Comparative Transcriptome Analysis of Resistant and Susceptible Tomato Lines in Response to Infection by Xanthomonas perforans Race T3
Identifieur interne : 000653 ( Ncbi/Merge ); précédent : 000652; suivant : 000654Comparative Transcriptome Analysis of Resistant and Susceptible Tomato Lines in Response to Infection by Xanthomonas perforans Race T3
Auteurs : Heshan Du ; Yuqing Wang ; Jingjing Yang ; Wencai YangSource :
- Frontiers in Plant Science [ 1664-462X ] ; 2015.
Abstract
Bacterial spot, incited by several
Url:
DOI: 10.3389/fpls.2015.01173
PubMed: 26734053
PubMed Central: 4689867
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Comparative Transcriptome Analysis of Resistant and Susceptible Tomato Lines in Response to Infection by <italic>Xanthomonas perforans</italic> Race T3</title><author><name sortKey="Du, Heshan" sort="Du, Heshan" uniqKey="Du H" first="Heshan" last="Du">Heshan Du</name></author><author><name sortKey="Wang, Yuqing" sort="Wang, Yuqing" uniqKey="Wang Y" first="Yuqing" last="Wang">Yuqing Wang</name></author><author><name sortKey="Yang, Jingjing" sort="Yang, Jingjing" uniqKey="Yang J" first="Jingjing" last="Yang">Jingjing Yang</name></author><author><name sortKey="Yang, Wencai" sort="Yang, Wencai" uniqKey="Yang W" first="Wencai" last="Yang">Wencai Yang</name></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26734053</idno><idno type="pmc">4689867</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4689867</idno><idno type="RBID">PMC:4689867</idno><idno type="doi">10.3389/fpls.2015.01173</idno><date when="2015">2015</date><idno type="wicri:Area/Pmc/Corpus">000019</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000019</idno><idno type="wicri:Area/Pmc/Curation">000019</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000019</idno><idno type="wicri:Area/Pmc/Checkpoint">000725</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000725</idno><idno type="wicri:Area/Ncbi/Merge">000653</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Comparative Transcriptome Analysis of Resistant and Susceptible Tomato Lines in Response to Infection by <italic>Xanthomonas perforans</italic> Race T3</title><author><name sortKey="Du, Heshan" sort="Du, Heshan" uniqKey="Du H" first="Heshan" last="Du">Heshan Du</name></author><author><name sortKey="Wang, Yuqing" sort="Wang, Yuqing" uniqKey="Wang Y" first="Yuqing" last="Wang">Yuqing Wang</name></author><author><name sortKey="Yang, Jingjing" sort="Yang, Jingjing" uniqKey="Yang J" first="Jingjing" last="Yang">Jingjing Yang</name></author><author><name sortKey="Yang, Wencai" sort="Yang, Wencai" uniqKey="Yang W" first="Wencai" last="Yang">Wencai Yang</name></author></analytic><series><title level="j">Frontiers in Plant Science</title><idno type="eISSN">1664-462X</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Bacterial spot, incited by several <italic>Xanthomonas</italic> sp., is a serious disease in tomato (<italic>Solanum lycopersicum</italic> L.). Although genetics of resistance has been widely investigated, the interactions between the pathogen and tomato plants remain unclear. In this study, tanscriptomes of <italic>X. perforans</italic> race T3 infected tomato lines were compared to those of controls. An average of 7 million reads were generated with approximately 21,526 genes mapped in each sample post-inoculation at 6 h (6 HPI) and 6 days (6 DPI) using RNA-sequencing technology. Overall, the numbers of differentially expressed genes (DEGs) were higher in the resistant tomato line PI 114490 than in the susceptible line OH 88119, and the numbers of DEGs were higher at 6 DPI than at 6 HPI. Fewer genes (78 in PI 114490 and 15 in OH 88119) were up-regulated and most DEGs were down-regulated, suggesting that the inducible defense response might not be fully activated at 6 HPI. Accumulation expression levels of 326 co-up regulated genes in both tomato lines at 6 DPI might be involved in basal defense, while the specific and strongly induced genes at 6 DPI might be correlated with the resistance in PI 114490. Most DEGs were involved in plant hormone signal transduction, plant-pathogen interaction and phenylalanine metabolism, and the genes significantly up-regulated in PI 114490 at 6 DPI were associated with defense response pathways. DEGs containing NBS-LRR domain or defense-related WRKY transcription factors were also identified. The results will provide a valuable resource for understanding the interactions between <italic>X. perforans</italic> and tomato plants.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Asai, T" uniqKey="Asai T">T. Asai</name></author><author><name sortKey="Tena, G" uniqKey="Tena G">G. Tena</name></author><author><name sortKey="Plotnikova, J" uniqKey="Plotnikova J">J. 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Front Plant Sci</journal-id><journal-id journal-id-type="iso-abbrev">Front Plant Sci</journal-id><journal-id journal-id-type="publisher-id">Front. Plant Sci.</journal-id><journal-title-group><journal-title>Frontiers in Plant Science</journal-title></journal-title-group><issn pub-type="epub">1664-462X</issn><publisher><publisher-name>Frontiers Media S.A.</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">26734053</article-id><article-id pub-id-type="pmc">4689867</article-id><article-id pub-id-type="doi">10.3389/fpls.2015.01173</article-id><article-categories><subj-group subj-group-type="heading"><subject>Plant Science</subject><subj-group><subject>Original Research</subject></subj-group></subj-group></article-categories><title-group><article-title>Comparative Transcriptome Analysis of Resistant and Susceptible Tomato Lines in Response to Infection by <italic>Xanthomonas perforans</italic> Race T3</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Du</surname><given-names>Heshan</given-names></name><uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/288915/overview"></uri></contrib><contrib contrib-type="author"><name><surname>Wang</surname><given-names>Yuqing</given-names></name><xref ref-type="author-notes" rid="fn001"><sup>*</sup></xref><uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/300016/overview"></uri></contrib><contrib contrib-type="author"><name><surname>Yang</surname><given-names>Jingjing</given-names></name><uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/302980/overview"></uri></contrib><contrib contrib-type="author"><name><surname>Yang</surname><given-names>Wencai</given-names></name><xref ref-type="author-notes" rid="fn002"><sup>*</sup></xref><uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/266801/overview"></uri></contrib></contrib-group><aff><institution>Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, China Agricultural University</institution><country>Beijing, China</country></aff><author-notes><fn fn-type="edited-by"><p>Edited by: Vasileios Fotopoulos, Cyprus University of Technology, Cyprus</p></fn><fn fn-type="edited-by"><p>Reviewed by: Jaime Auger, Universidad de Chile, Chile; Hao Peng, Washington State University, USA</p></fn><corresp id="fn001">*Correspondence: Yuqing Wang <email xlink:type="simple">wyq@cau.edu.cn</email>;</corresp><corresp id="fn002">Wencai Yang <email xlink:type="simple">yangwencai@cau.edu.cn</email></corresp><fn fn-type="other" id="fn003"><p>This article was submitted to Crop Science and Horticulture, a section of the journal Frontiers in Plant Science</p></fn></author-notes><pub-date pub-type="epub"><day>24</day><month>12</month><year>2015</year></pub-date><pub-date pub-type="collection"><year>2015</year></pub-date><volume>6</volume><elocation-id>1173</elocation-id><history><date date-type="received"><day>21</day><month>8</month><year>2015</year></date><date date-type="accepted"><day>07</day><month>12</month><year>2015</year></date></history><permissions><copyright-statement>Copyright © 2015 Du, Wang, Yang and Yang.</copyright-statement><copyright-year>2015</copyright-year><copyright-holder>Du, Wang, Yang and Yang</copyright-holder><license xlink:href="http://creativecommons.org/licenses/by/4.0/"><license-p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</license-p></license></permissions><abstract><p>Bacterial spot, incited by several <italic>Xanthomonas</italic> sp., is a serious disease in tomato (<italic>Solanum lycopersicum</italic> L.). Although genetics of resistance has been widely investigated, the interactions between the pathogen and tomato plants remain unclear. In this study, tanscriptomes of <italic>X. perforans</italic> race T3 infected tomato lines were compared to those of controls. An average of 7 million reads were generated with approximately 21,526 genes mapped in each sample post-inoculation at 6 h (6 HPI) and 6 days (6 DPI) using RNA-sequencing technology. Overall, the numbers of differentially expressed genes (DEGs) were higher in the resistant tomato line PI 114490 than in the susceptible line OH 88119, and the numbers of DEGs were higher at 6 DPI than at 6 HPI. Fewer genes (78 in PI 114490 and 15 in OH 88119) were up-regulated and most DEGs were down-regulated, suggesting that the inducible defense response might not be fully activated at 6 HPI. Accumulation expression levels of 326 co-up regulated genes in both tomato lines at 6 DPI might be involved in basal defense, while the specific and strongly induced genes at 6 DPI might be correlated with the resistance in PI 114490. Most DEGs were involved in plant hormone signal transduction, plant-pathogen interaction and phenylalanine metabolism, and the genes significantly up-regulated in PI 114490 at 6 DPI were associated with defense response pathways. DEGs containing NBS-LRR domain or defense-related WRKY transcription factors were also identified. The results will provide a valuable resource for understanding the interactions between <italic>X. perforans</italic> and tomato plants.</p></abstract><kwd-group><kwd><italic>Solanum lycopersicum</italic></kwd><kwd><italic>Xanthomonas perforans</italic></kwd><kwd>compatible and incompatible interactions</kwd><kwd>transcriptome analysis</kwd><kwd>RNA sequencing</kwd></kwd-group><funding-group><award-group><funding-source id="cn001">National Natural Science Foundation of China<named-content content-type="fundref-id">10.13039/501100001809</named-content></funding-source><award-id rid="cn001">31372073</award-id></award-group></funding-group><counts><fig-count count="6"></fig-count><table-count count="5"></table-count><equation-count count="0"></equation-count><ref-count count="51"></ref-count><page-count count="14"></page-count><word-count count="9660"></word-count></counts></article-meta></front></pmc><affiliations><list></list><tree><noCountry><name sortKey="Du, Heshan" sort="Du, Heshan" uniqKey="Du H" first="Heshan" last="Du">Heshan Du</name><name sortKey="Wang, Yuqing" sort="Wang, Yuqing" uniqKey="Wang Y" first="Yuqing" last="Wang">Yuqing Wang</name><name sortKey="Yang, Jingjing" sort="Yang, Jingjing" uniqKey="Yang J" first="Jingjing" last="Yang">Jingjing Yang</name><name sortKey="Yang, Wencai" sort="Yang, Wencai" uniqKey="Yang W" first="Wencai" last="Yang">Wencai Yang</name></noCountry></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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