Inferring phylogeny and speciation of Gymnosporangium species, and their coevolution with host plants
Identifieur interne : 000630 ( Main/Exploration ); précédent : 000629; suivant : 000631Inferring phylogeny and speciation of Gymnosporangium species, and their coevolution with host plants
Auteurs : Peng Zhao [République populaire de Chine] ; Fang Liu [République populaire de Chine] ; Ying-Ming Li [République populaire de Chine] ; Lei Cai [République populaire de Chine]Source :
- Scientific Reports [ 2045-2322 ] ; 2016.
Abstract
Url:
DOI: 10.1038/srep29339
PubMed: 27385413
PubMed Central: 4935989
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Inferring phylogeny and speciation of <italic>Gymnosporangium</italic> species, and their coevolution with host plants</title><author><name sortKey="Zhao, Peng" sort="Zhao, Peng" uniqKey="Zhao P" first="Peng" last="Zhao">Peng Zhao</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences</institution>, Beijing 100101,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Liu, Fang" sort="Liu, Fang" uniqKey="Liu F" first="Fang" last="Liu">Fang Liu</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences</institution>, Beijing 100101,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Li, Ying Ming" sort="Li, Ying Ming" uniqKey="Li Y" first="Ying-Ming" last="Li">Ying-Ming Li</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences</institution>, Beijing 100101,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Cai, Lei" sort="Cai, Lei" uniqKey="Cai L" first="Lei" last="Cai">Lei Cai</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences</institution>, Beijing 100101,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27385413</idno><idno type="pmc">4935989</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4935989</idno><idno type="RBID">PMC:4935989</idno><idno type="doi">10.1038/srep29339</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000091</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000091</idno><idno type="wicri:Area/Pmc/Curation">000091</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000091</idno><idno type="wicri:Area/Pmc/Checkpoint">000591</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000591</idno><idno type="wicri:Area/Ncbi/Merge">000720</idno><idno type="wicri:Area/Ncbi/Curation">000720</idno><idno type="wicri:Area/Ncbi/Checkpoint">000720</idno><idno type="wicri:Area/Main/Merge">000630</idno><idno type="wicri:Area/Main/Curation">000630</idno><idno type="wicri:Area/Main/Exploration">000630</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Inferring phylogeny and speciation of <italic>Gymnosporangium</italic> species, and their coevolution with host plants</title><author><name sortKey="Zhao, Peng" sort="Zhao, Peng" uniqKey="Zhao P" first="Peng" last="Zhao">Peng Zhao</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences</institution>, Beijing 100101,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Liu, Fang" sort="Liu, Fang" uniqKey="Liu F" first="Fang" last="Liu">Fang Liu</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences</institution>, Beijing 100101,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Li, Ying Ming" sort="Li, Ying Ming" uniqKey="Li Y" first="Ying-Ming" last="Li">Ying-Ming Li</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences</institution>, Beijing 100101,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Cai, Lei" sort="Cai, Lei" uniqKey="Cai L" first="Lei" last="Cai">Lei Cai</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences</institution>, Beijing 100101,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></analytic><series><title level="j">Scientific Reports</title><idno type="eISSN">2045-2322</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><italic>Gymnosporangium</italic> species (Pucciniaceae, Pucciniales) cause serious diseases and significant economic losses to apple cultivars. Most of the reported species are heteroecious and complete their life cycles on two different plant hosts belonging to two unrelated genera, i.e. <italic>Juniperus</italic> and <italic>Malus</italic>. However, the phylogenetic relationships among <italic>Gymnosporangium</italic> species and the evolutionary history of <italic>Gymnosporangium</italic> on its aecial and telial hosts were still undetermined. In this study, we recognized species based on rDNA sequence data by using coalescent method of generalized mixed Yule-coalescent (GMYC) and Poisson Tree Processes (PTP) models. The evolutionary relationships of <italic>Gymnosporangium</italic> species and their hosts were investigated by comparing the cophylogenetic analyses of <italic>Gymnosporangium</italic> species with <italic>Malus</italic> species and <italic>Juniperus</italic> species, respectively. The concordant results of GMYC and PTP analyses recognized 14 species including 12 known species and two undescribed species. In addition, host alternations of 10 <italic>Gymnosporangium</italic> species were uncovered by linking the derived sequences between their aecial and telial stages. This study revealed the evolutionary process of <italic>Gymnosporangium</italic> species, and clarified that the aecial hosts played more important roles than telial hosts in the speciation of <italic>Gymnosporangium</italic> species. Host switch, losses, duplication and failure to divergence all contributed to the speciation of <italic>Gymnosporangium</italic> species.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Robinson, J P" uniqKey="Robinson J">J. P. Robinson</name></author><author><name sortKey="Harris, S A" uniqKey="Harris S">S. A. Harris</name></author><author><name sortKey="Juniper, B E" uniqKey="Juniper B">B. E. Juniper</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Li, B H" uniqKey="Li B">B. H. 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