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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Data on genetic polymorphism of flax (<italic>Linum usitatissimum</italic> L.) pathogenic fungi of <italic>Fusarium, Colletotrichum, Aureobasidium, Septoria</italic>, and <italic>Melampsora</italic> genera</title><author><name sortKey="Novakovskiy, Roman O" sort="Novakovskiy, Roman O" uniqKey="Novakovskiy R" first="Roman O." last="Novakovskiy">Roman O. Novakovskiy</name><affiliation><nlm:aff id="aff0001">Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia</nlm:aff></affiliation></author><author><name sortKey="Dvorianinova, Ekaterina M" sort="Dvorianinova, Ekaterina M" uniqKey="Dvorianinova E" first="Ekaterina M." last="Dvorianinova">Ekaterina M. Dvorianinova</name><affiliation><nlm:aff id="aff0001">Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia</nlm:aff></affiliation><affiliation><nlm:aff id="aff0002">Moscow Institute of Physics and Technology, Dolgoprudny 141701, Russia</nlm:aff></affiliation></author><author><name sortKey="Rozhmina, Tatiana A" sort="Rozhmina, Tatiana A" uniqKey="Rozhmina T" first="Tatiana A." last="Rozhmina">Tatiana A. Rozhmina</name><affiliation><nlm:aff id="aff0001">Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia</nlm:aff></affiliation><affiliation><nlm:aff id="aff0003">Federal Research Center for Bast Fiber Crops, Torzhok 172002, Russia</nlm:aff></affiliation></author><author><name sortKey="Kudryavtseva, Ludmila P" sort="Kudryavtseva, Ludmila P" uniqKey="Kudryavtseva L" first="Ludmila P." last="Kudryavtseva">Ludmila P. Kudryavtseva</name><affiliation><nlm:aff id="aff0003">Federal Research Center for Bast Fiber Crops, Torzhok 172002, Russia</nlm:aff></affiliation></author><author><name sortKey="Gryzunov, Aleksey A" sort="Gryzunov, Aleksey A" uniqKey="Gryzunov A" first="Aleksey A." last="Gryzunov">Aleksey A. Gryzunov</name><affiliation><nlm:aff id="aff0004">All-Russian Scientific Research Institute of Refrigeration Industry – branch of V.M. Gorbatov Federal Research Center for Food Systems of Russian Academy of Sciences, Moscow 127422, Russia</nlm:aff></affiliation></author><author><name sortKey="Pushkova, Elena N" sort="Pushkova, Elena N" uniqKey="Pushkova E" first="Elena N." last="Pushkova">Elena N. Pushkova</name><affiliation><nlm:aff id="aff0001">Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia</nlm:aff></affiliation></author><author><name sortKey="Povkhova, Liubov V" sort="Povkhova, Liubov V" uniqKey="Povkhova L" first="Liubov V." last="Povkhova">Liubov V. Povkhova</name><affiliation><nlm:aff id="aff0001">Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia</nlm:aff></affiliation><affiliation><nlm:aff id="aff0002">Moscow Institute of Physics and Technology, Dolgoprudny 141701, Russia</nlm:aff></affiliation></author><author><name sortKey="Snezhkina, Anastasiya V" sort="Snezhkina, Anastasiya V" uniqKey="Snezhkina A" first="Anastasiya V." last="Snezhkina">Anastasiya V. Snezhkina</name><affiliation><nlm:aff id="aff0001">Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia</nlm:aff></affiliation></author><author><name sortKey="Krasnov, George S" sort="Krasnov, George S" uniqKey="Krasnov G" first="George S." last="Krasnov">George S. Krasnov</name><affiliation><nlm:aff id="aff0001">Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia</nlm:aff></affiliation></author><author><name sortKey="Kudryavtseva, Anna V" sort="Kudryavtseva, Anna V" uniqKey="Kudryavtseva A" first="Anna V." last="Kudryavtseva">Anna V. Kudryavtseva</name><affiliation><nlm:aff id="aff0001">Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia</nlm:aff></affiliation></author><author><name sortKey="Melnikova, Nataliya V" sort="Melnikova, Nataliya V" uniqKey="Melnikova N" first="Nataliya V." last="Melnikova">Nataliya V. Melnikova</name><affiliation><nlm:aff id="aff0001">Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia</nlm:aff></affiliation></author><author><name sortKey="Dmitriev, Alexey A" sort="Dmitriev, Alexey A" uniqKey="Dmitriev A" first="Alexey A." last="Dmitriev">Alexey A. Dmitriev</name><affiliation><nlm:aff id="aff0001">Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia</nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">32490079</idno><idno type="pmc">7256288</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7256288</idno><idno type="RBID">PMC:7256288</idno><idno type="doi">10.1016/j.dib.2020.105710</idno><date when="2020">2020</date><idno type="wicri:Area/Pmc/Corpus">000352</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000352</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Data on genetic polymorphism of flax (<italic>Linum usitatissimum</italic> L.) pathogenic fungi of <italic>Fusarium, Colletotrichum, Aureobasidium, Septoria</italic>, and <italic>Melampsora</italic> genera</title><author><name sortKey="Novakovskiy, Roman O" sort="Novakovskiy, Roman O" uniqKey="Novakovskiy R" first="Roman O." last="Novakovskiy">Roman O. Novakovskiy</name><affiliation><nlm:aff id="aff0001">Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia</nlm:aff></affiliation></author><author><name sortKey="Dvorianinova, Ekaterina M" sort="Dvorianinova, Ekaterina M" uniqKey="Dvorianinova E" first="Ekaterina M." last="Dvorianinova">Ekaterina M. Dvorianinova</name><affiliation><nlm:aff id="aff0001">Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia</nlm:aff></affiliation><affiliation><nlm:aff id="aff0002">Moscow Institute of Physics and Technology, Dolgoprudny 141701, Russia</nlm:aff></affiliation></author><author><name sortKey="Rozhmina, Tatiana A" sort="Rozhmina, Tatiana A" uniqKey="Rozhmina T" first="Tatiana A." last="Rozhmina">Tatiana A. Rozhmina</name><affiliation><nlm:aff id="aff0001">Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia</nlm:aff></affiliation><affiliation><nlm:aff id="aff0003">Federal Research Center for Bast Fiber Crops, Torzhok 172002, Russia</nlm:aff></affiliation></author><author><name sortKey="Kudryavtseva, Ludmila P" sort="Kudryavtseva, Ludmila P" uniqKey="Kudryavtseva L" first="Ludmila P." last="Kudryavtseva">Ludmila P. Kudryavtseva</name><affiliation><nlm:aff id="aff0003">Federal Research Center for Bast Fiber Crops, Torzhok 172002, Russia</nlm:aff></affiliation></author><author><name sortKey="Gryzunov, Aleksey A" sort="Gryzunov, Aleksey A" uniqKey="Gryzunov A" first="Aleksey A." last="Gryzunov">Aleksey A. Gryzunov</name><affiliation><nlm:aff id="aff0004">All-Russian Scientific Research Institute of Refrigeration Industry – branch of V.M. Gorbatov Federal Research Center for Food Systems of Russian Academy of Sciences, Moscow 127422, Russia</nlm:aff></affiliation></author><author><name sortKey="Pushkova, Elena N" sort="Pushkova, Elena N" uniqKey="Pushkova E" first="Elena N." last="Pushkova">Elena N. Pushkova</name><affiliation><nlm:aff id="aff0001">Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia</nlm:aff></affiliation></author><author><name sortKey="Povkhova, Liubov V" sort="Povkhova, Liubov V" uniqKey="Povkhova L" first="Liubov V." last="Povkhova">Liubov V. Povkhova</name><affiliation><nlm:aff id="aff0001">Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia</nlm:aff></affiliation><affiliation><nlm:aff id="aff0002">Moscow Institute of Physics and Technology, Dolgoprudny 141701, Russia</nlm:aff></affiliation></author><author><name sortKey="Snezhkina, Anastasiya V" sort="Snezhkina, Anastasiya V" uniqKey="Snezhkina A" first="Anastasiya V." last="Snezhkina">Anastasiya V. Snezhkina</name><affiliation><nlm:aff id="aff0001">Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia</nlm:aff></affiliation></author><author><name sortKey="Krasnov, George S" sort="Krasnov, George S" uniqKey="Krasnov G" first="George S." last="Krasnov">George S. Krasnov</name><affiliation><nlm:aff id="aff0001">Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia</nlm:aff></affiliation></author><author><name sortKey="Kudryavtseva, Anna V" sort="Kudryavtseva, Anna V" uniqKey="Kudryavtseva A" first="Anna V." last="Kudryavtseva">Anna V. Kudryavtseva</name><affiliation><nlm:aff id="aff0001">Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia</nlm:aff></affiliation></author><author><name sortKey="Melnikova, Nataliya V" sort="Melnikova, Nataliya V" uniqKey="Melnikova N" first="Nataliya V." last="Melnikova">Nataliya V. Melnikova</name><affiliation><nlm:aff id="aff0001">Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia</nlm:aff></affiliation></author><author><name sortKey="Dmitriev, Alexey A" sort="Dmitriev, Alexey A" uniqKey="Dmitriev A" first="Alexey A." last="Dmitriev">Alexey A. Dmitriev</name><affiliation><nlm:aff id="aff0001">Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia</nlm:aff></affiliation></author></analytic><series><title level="j">Data in Brief</title><idno type="eISSN">2352-3409</idno><imprint><date when="2020">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Being a valuable agricultural plant, flax (<italic>Linum usitatissimum</italic> L.) is used for oil and fiber production. However, the cultivation of this agriculture faces an urgent problem of flax susceptibility to fungal diseases. The most destructive ones are caused by the representatives of <italic>Fusarium, Colletotrichum, Aureobasidium, Septoria</italic>, and <italic>Melampsora</italic> genera, reducing flax yields significantly. To combat such pathogens effectively, it is of high importance to assess their genetic diversity that can be used to develop molecular markers to distinguish fungal genera and species. Morphological analysis traditionally carried out for fungal identification requires a given amount of time and tends to be difficult. In the present work, we determined the DNA sequences that are frequently used for phylogenetic studies in fungi – internal transcribed spacer (ITS) and beta-tubulin (<italic>tub2</italic>), translation elongation factor 1-alpha (<italic>tef1</italic>), RNA polymerase II largest subunit (<italic>RPB1</italic>), RNA polymerase II second largest subunit (<italic>RPB2</italic>), and minichromosome maintenance protein (<italic>MCM7</italic>) genes – for 203 flax fungal pathogens of <italic>Fusarium oxysporum, F. avenaceum, F. solani, F. sporotrichiella, F. moniliforme, F. culmorum, F. semitectum, F. gibbosum, Colletotrichum lini, Aureobasidium pullulans, Septoria linicola</italic>, and <italic>Melampsora lini</italic> species. The sequencing was performed using the Illumina MiSeq platform with a 300+300 bp kit, and on average, about 2350 reads per sample were obtained that allows accurate identification of the genetic polymorphism. Raw data are stored at the Sequence Read Archive under the accession number PRJNA596387. The obtained data can be used for fungal phylogenetic studies and the development of a PCR-based test system for flax pathogen identification.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Cullis, C A" uniqKey="Cullis C">C.A. Cullis</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nyvall, R F" uniqKey="Nyvall R">R.F. Nyvall</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gruzdevien, E" uniqKey="Gruzdevien E">E. Gruzdevienė</name></author><author><name sortKey="Brazauskien, I" uniqKey="Brazauskien I">I. Brazauskienė</name></author><author><name sortKey="Repe Kien, J" uniqKey="Repe Kien J">J. Repečkienė</name></author><author><name sortKey="Lugauskas, A" uniqKey="Lugauskas A">A. 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Data Brief</journal-id><journal-id journal-id-type="iso-abbrev">Data Brief</journal-id><journal-title-group><journal-title>Data in Brief</journal-title></journal-title-group><issn pub-type="epub">2352-3409</issn><publisher><publisher-name>Elsevier</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">32490079</article-id><article-id pub-id-type="pmc">7256288</article-id><article-id pub-id-type="publisher-id">S2352-3409(20)30604-1</article-id><article-id pub-id-type="doi">10.1016/j.dib.2020.105710</article-id><article-id pub-id-type="publisher-id">105710</article-id><article-categories><subj-group subj-group-type="heading"><subject>Agricultural and Biological Science</subject></subj-group></article-categories><title-group><article-title>Data on genetic polymorphism of flax (<italic>Linum usitatissimum</italic> L.) pathogenic fungi of <italic>Fusarium, Colletotrichum, Aureobasidium, Septoria</italic>, and <italic>Melampsora</italic> genera</article-title></title-group><contrib-group><contrib contrib-type="author" id="au0001"><name><surname>Novakovskiy</surname><given-names>Roman O.</given-names></name><xref rid="aff0001" ref-type="aff">a</xref><xref rid="fn1" ref-type="fn">#</xref></contrib><contrib contrib-type="author" id="au0002"><name><surname>Dvorianinova</surname><given-names>Ekaterina M.</given-names></name><xref rid="aff0001" ref-type="aff">a</xref><xref rid="aff0002" ref-type="aff">b</xref><xref rid="fn1" ref-type="fn">#</xref></contrib><contrib contrib-type="author" id="au0003"><name><surname>Rozhmina</surname><given-names>Tatiana A.</given-names></name><xref rid="aff0001" ref-type="aff">a</xref><xref rid="aff0003" ref-type="aff">c</xref></contrib><contrib contrib-type="author" id="au0004"><name><surname>Kudryavtseva</surname><given-names>Ludmila P.</given-names></name><xref rid="aff0003" ref-type="aff">c</xref></contrib><contrib contrib-type="author" id="au0005"><name><surname>Gryzunov</surname><given-names>Aleksey A.</given-names></name><xref rid="aff0004" ref-type="aff">d</xref></contrib><contrib contrib-type="author" id="au0006"><name><surname>Pushkova</surname><given-names>Elena N.</given-names></name><xref rid="aff0001" ref-type="aff">a</xref></contrib><contrib contrib-type="author" id="au0007"><name><surname>Povkhova</surname><given-names>Liubov V.</given-names></name><xref rid="aff0001" ref-type="aff">a</xref><xref rid="aff0002" ref-type="aff">b</xref></contrib><contrib contrib-type="author" id="au0008"><name><surname>Snezhkina</surname><given-names>Anastasiya V.</given-names></name><xref rid="aff0001" ref-type="aff">a</xref></contrib><contrib contrib-type="author" id="au0009"><name><surname>Krasnov</surname><given-names>George S.</given-names></name><xref rid="aff0001" ref-type="aff">a</xref></contrib><contrib contrib-type="author" id="au0010"><name><surname>Kudryavtseva</surname><given-names>Anna V.</given-names></name><xref rid="aff0001" ref-type="aff">a</xref></contrib><contrib contrib-type="author" id="au0011"><name><surname>Melnikova</surname><given-names>Nataliya V.</given-names></name><email>mnv-4529264@yandex.ru</email><xref rid="aff0001" ref-type="aff">a</xref><xref rid="cor0001" ref-type="corresp">⁎</xref></contrib><contrib contrib-type="author" id="au0012"><name><surname>Dmitriev</surname><given-names>Alexey A.</given-names></name><xref rid="aff0001" ref-type="aff">a</xref></contrib><aff id="aff0001"><label>a</label>Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia</aff><aff id="aff0002"><label>b</label>Moscow Institute of Physics and Technology, Dolgoprudny 141701, Russia</aff><aff id="aff0003"><label>c</label>Federal Research Center for Bast Fiber Crops, Torzhok 172002, Russia</aff><aff id="aff0004"><label>d</label>All-Russian Scientific Research Institute of Refrigeration Industry – branch of V.M. Gorbatov Federal Research Center for Food Systems of Russian Academy of Sciences, Moscow 127422, Russia</aff></contrib-group><author-notes><corresp id="cor0001"><label>⁎</label>Corresponding author. <email>mnv-4529264@yandex.ru</email></corresp><fn id="fn1"><label>#</label><p id="notep0001">These authors contributed equally to this work</p></fn></author-notes><pub-date pub-type="pmc-release"><day>15</day><month>5</month><year>2020</year></pub-date><pmc-comment> PMC Release delay is 0 months and 0 days and was based on .</pmc-comment>
<pub-date pub-type="collection"><month>8</month><year>2020</year></pub-date><pub-date pub-type="epub"><day>15</day><month>5</month><year>2020</year></pub-date><volume>31</volume><elocation-id>105710</elocation-id><history><date date-type="received"><day>3</day><month>3</month><year>2020</year></date><date date-type="rev-recd"><day>28</day><month>4</month><year>2020</year></date><date date-type="accepted"><day>8</day><month>5</month><year>2020</year></date></history><permissions><copyright-statement>© 2020 The Author(s)</copyright-statement><copyright-year>2020</copyright-year><license license-type="CC BY" xlink:href="http://creativecommons.org/licenses/by/4.0/"><license-p>This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).</license-p></license></permissions><abstract id="abs0001"><p>Being a valuable agricultural plant, flax (<italic>Linum usitatissimum</italic> L.) is used for oil and fiber production. However, the cultivation of this agriculture faces an urgent problem of flax susceptibility to fungal diseases. The most destructive ones are caused by the representatives of <italic>Fusarium, Colletotrichum, Aureobasidium, Septoria</italic>, and <italic>Melampsora</italic> genera, reducing flax yields significantly. To combat such pathogens effectively, it is of high importance to assess their genetic diversity that can be used to develop molecular markers to distinguish fungal genera and species. Morphological analysis traditionally carried out for fungal identification requires a given amount of time and tends to be difficult. In the present work, we determined the DNA sequences that are frequently used for phylogenetic studies in fungi – internal transcribed spacer (ITS) and beta-tubulin (<italic>tub2</italic>), translation elongation factor 1-alpha (<italic>tef1</italic>), RNA polymerase II largest subunit (<italic>RPB1</italic>), RNA polymerase II second largest subunit (<italic>RPB2</italic>), and minichromosome maintenance protein (<italic>MCM7</italic>) genes – for 203 flax fungal pathogens of <italic>Fusarium oxysporum, F. avenaceum, F. solani, F. sporotrichiella, F. moniliforme, F. culmorum, F. semitectum, F. gibbosum, Colletotrichum lini, Aureobasidium pullulans, Septoria linicola</italic>, and <italic>Melampsora lini</italic> species. The sequencing was performed using the Illumina MiSeq platform with a 300+300 bp kit, and on average, about 2350 reads per sample were obtained that allows accurate identification of the genetic polymorphism. Raw data are stored at the Sequence Read Archive under the accession number PRJNA596387. The obtained data can be used for fungal phylogenetic studies and the development of a PCR-based test system for flax pathogen identification.</p></abstract><kwd-group id="keys0001"><title>Keywords</title><kwd>Fungi</kwd><kwd>Phytopathogens</kwd><kwd><italic>Fusarium</italic></kwd><kwd>Genetic polymorphism</kwd><kwd>Deep sequencing</kwd><kwd>Amplicon sequencing</kwd><kwd>Flax</kwd><kwd><italic>Linum usitatissimum</italic> L</kwd></kwd-group></article-meta></front><body><p id="para0002">Specifications table<table-wrap position="float" id="utbl0001"><table frame="hsides" rules="groups"><tbody><tr><td valign="top">Subject</td><td valign="top">Genetics</td></tr><tr><td valign="top">Specific subject area</td><td valign="top">Molecular Genetics, Agricultural Mycology</td></tr><tr><td valign="top">Type of data</td><td valign="top">Amplicon sequence data</td></tr><tr><td valign="top">How data were acquired</td><td valign="top">Illumina MiSeq, 300+300 bp paired-end reads</td></tr><tr><td valign="top">Data format</td><td valign="top">Raw sequence reads, fastq format</td></tr><tr><td valign="top">Parameters for data collection</td><td valign="top">DNA was extracted from 203 flax (<italic>Linum usitatissimum</italic> L.) fungal pathogen samples of <italic>Fusarium oxysporum, F. avenaceum, F. solani, F. sporotrichiella, F. moniliforme, F. culmorum, F. semitectum, F. gibbosum, Colletotrichum lini, Aureobasidium pullulans, Septoria linicola</italic>, and <italic>Melampsora lini</italic> species obtained from the phytopathogen collection of the Institute for Flax (Torzhok, Russia)</td></tr><tr><td valign="top">Description of data collection</td><td valign="top">Amplicon libraries of fragments of internal transcribed spacer (ITS) and beta-tubulin (<italic>tub2</italic>), translation elongation factor 1-alpha (<italic>tef1</italic>), RNA polymerase II largest subunit (<italic>RPB1</italic>), RNA polymerase II second largest subunit (<italic>RPB2</italic>), and minichromosome maintenance protein (<italic>MCM7</italic>) genes of flax fungal pathogens of <italic>Fusarium, Colletotrichum, Aureobasidium, Septoria</italic>, and <italic>Melampsora</italic> genera were prepared using two-step PCR and sequenced on Illumina MiSeq with a 600-cycle kit</td></tr><tr><td valign="top">Data source location</td><td valign="top">Institute for Flax, Torzhok, Russia</td></tr><tr><td valign="top">Data accessibility</td><td valign="top">One can access amplicon sequence data at the NCBI Sequence Read Archive (SRA) under the accession number PRJNA596387 (<ext-link ext-link-type="uri" xlink:href="http://https://www.ncbi.nlm.nih.gov/sra/PRJNA596387" id="interref0001">https://www.ncbi.nlm.nih.gov/sra/PRJNA596387</ext-link>)</td></tr></tbody></table></table-wrap></p><sec id="sec0001a"><title>Value of the data</title><p id="para0003"><list list-type="simple" id="celist0001"><list-item id="celistitem0001"><label>•</label><p id="para0004">The dataset could be actively used for the assessment of genetic diversity and phylogenetic investigations of fungi belonging to <italic>Fusarium, Colletotrichum, Aureobasidium, Septoria</italic>, and <italic>Melampsora</italic> genera.</p></list-item><list-item id="celistitem0002"><label>•</label><p id="para0005">The data can support those working in the field of molecular genetics of fungi and those who work with plant fungal pathogens.</p></list-item><list-item id="celistitem0003"><label>•</label><p id="para0006">The kinship and evolution of fungi of <italic>Fusarium, Colletotrichum, Aureobasidium, Septoria</italic>, and <italic>Melampsora</italic> genera could be estimated using the provided dataset.</p></list-item><list-item id="celistitem0004"><label>•</label><p id="para0007">The generated data open up an opportunity to create a test system for the identification of flax pathogens basing on the information on genetic polymorphism.</p></list-item></list></p></sec><sec id="sec0001"><label>1</label><title>Data Description</title><p id="para0008">Being a source of oil and fiber <xref rid="bib0001" ref-type="bibr">[1]</xref>, flax is affected by numerous fungal pathogens. The most serious diseases of this plant are caused by the representatives of such species as <italic>Fusarium oxysporum</italic> f. sp. <italic>lini, F. avenaceum, F. culmorum, Melampsora lini, Colletotrichum lini, Septoria linicola</italic>, and <italic>Aureobasidium pullulans</italic><xref rid="bib0002" ref-type="bibr">[2</xref>,<xref rid="bib0003" ref-type="bibr">3]</xref>. Information on the genetic diversity of the listed species is lacking but is of high importance for the determination of their kinship and evolution, as well as for the development of effective ways to combat these flax pathogens.</p><p id="para0009">For 203 samples of flax pathogens of <italic>Fusarium, Colletotrichum, Aureobasidium, Septoria</italic>, and <italic>Melampsora</italic> genera, we sequenced the fragments of the regions that are frequently used for phylogenetic studies in fungi: internal transcribed spacer (ITS) <xref rid="bib0004" ref-type="bibr">[4</xref>,<xref rid="bib0005" ref-type="bibr">5]</xref>, beta-tubulin (<italic>tub2</italic>), translation elongation factor 1-alpha (<italic>tef1</italic>), RNA polymerase II largest subunit (<italic>RPB1</italic>), RNA polymerase II second largest subunit (<italic>RPB2</italic>), and minichromosome maintenance protein (<italic>MCM7</italic>) <xref rid="bib0006" ref-type="bibr">[6]</xref>, <xref rid="bib0007" ref-type="bibr">[7]</xref>, <xref rid="bib0008" ref-type="bibr">[8]</xref>. Amplicon libraries were prepared using two-stage PCR (primers for the first stage of PCR are listed in Supplementary Table S1) and deep sequenced on the Illumina MiSeq platform. On average, 2350 (range – 400-6000) paired-end reads (300+300 bp) per sample were obtained in the fastq format and deposited to the Sequence Read Archive (SRA) under the accession number PRJNA596387. These data play a key role in assessing the genetic diversity of flax fungal pathogens and the development of time-saving and accurate test systems for their identification. Basing on the given dataset, future experiments are likely to give further insight into the question of the kinship and evolution of fungi of the studied genera.</p></sec><sec id="sec0002"><label>2</label><title>Experimental Design, Materials, and Methods</title><sec id="sec0003"><label>2.1</label><title>Material</title><p id="para0010">203 samples of 12 fungal species were provided by the Institute for Flax (Torzhok, Russia) from their phytopathogen collection in 2018. Among them were <italic>Fusarium oxysporum</italic> (72 samples), <italic>F. avenaceum</italic> (23), <italic>F. solani</italic> (5), <italic>F. sporotrichiella</italic> (3), <italic>F. moniliforme</italic> (8), <italic>F. culmorum</italic> (5), <italic>F. semitectum</italic> (2), <italic>F. gibbosum</italic> (4), <italic>Colletotrichum lini</italic> (46), <italic>Aureobasidium pullulans</italic> (17), <italic>Septoria linicola</italic> (8), and <italic>Melampsora lini</italic> (10) species.</p></sec><sec id="sec0004"><label>2.2</label><title>DNA extraction and quality control</title><p id="para0011">DNA was extracted from fungal mycelium according to the standard CTAB protocol. Agarose gel electrophoresis (2% agarose) and the Qubit 2.0 fluorometer (Thermo Fisher Scientific, USA) were used to control DNA quality and evaluate DNA quantity.</p></sec><sec id="sec0005"><label>2.3</label><title>DNA library preparation and sequencing</title><p id="para0012">We amplified DNA fragments of 203 samples of fungi comprising ITS and <italic>tub2, tef1, RPB1, RPB2</italic>, and <italic>MCM7</italic> genes. Amplicon libraries were prepared according to the protocol <xref rid="bib0009" ref-type="bibr">[9]</xref> with two-stage PCR as we described earlier <xref rid="bib0010" ref-type="bibr">[10]</xref>. Amplification of target sequences using primers that comprised target-specific sequences <xref rid="bib0008" ref-type="bibr">[8</xref>,<xref rid="bib0011" ref-type="bibr">11]</xref> and overhang adapters was performed in the first step (Supplementary Table S1). For each sample, amplicons were then equimolarly pooled and the second PCR was performed with primers consisted of dual-index barcodes and sequencing adapters. Next, all PCR-products were equimolarly pooled and the quality of the library was evaluated by the 2100 Bioanalyzer (Agilent Technologies, USA), while the quantity – by the Qubit 2.0 fluorometer (Thermo Fisher Scientific). 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of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi)</article-title><source>Mol Phylogenet E</source><volume>43</volume><year>2007</year><fpage>430</fpage><lpage>451</lpage><pub-id pub-id-type="doi">10.1016/j.ympev.2006.08.024</pub-id></element-citation></ref></ref-list><sec id="sec0007" sec-type="supplementary-material"><label>Appendix</label><title>Supplementary materials</title><p id="para0013a"><supplementary-material content-type="local-data" id="ecom0001"><caption><p>Appendix A. Supplementary data</p></caption><media xlink:href="mmc1.docx"><alt-text>Image, application 1</alt-text></media></supplementary-material><supplementary-material content-type="local-data" id="ecom0002"><media xlink:href="mmc2.xml"><alt-text>Image, application 2</alt-text></media></supplementary-material></p></sec><ack id="ack0001"><title>Acknowledgments</title><p>Part of this work (Sequencing of <italic>Fusarium oxysporum</italic> strains) was financially supported by the Russian Science Foundation [grant number 16-16-00114]. Part of this work (Sequencing of the strains of <italic>Fusarium, Colletotrichum, Aureobasidium, Septoria</italic>, and <italic>Melampsora</italic> genera) was financially supported by the Russian President Grant [grant number МК-5828.2018.4]. The maintenance of flax pathogen collection is carried out under the financial support of the Ministry of Science and Higher Education of the Russian Federation [state assignment number 075-00853-19-00]. We thank the Center for Precision Genome Editing and Genetic Technologies for Biomedicine, EIMB RAS for providing the techniques for targeted deep sequencing. The sequencing was performed using the equipment of EIMB RAS “Genome” center (<ext-link ext-link-type="uri" xlink:href="http://http://www.eimb.ru/ru1/ckp/ccu_genome_ce.php" id="interref0002">http://www.eimb.ru/ru1/ckp/ccu_genome_ce.php</ext-link>).</p><sec id="sec0005a"><title>Conflict of Interest</title><p id="para0016">The authors declare that they have no known competing financial interests or personal relationships which have, or could be perceived to have, influenced the work reported in this article.</p></sec></ack><fn-group><fn id="sec0006" fn-type="supplementary-material"><p id="para0002a">Supplementary material associated with this article can be found, in the online version, at doi:<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.1016/j.dib.2020.105710" id="interref0003">10.1016/j.dib.2020.105710</ext-link>.</p></fn></fn-group></back></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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