MycorrhizaeV1, Main, Corpus, bibRecord, 000622

Impact of Introduction of Arbuscular Mycorrhizal Fungi on the Root Microbial Community in Agricultural Fields.

Identifieur interne : 000622 ( Main/Corpus ); précédent : 000621; suivant : 000623

Impact of Introduction of Arbuscular Mycorrhizal Fungi on the Root Microbial Community in Agricultural Fields.

Auteurs : Turgut Yigit Akyol ; Rieko Niwa ; Hideki Hirakawa ; Hayato Maruyama ; Takumi Sato ; Takae Suzuki ; Ayako Fukunaga ; Takashi Sato ; Shigenobu Yoshida ; Keitaro Tawaraya ; Masanori Saito ; Tatsuhiro Ezawa ; Shusei Sato

Source :

Microbes and environments [ 1347-4405 ] ; 2019.

RBID : pubmed:30584188

English descriptors

KwdEn :
- Agriculture (MeSH), Bacteria (classification), Bacteria (genetics), Bacteria (growth & development), Bacteria (isolation & purification), Fungi (classification), Fungi (genetics), Fungi (growth & development), Fungi (isolation & purification), Microbiota (MeSH), Mycorrhizae (classification), Mycorrhizae (physiology), Onions (growth & development), Onions (microbiology), Phosphorus (chemistry), Plant Roots (microbiology), RNA, Ribosomal, 16S (genetics), Soil (chemistry), Soil Microbiology (MeSH), Symbiosis (MeSH).
MESH :
- chemical , chemistry : Phosphorus, Soil.
- classification : Bacteria, Fungi, Mycorrhizae.
- genetics : Bacteria, Fungi, RNA, Ribosomal, 16S.
- growth & development : Bacteria, Fungi, Onions.
- isolation & purification : Bacteria, Fungi.
- microbiology : Onions, Plant Roots.
- physiology : Mycorrhizae.
- Agriculture, Microbiota, Soil Microbiology, Symbiosis.

Abstract

Arbuscular mycorrhizal (AM) fungi are important members of the root microbiome and may be used as biofertilizers for sustainable agriculture. To elucidate the impact of AM fungal inoculation on indigenous root microbial communities, we used high-throughput sequencing and an analytical pipeline providing fixed operational taxonomic units (OTUs) as an output to investigate the bacterial and fungal communities of roots treated with a commercial AM fungal inoculum in six agricultural fields. AM fungal inoculation significantly influenced the root microbial community structure in all fields. Inoculation changed the abundance of indigenous AM fungi and other fungal members in a field-dependent manner. Inoculation consistently enriched several bacterial OTUs by changing the abundance of indigenous bacteria and introducing new bacteria. Some inoculum-associated bacteria closely interacted with the introduced AM fungi, some of which belonged to the genera Burkholderia, Cellulomonas, Microbacterium, Sphingomonas, and Streptomyces and may be candidate mycorrhizospheric bacteria that contribute to the establishment and/or function of the introduced AM fungi. Inoculated AM fungi also co-occurred with several indigenous bacteria with putative beneficial traits, suggesting that inoculated AM fungi may recruit specific taxa to confer better plant performance. The bacterial families Methylobacteriaceae, Acetobacteraceae, Armatimonadaceae, and Alicyclobacillaceae were consistently reduced by the inoculation, possibly due to changes in the host plant status caused by the inoculum. To the best of our knowledge, this is the first large-scale study to investigate interactions between AM fungal inoculation and indigenous root microbial communities in agricultural fields.

DOI: 10.1264/jsme2.ME18109
PubMed: 30584188
PubMed Central: PMC6440726

Links to Exploration step

pubmed:30584188

Le document en format XML

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<term>Soil</term>
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<front><div type="abstract" xml:lang="en">Arbuscular mycorrhizal (AM) fungi are important members of the root microbiome and may be used as biofertilizers for sustainable agriculture. To elucidate the impact of AM fungal inoculation on indigenous root microbial communities, we used high-throughput sequencing and an analytical pipeline providing fixed operational taxonomic units (OTUs) as an output to investigate the bacterial and fungal communities of roots treated with a commercial AM fungal inoculum in six agricultural fields. AM fungal inoculation significantly influenced the root microbial community structure in all fields. Inoculation changed the abundance of indigenous AM fungi and other fungal members in a field-dependent manner. Inoculation consistently enriched several bacterial OTUs by changing the abundance of indigenous bacteria and introducing new bacteria. Some inoculum-associated bacteria closely interacted with the introduced AM fungi, some of which belonged to the genera Burkholderia, Cellulomonas, Microbacterium, Sphingomonas, and Streptomyces and may be candidate mycorrhizospheric bacteria that contribute to the establishment and/or function of the introduced AM fungi. Inoculated AM fungi also co-occurred with several indigenous bacteria with putative beneficial traits, suggesting that inoculated AM fungi may recruit specific taxa to confer better plant performance. The bacterial families Methylobacteriaceae, Acetobacteraceae, Armatimonadaceae, and Alicyclobacillaceae were consistently reduced by the inoculation, possibly due to changes in the host plant status caused by the inoculum. To the best of our knowledge, this is the first large-scale study to investigate interactions between AM fungal inoculation and indigenous root microbial communities in agricultural fields.</div>
</front>
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<ArticleTitle>Impact of Introduction of Arbuscular Mycorrhizal Fungi on the Root Microbial Community in Agricultural Fields.</ArticleTitle>
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<Abstract><AbstractText>Arbuscular mycorrhizal (AM) fungi are important members of the root microbiome and may be used as biofertilizers for sustainable agriculture. To elucidate the impact of AM fungal inoculation on indigenous root microbial communities, we used high-throughput sequencing and an analytical pipeline providing fixed operational taxonomic units (OTUs) as an output to investigate the bacterial and fungal communities of roots treated with a commercial AM fungal inoculum in six agricultural fields. AM fungal inoculation significantly influenced the root microbial community structure in all fields. Inoculation changed the abundance of indigenous AM fungi and other fungal members in a field-dependent manner. Inoculation consistently enriched several bacterial OTUs by changing the abundance of indigenous bacteria and introducing new bacteria. Some inoculum-associated bacteria closely interacted with the introduced AM fungi, some of which belonged to the genera Burkholderia, Cellulomonas, Microbacterium, Sphingomonas, and Streptomyces and may be candidate mycorrhizospheric bacteria that contribute to the establishment and/or function of the introduced AM fungi. Inoculated AM fungi also co-occurred with several indigenous bacteria with putative beneficial traits, suggesting that inoculated AM fungi may recruit specific taxa to confer better plant performance. The bacterial families Methylobacteriaceae, Acetobacteraceae, Armatimonadaceae, and Alicyclobacillaceae were consistently reduced by the inoculation, possibly due to changes in the host plant status caused by the inoculum. To the best of our knowledge, this is the first large-scale study to investigate interactions between AM fungal inoculation and indigenous root microbial communities in agricultural fields.</AbstractText>
</Abstract>
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<ForeName>Turgut Yigit</ForeName>
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<AffiliationInfo><Affiliation>Graduate School of Life Sciences, Tohoku University.</Affiliation>
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<ForeName>Rieko</ForeName>
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<AffiliationInfo><Affiliation>Central Region Agricultural Research Center, National Agriculture and Food Research Organization (NARO).</Affiliation>
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<ForeName>Hideki</ForeName>
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<AffiliationInfo><Affiliation>Kazusa DNA Research Institute.</Affiliation>
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<AffiliationInfo><Affiliation>Department of Innovation Research, Japan Science and Technology Agency.</Affiliation>
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</PubMedPubDate>
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<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">30584188</ArticleId>
<ArticleId IdType="doi">10.1264/jsme2.ME18109</ArticleId>
<ArticleId IdType="pmc">PMC6440726</ArticleId>
</ArticleIdList>
<ReferenceList><Reference><Citation>Mycorrhiza. 2004 Jul;14(3):185-92</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15197635</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Exp Bot. 2005 Jul;56(417):1761-78</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15911555</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2005 Oct;168(1):205-16</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16159334</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Environ Microbiol. 2005 Nov;71(11):6673-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16269696</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Environ Microbiol. 2006 Jan;8(1):1-10</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16343316</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Environ Microbiol. 2006 May;72(5):3550-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16672502</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2006 Jul 1;22(13):1658-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16731699</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Environ Microbiol. 2006 Jul;72(7):5069-72</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16820507</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Microb Ecol. 2008 Jan;55(1):130-40</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17574542</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2007;176(1):22-36</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17803639</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Annu Rev Microbiol. 2009;63:363-83</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19514845</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>FEMS Microbiol Ecol. 2002 Jun 1;40(3):223-31</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19709230</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>FEMS Microbiol Ecol. 2002 Aug 1;41(2):133-40</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19709247</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>FEMS Microbiol Ecol. 2004 Apr 1;48(1):1-13</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19712426</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Ecology. 2009 Dec;90(12):3566-74</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20120823</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>ISME J. 2010 Jun;4(6):752-63</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20147983</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Microbiol Biotechnol. 2011 Feb;89(4):917-30</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21104242</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Sci Total Environ. 2011 Feb 15;409(6):1009-16</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21211826</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2011 Mar 15;27(6):863-4</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21278185</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Physiol. 2011 Jul;156(3):1050-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21467213</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Trends Plant Sci. 2012 Aug;17(8):478-86</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22564542</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>World J Microbiol Biotechnol. 2012 Apr;28(4):1327-50</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22805914</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>FEMS Microbiol Ecol. 2012 Nov;82(2):510-22</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22861658</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2012 Nov 15;28(22):2870-4</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23044551</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS One. 2013 Apr 22;8(4):e61217</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23630581</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nat Methods. 2013 Oct;10(10):996-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23955772</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nat Biotechnol. 2013 Sep;31(9):814-21</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23975157</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Front Microbiol. 2013 Sep 05;4:268</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24046766</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS One. 2013 Oct 16;8(10):e76382</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24146861</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>ISME J. 2014 Apr;8(4):790-803</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24196324</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2014 Jan;42(Database issue):D633-42</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24288368</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mycorrhiza. 2001 Dec;11(6):297-302</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24549350</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>ISME J. 2015 May;9(5):1053-61</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25350159</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Biol. 2014;15(12):550</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25516281</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 2015 Feb 24;112(8):E911-20</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25605935</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Springerplus. 2013 Oct 31;2:587</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25674415</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Basic Microbiol. 2015 Aug;55(8):931-49</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25736602</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Microbiol Res. 2016 Feb;183:68-79</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26805620</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Front Microbiol. 2016 Jan 19;6:1559</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26834714</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS One. 2016 Jun 02;11(6):e0154438</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27253975</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>World J Microbiol Biotechnol. 2016 Jul;32(7):120</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27263015</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS One. 2016 Aug 01;11(8):e0160356</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27479250</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Microorganisms. 2015 Apr 02;3(2):137-51</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27682083</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Sci Total Environ. 2017 Apr 15;584-585:838-848</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28131451</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Microbes Environ. 2017 Mar 31;32(1):24-31</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28260703</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Microbes Environ. 2017 Jun 24;32(2):133-141</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28515390</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Sci Rep. 2017 Jul 5;7(1):4686</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28680077</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mycorrhiza. 2017 Nov;27(8):801-810</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28812152</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Microbiome. 2018 Jan 16;6(1):14</Citation>
<ArticleIdList><ArticleId IdType="pubmed">29338764</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Microbes Environ. 2018;33(1):1-3</Citation>
<ArticleIdList><ArticleId IdType="pubmed">29593170</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Sci Rep. 2018 May 9;8(1):7419</Citation>
<ArticleIdList><ArticleId IdType="pubmed">29743529</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
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Impact of Introduction of Arbuscular Mycorrhizal Fungi on the Root Microbial Community in Agricultural Fields.

Impact of Introduction of Arbuscular Mycorrhizal Fungi on the Root Microbial Community in Agricultural Fields.

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