey="Pelin A" first="Adrian" last="Pelin">Adrian Pelin</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Ndikumana, Steve" sort="Ndikumana, Steve" uniqKey="Ndikumana S" first="Steve" last="Ndikumana">Steve Ndikumana</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Ropars, Jeanne" sort="Ropars, Jeanne" uniqKey="Ropars J" first="Jeanne" last="Ropars">Jeanne Ropars</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Dreissig, Steven" sort="Dreissig, Steven" uniqKey="Dreissig S" first="Steven" last="Dreissig">Steven Dreissig</name><affiliation><nlm:affiliation>Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Fuchs, Jorg" sort="Fuchs, Jorg" uniqKey="Fuchs J" first="Jorg" last="Fuchs">Jorg Fuchs</name><affiliation><nlm:affiliation>Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Brachmann, Andreas" sort="Brachmann, Andreas" uniqKey="Brachmann A" first="Andreas" last="Brachmann">Andreas Brachmann</name><affiliation><nlm:affiliation>Institute of Genetics, Faculty of Biology, Ludwig Maximilian University of Munich, Munich, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Corradi, Nicolas" sort="Corradi, Nicolas" uniqKey="Corradi N" first="Nicolas" last="Corradi">Nicolas Corradi</name><affiliation><nlm:affiliation>Department of Biology, University of Ottawa, Ottawa, Canada.</nlm:affiliation></affiliation></author></analytic><series><title level="j">eLife</title><idno type="eISSN">2050-084X</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Cell Nucleus (genetics)</term><term>Cell Nucleus (ultrastructure)</term><term>Cytoplasm (genetics)</term><term>Cytoplasm (ultrastructure)</term><term>DNA, Fungal (genetics)</term><term>Genetic Variation (MeSH)</term><term>Genome, Fungal (MeSH)</term><term>Genotype (MeSH)</term><term>Mycorrhizae (genetics)</term><term>Plants (microbiology)</term><term>Polymorphism, Single Nucleotide (MeSH)</term><term>Recombination, Genetic (MeSH)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Symbiosis (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Fungal</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Cell Nucleus</term><term>Cytoplasm</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plants</term></keywords><keywords scheme="MESH" qualifier="ultrastructure" xml:lang="en"><term>Cell Nucleus</term><term>Cytoplasm</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genetic Variation</term><term>Genome, Fungal</term><term>Genotype</term><term>Polymorphism, Single Nucleotide</term><term>Recombination, Genetic</term><term>Sequence Analysis, DNA</term><term>Symbiosis</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Eukaryotes thought to have evolved clonally for millions of years are referred to as ancient asexuals. The oldest group among these are the arbuscular mycorrhizal fungi (AMF), which are plant symbionts harboring hundreds of nuclei within one continuous cytoplasm. Some AMF strains (dikaryons) harbor two co-existing nucleotypes but there is no direct evidence that such nuclei recombine in this life-stage, as is expected for sexual fungi. Here, we show that AMF nuclei with distinct genotypes can undergo recombination. Inter-nuclear genetic exchange varies in frequency among strains, and despite recombination all nuclear genomes have an average similarity of at least 99.8%. The present study demonstrates that AMF can generate genetic diversity via meiotic-like processes in the absence of observable mating. The AMF dikaryotic life-stage is a primary source of nuclear variability in these organisms, highlighting its potential for strain enhancement of these symbionts.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30516133</PMID><DateCompleted><Year>2019</Year><Month>03</Month><Day>14</Day></DateCompleted><DateRevised><Year>2020</Year><Month>03</Month><Day>09</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2050-084X</ISSN><JournalIssue CitedMedium="Internet"><Volume>7</Volume><PubDate><Year>2018</Year><Month>12</Month><Day>05</Day></PubDate></JournalIssue><Title>eLife</Title><ISOAbbreviation>Elife</ISOAbbreviation></Journal><ArticleTitle>Single nucleus sequencing reveals evidence of inter-nucleus recombination in arbuscular mycorrhizal fungi.</ArticleTitle><ELocationID EIdType="doi" ValidYN="Y">10.7554/eLife.39813</ELocationID><ELocationID EIdType="pii" ValidYN="Y">e39813</ELocationID><Abstract><AbstractText>Eukaryotes thought to have evolved clonally for millions of years are referred to as ancient asexuals. The oldest group among these are the arbuscular mycorrhizal fungi (AMF), which are plant symbionts harboring hundreds of nuclei within one continuous cytoplasm. Some AMF strains (dikaryons) harbor two co-existing nucleotypes but there is no direct evidence that such nuclei recombine in this life-stage, as is expected for sexual fungi. Here, we show that AMF nuclei with distinct genotypes can undergo recombination. Inter-nuclear genetic exchange varies in frequency among strains, and despite recombination all nuclear genomes have an average similarity of at least 99.8%. The present study demonstrates that AMF can generate genetic diversity via meiotic-like processes in the absence of observable mating. The AMF dikaryotic life-stage is a primary source of nuclear variability in these organisms, highlighting its potential for strain enhancement of these symbionts.</AbstractText><CopyrightInformation>© 2018, Chen et al.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Eric Ch</ForeName><Initials>EC</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Ottawa, Ottawa, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mathieu</LastName><ForeName>Stephanie</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Ottawa, Ottawa, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hoffrichter</LastName><ForeName>Anne</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Institute of Genetics, Faculty of Biology, Ludwig Maximilian University of Munich, Munich, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sedzielewska-Toro</LastName><ForeName>Kinga</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Institute of Genetics, Faculty of Biology, Ludwig Maximilian University of Munich, Munich, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Peart</LastName><ForeName>Max</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Ottawa, Ottawa, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pelin</LastName><ForeName>Adrian</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Ottawa, Ottawa, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ndikumana</LastName><ForeName>Steve</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Ottawa, Ottawa, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ropars</LastName><ForeName>Jeanne</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Ottawa, Ottawa, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dreissig</LastName><ForeName>Steven</ForeName><Initials>S</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-4766-9698</Identifier><AffiliationInfo><Affiliation>Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fuchs</LastName><ForeName>Jorg</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Brachmann</LastName><ForeName>Andreas</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Institute of Genetics, Faculty of Biology, Ludwig Maximilian University of Munich, Munich, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Corradi</LastName><ForeName>Nicolas</ForeName><Initials>N</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-7932-7932</Identifier><AffiliationInfo><Affiliation>Department of Biology, University of Ottawa, Ottawa, Canada.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>12</Month><Day>05</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Elife</MedlineTA><NlmUniqueID>101579614</NlmUniqueID><ISSNLinking>2050-084X</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004271">DNA, Fungal</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><CommentsCorrectionsList><CommentsCorrections RefType="ErratumIn"><RefSource>Elife. 2019 Mar 21;8:</RefSource><PMID Version="1">30895927</PMID></CommentsCorrections><CommentsCorrections RefType="CommentIn"><RefSource>Elife. 2019 Oct 25;8:</RefSource><PMID Version="1">31650958</PMID></CommentsCorrections></CommentsCorrectionsList><MeshHeadingList><MeshHeading><DescriptorName UI="D002467" MajorTopicYN="N">Cell Nucleus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000648" MajorTopicYN="N">ultrastructure</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D003593" MajorTopicYN="N">Cytoplasm</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000648" MajorTopicYN="N">ultrastructure</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004271" MajorTopicYN="N">DNA, Fungal</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="N">Genetic Variation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016681" MajorTopicYN="Y">Genome, Fungal</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D038821" MajorTopicYN="N">Mycorrhizae</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010944" MajorTopicYN="N">Plants</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020641" MajorTopicYN="N">Polymorphism, Single Nucleotide</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D011995" MajorTopicYN="Y">Recombination, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013559" MajorTopicYN="N">Symbiosis</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">S. cerevisiae</Keyword><Keyword MajorTopicYN="Y">arbuscular mycorrhizal fungi</Keyword><Keyword MajorTopicYN="Y">evolutionary biology</Keyword><Keyword MajorTopicYN="Y">genetics</Keyword><Keyword MajorTopicYN="Y">genomics</Keyword><Keyword MajorTopicYN="Y">meiosis</Keyword><Keyword MajorTopicYN="Y">recombination</Keyword><Keyword MajorTopicYN="Y">sexual reproduction</Keyword><Keyword MajorTopicYN="Y">single nucleus sequencing</Keyword></KeywordList><CoiStatement>EC, SM, AH, KS, MP, AP, SN, JR, SD, JF, AB, NC No competing interests declared</CoiStatement></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year><Month>07</Month><Day>03</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2018</Year><Month>11</Month><Day>16</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>12</Month><Day>6</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>12</Month><Day>6</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>3</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">30516133</ArticleId><ArticleId 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