A preliminary DNA barcode selection for the genus Russula (Russulales, Basidiomycota)
Identifieur interne : 000420 ( Main/Exploration ); précédent : 000419; suivant : 000421A preliminary DNA barcode selection for the genus Russula (Russulales, Basidiomycota)
Auteurs : Guo-Jie Li [République populaire de Chine] ; Rui-Lin Zhao [République populaire de Chine] ; Chu-Long Zhang [République populaire de Chine] ; Fu-Cheng Lin [République populaire de Chine]Source :
- Mycology [ 2150-1203 ] ; 2018.
Abstract
Url:
DOI: 10.1080/21501203.2018.1500400
PubMed: 31069120
PubMed Central: 6493256
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">A preliminary DNA barcode selection for the genus <italic>Russula</italic> (Russulales, Basidiomycota)</title><author><name sortKey="Li, Guo Jie" sort="Li, Guo Jie" uniqKey="Li G" first="Guo-Jie" last="Li">Guo-Jie Li</name><affiliation wicri:level="1"><nlm:aff id="AFF0001"><institution>State Key Laboratory for Rice Biology, Institute of Biotechnology, Zhejiang University</institution>, Hangzhou,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="AFF0002"><institution>State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences</institution>, Chaoyang District, Beijing,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Zhao, Rui Lin" sort="Zhao, Rui Lin" uniqKey="Zhao R" first="Rui-Lin" last="Zhao">Rui-Lin Zhao</name><affiliation wicri:level="1"><nlm:aff id="AFF0002"><institution>State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences</institution>, Chaoyang District, Beijing,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="AFF0003"><institution>College of Life Sciences, University of Chinese Academy of Sciences</institution>, Huairou District, Beijing,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Chu Long" sort="Zhang, Chu Long" uniqKey="Zhang C" first="Chu-Long" last="Zhang">Chu-Long Zhang</name><affiliation wicri:level="1"><nlm:aff id="AFF0001"><institution>State Key Laboratory for Rice Biology, Institute of Biotechnology, Zhejiang University</institution>, Hangzhou,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Lin, Fu Cheng" sort="Lin, Fu Cheng" uniqKey="Lin F" first="Fu-Cheng" last="Lin">Fu-Cheng Lin</name><affiliation wicri:level="1"><nlm:aff id="AFF0001"><institution>State Key Laboratory for Rice Biology, Institute of Biotechnology, Zhejiang University</institution>, Hangzhou,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">31069120</idno><idno type="pmc">6493256</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6493256</idno><idno type="RBID">PMC:6493256</idno><idno type="doi">10.1080/21501203.2018.1500400</idno><date when="2018">2018</date><idno type="wicri:Area/Pmc/Corpus">000959</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000959</idno><idno type="wicri:Area/Pmc/Curation">000959</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000959</idno><idno type="wicri:Area/Pmc/Checkpoint">000401</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000401</idno><idno type="wicri:Area/Ncbi/Merge">000A39</idno><idno type="wicri:Area/Ncbi/Curation">000A39</idno><idno type="wicri:Area/Ncbi/Checkpoint">000A39</idno><idno type="wicri:doubleKey">2150-1203:2018:Li G:a:preliminary:dna</idno><idno type="wicri:Area/Main/Merge">000420</idno><idno type="wicri:Area/Main/Curation">000420</idno><idno type="wicri:Area/Main/Exploration">000420</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">A preliminary DNA barcode selection for the genus <italic>Russula</italic> (Russulales, Basidiomycota)</title><author><name sortKey="Li, Guo Jie" sort="Li, Guo Jie" uniqKey="Li G" first="Guo-Jie" last="Li">Guo-Jie Li</name><affiliation wicri:level="1"><nlm:aff id="AFF0001"><institution>State Key Laboratory for Rice Biology, Institute of Biotechnology, Zhejiang University</institution>, Hangzhou,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="AFF0002"><institution>State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences</institution>, Chaoyang District, Beijing,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Zhao, Rui Lin" sort="Zhao, Rui Lin" uniqKey="Zhao R" first="Rui-Lin" last="Zhao">Rui-Lin Zhao</name><affiliation wicri:level="1"><nlm:aff id="AFF0002"><institution>State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences</institution>, Chaoyang District, Beijing,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="AFF0003"><institution>College of Life Sciences, University of Chinese Academy of Sciences</institution>, Huairou District, Beijing,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Chu Long" sort="Zhang, Chu Long" uniqKey="Zhang C" first="Chu-Long" last="Zhang">Chu-Long Zhang</name><affiliation wicri:level="1"><nlm:aff id="AFF0001"><institution>State Key Laboratory for Rice Biology, Institute of Biotechnology, Zhejiang University</institution>, Hangzhou,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Lin, Fu Cheng" sort="Lin, Fu Cheng" uniqKey="Lin F" first="Fu-Cheng" last="Lin">Fu-Cheng Lin</name><affiliation wicri:level="1"><nlm:aff id="AFF0001"><institution>State Key Laboratory for Rice Biology, Institute of Biotechnology, Zhejiang University</institution>, Hangzhou,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></analytic><series><title level="j">Mycology</title><idno type="ISSN">2150-1203</idno><idno type="eISSN">2150-1211</idno><imprint><date when="2018">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><title>ABSTRACT</title><p><italic>Russula</italic> is a worldwid genus which has a high species diversity . Aiming accurate and rapid species identification, candidate genes <italic>nLSU</italic> (28S), <italic>ITS, tef-1α, mtSSU, rpb1</italic>, and <italic>rpb2</italic>, were analysed as potential DNA barcodes. This analysis included 433 sequences from 38 well-circumscribed <italic>Russula</italic> species of eight subgenera. Two vital standards were analysed for success species identification using DNA barcodes, specifically inter- and intra-specific variations together with the success rates of PCR amplification and sequencing. Although the gap between inter- and intra-specific variations was narrow, <italic>ITS</italic> met the qualification standards for a target DNA barcode. Overlapping inter- and intra-specific pairwise distances were observed in <italic>nLSU, tef-1α, mtSSU</italic>, and <italic>rpb2</italic>. The success rates of PCR amplification and sequencing in <italic>mtSSU</italic> and <italic>rpb1</italic> were lower than those of others. Gene combinations were also investigated for resolution of species recognition. <italic>ITS-rpb2</italic> was suggested as the likely target DNA barcode for <italic>Russula</italic>, owing to the two viatal standards above. Since <italic>nLSU</italic> has the lowest minimum of inter-specific variation, and <italic>tef-1α</italic> has the highest overlap between intra- and inter-species variations among the candidate genes, they are disqualified from the selection for DNA barcode of <italic>Russula</italic>.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Adam K, S" uniqKey="Adam K S">S Adamčík</name></author><author><name sortKey="Cabo, M" uniqKey="Cabo M">M Caboň</name></author><author><name sortKey="Eberhardt, U" uniqKey="Eberhardt U">U Eberhardt</name></author><author><name sortKey="Saba, M" uniqKey="Saba M">M Saba</name></author><author><name sortKey="Hampe, F" uniqKey="Hampe F">F Hampe</name></author><author><name sortKey="Slovak, M" uniqKey="Slovak M">M Slovák</name></author><author><name sortKey="Kleine, J" uniqKey="Kleine J">J Kleine</name></author><author><name sortKey="Marxmuller, H" uniqKey="Marxmuller H">H Marxmüller</name></author><author><name sortKey="Jan Ovi Ova, S" uniqKey="Jan Ovi Ova S">S Jančovičová</name></author><author><name sortKey="Pfister, Dh" uniqKey="Pfister D">DH Pfister</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Adam K, S" uniqKey="Adam K S">S Adamčík</name></author><author><name sortKey="Slovak, M" uniqKey="Slovak M">M Slovák</name></author><author><name sortKey="Eberhardt, U" uniqKey="Eberhardt U">U Eberhardt</name></author><author><name sortKey="Ronikier, A" uniqKey="Ronikier A">A Ronikier</name></author><author><name sortKey="Jairus, T" uniqKey="Jairus T">T Jairus</name></author><author><name sortKey="Hampe, F" uniqKey="Hampe F">F Hampe</name></author><author><name sortKey="Verbeken, A" uniqKey="Verbeken A">A. 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sortKey="Moncalvo, J M" uniqKey="Moncalvo J">J-M Moncalvo</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhu, Zx" uniqKey="Zhu Z">ZX Zhu</name></author><author><name sortKey="Zeng, Zq" uniqKey="Zeng Z">ZQ Zeng</name></author><author><name sortKey="Zhuang, Wy" uniqKey="Zhuang W">WY Zhuang</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Li, Guo Jie" sort="Li, Guo Jie" uniqKey="Li G" first="Guo-Jie" last="Li">Guo-Jie Li</name></noRegion><name sortKey="Li, Guo Jie" sort="Li, Guo Jie" uniqKey="Li G" first="Guo-Jie" last="Li">Guo-Jie Li</name><name sortKey="Lin, Fu Cheng" sort="Lin, Fu Cheng" uniqKey="Lin F" first="Fu-Cheng" last="Lin">Fu-Cheng Lin</name><name sortKey="Zhang, Chu Long" sort="Zhang, Chu Long" uniqKey="Zhang C" first="Chu-Long" last="Zhang">Chu-Long Zhang</name><name sortKey="Zhao, Rui Lin" sort="Zhao, Rui Lin" uniqKey="Zhao R" first="Rui-Lin" last="Zhao">Rui-Lin Zhao</name><name sortKey="Zhao, Rui Lin" sort="Zhao, Rui Lin" uniqKey="Zhao R" first="Rui-Lin" last="Zhao">Rui-Lin Zhao</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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