Genome sequence of Plasmopara viticola and insight into the pathogenic mechanism.
Identifieur interne : 000325 ( Main/Exploration ); précédent : 000324; suivant : 000326Genome sequence of Plasmopara viticola and insight into the pathogenic mechanism.
Auteurs : Ling Yin [République populaire de Chine] ; Yunhe An [République populaire de Chine] ; Junjie Qu [République populaire de Chine] ; Xinlong Li [République populaire de Chine] ; Yali Zhang [République populaire de Chine] ; Ian Dry [Australie] ; Huijuan Wu [République populaire de Chine] ; Jiang Lu [République populaire de Chine]Source :
- Scientific reports [ 2045-2322 ] ; 2017.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Arabidopsis, Maladies des plantes.
- microbiologie : Arabidopsis, Maladies des plantes, Vitis.
- physiologie : Oomycetes.
- Génome, Interactions hôte-pathogène, Évolution moléculaire.
English descriptors
- KwdEn :
- MESH :
- genetics : Arabidopsis, Plant Diseases.
- microbiology : Arabidopsis, Plant Diseases, Vitis.
- physiology : Oomycetes.
- Evolution, Molecular, Genome, Host-Pathogen Interactions.
Abstract
Plasmopara viticola causes downy mildew disease of grapevine which is one of the most devastating diseases of viticulture worldwide. Here we report a 101.3 Mb whole genome sequence of P. viticola isolate 'JL-7-2' obtained by a combination of Illumina and PacBio sequencing technologies. The P. viticola genome contains 17,014 putative protein-coding genes and has ~26% repetitive sequences. A total of 1,301 putative secreted proteins, including 100 putative RXLR effectors and 90 CRN effectors were identified in this genome. In the secretome, 261 potential pathogenicity genes and 95 carbohydrate-active enzymes were predicted. Transcriptional analysis revealed that most of the RXLR effectors, pathogenicity genes and carbohydrate-active enzymes were significantly up-regulated during infection. Comparative genomic analysis revealed that P. viticola evolved independently from the Arabidopsis downy mildew pathogen Hyaloperonospora arabidopsidis. The availability of the P. viticola genome provides a valuable resource not only for comparative genomic analysis and evolutionary studies among oomycetes, but also enhance our knowledge on the mechanism of interactions between this biotrophic pathogen and its host.
DOI: 10.1038/srep46553
PubMed: 28417959
PubMed Central: PMC5394536
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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de Chine</country><wicri:regionArea>Guangxi Crop Genetic Improvement and Biotechnology Laboratory, Guangxi Academy of Agricultural Sciences, Nanning 530007</wicri:regionArea><wicri:noRegion>Nanning 530007</wicri:noRegion></affiliation></author><author><name sortKey="Li, Xinlong" sort="Li, Xinlong" uniqKey="Li X" first="Xinlong" last="Li">Xinlong Li</name><affiliation wicri:level="1"><nlm:affiliation>College of Food Science and Nutritional Engineering, China Agricultural University, Beijing 100083, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Food Science and Nutritional Engineering, China Agricultural University, Beijing 100083</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Zhang, Yali" sort="Zhang, Yali" uniqKey="Zhang Y" first="Yali" last="Zhang">Yali Zhang</name><affiliation wicri:level="1"><nlm:affiliation>College of Food Science 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Wu</name><affiliation wicri:level="1"><nlm:affiliation>Beijing Center for Physical and Chemical Analysis, Beijing 100089, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Beijing Center for Physical and Chemical Analysis, Beijing 100089</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Lu, Jiang" sort="Lu, Jiang" uniqKey="Lu J" first="Jiang" last="Lu">Jiang Lu</name><affiliation wicri:level="1"><nlm:affiliation>College of Food Science and Nutritional Engineering, China Agricultural University, Beijing 100083, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Food Science and Nutritional Engineering, China Agricultural University, Beijing 100083</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:affiliation>Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200024, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200024</wicri:regionArea><wicri:noRegion>Shanghai 200024</wicri:noRegion></affiliation></author></analytic><series><title level="j">Scientific reports</title><idno type="eISSN">2045-2322</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Arabidopsis (genetics)</term><term>Arabidopsis (microbiology)</term><term>Evolution, Molecular (MeSH)</term><term>Genome (MeSH)</term><term>Host-Pathogen Interactions (MeSH)</term><term>Oomycetes (physiology)</term><term>Plant Diseases (genetics)</term><term>Plant Diseases (microbiology)</term><term>Vitis (microbiology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Arabidopsis (génétique)</term><term>Arabidopsis (microbiologie)</term><term>Génome (MeSH)</term><term>Interactions hôte-pathogène (MeSH)</term><term>Maladies des plantes (génétique)</term><term>Maladies des plantes (microbiologie)</term><term>Oomycetes (physiologie)</term><term>Vitis (microbiologie)</term><term>Évolution moléculaire (MeSH)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Arabidopsis</term><term>Plant Diseases</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Arabidopsis</term><term>Maladies des plantes</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Arabidopsis</term><term>Maladies des plantes</term><term>Vitis</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Arabidopsis</term><term>Plant Diseases</term><term>Vitis</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Oomycetes</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Oomycetes</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Evolution, Molecular</term><term>Genome</term><term>Host-Pathogen Interactions</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Génome</term><term>Interactions hôte-pathogène</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Plasmopara viticola causes downy mildew disease of grapevine which is one of the most devastating diseases of viticulture worldwide. Here we report a 101.3 Mb whole genome sequence of P. viticola isolate 'JL-7-2' obtained by a combination of Illumina and PacBio sequencing technologies. The P. viticola genome contains 17,014 putative protein-coding genes and has ~26% repetitive sequences. A total of 1,301 putative secreted proteins, including 100 putative RXLR effectors and 90 CRN effectors were identified in this genome. In the secretome, 261 potential pathogenicity genes and 95 carbohydrate-active enzymes were predicted. Transcriptional analysis revealed that most of the RXLR effectors, pathogenicity genes and carbohydrate-active enzymes were significantly up-regulated during infection. Comparative genomic analysis revealed that P. viticola evolved independently from the Arabidopsis downy mildew pathogen Hyaloperonospora arabidopsidis. The availability of the P. viticola genome provides a valuable resource not only for comparative genomic analysis and evolutionary studies among oomycetes, but also enhance our knowledge on the mechanism of interactions between this biotrophic pathogen and its host.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">28417959</PMID><DateCompleted><Year>2019</Year><Month>07</Month><Day>15</Day></DateCompleted><DateRevised><Year>2019</Year><Month>07</Month><Day>15</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2045-2322</ISSN><JournalIssue CitedMedium="Internet"><Volume>7</Volume><PubDate><Year>2017</Year><Month>04</Month><Day>18</Day></PubDate></JournalIssue><Title>Scientific reports</Title><ISOAbbreviation>Sci Rep</ISOAbbreviation></Journal><ArticleTitle>Genome sequence of Plasmopara viticola and insight into the pathogenic mechanism.</ArticleTitle><Pagination><MedlinePgn>46553</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/srep46553</ELocationID><Abstract><AbstractText>Plasmopara viticola causes downy mildew disease of grapevine which is one of the most devastating diseases of viticulture worldwide. Here we report a 101.3 Mb whole genome sequence of P. viticola isolate 'JL-7-2' obtained by a combination of Illumina and PacBio sequencing technologies. The P. viticola genome contains 17,014 putative protein-coding genes and has ~26% repetitive sequences. A total of 1,301 putative secreted proteins, including 100 putative RXLR effectors and 90 CRN effectors were identified in this genome. In the secretome, 261 potential pathogenicity genes and 95 carbohydrate-active enzymes were predicted. Transcriptional analysis revealed that most of the RXLR effectors, pathogenicity genes and carbohydrate-active enzymes were significantly up-regulated during infection. Comparative genomic analysis revealed that P. viticola evolved independently from the Arabidopsis downy mildew pathogen Hyaloperonospora arabidopsidis. The availability of the P. viticola genome provides a valuable resource not only for comparative genomic analysis and evolutionary studies among oomycetes, but also enhance our knowledge on the mechanism of interactions between this biotrophic pathogen and its host.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Yin</LastName><ForeName>Ling</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>College of Food Science and Nutritional Engineering, China Agricultural University, Beijing 100083, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Guangxi Crop Genetic Improvement and Biotechnology Laboratory, Guangxi Academy of Agricultural Sciences, Nanning 530007, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>An</LastName><ForeName>Yunhe</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>College of Food Science and Nutritional Engineering, China Agricultural University, Beijing 100083, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Beijing Center for Physical and Chemical Analysis, Beijing 100089, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Qu</LastName><ForeName>Junjie</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Guangxi Crop Genetic Improvement and Biotechnology Laboratory, Guangxi Academy of Agricultural Sciences, Nanning 530007, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Xinlong</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>College of Food Science and Nutritional Engineering, China Agricultural University, Beijing 100083, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Yali</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>College of Food Science and Nutritional Engineering, China Agricultural University, Beijing 100083, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dry</LastName><ForeName>Ian</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>CSIRO Agriculture &Food, Wine Innovation West Building, Hartley Grove, Urrbrae, SA 5064, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wu</LastName><ForeName>Huijuan</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Beijing Center for Physical and Chemical Analysis, Beijing 100089, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lu</LastName><ForeName>Jiang</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>College of Food Science and Nutritional Engineering, China Agricultural University, Beijing 100083, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200024, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>04</Month><Day>18</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Sci Rep</MedlineTA><NlmUniqueID>101563288</NlmUniqueID><ISSNLinking>2045-2322</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D017360" MajorTopicYN="N">Arabidopsis</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D019143" MajorTopicYN="Y">Evolution, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016678" 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first="Ling" last="Yin">Ling Yin</name></noRegion><name sortKey="An, Yunhe" sort="An, Yunhe" uniqKey="An Y" first="Yunhe" last="An">Yunhe An</name><name sortKey="An, Yunhe" sort="An, Yunhe" uniqKey="An Y" first="Yunhe" last="An">Yunhe An</name><name sortKey="Li, Xinlong" sort="Li, Xinlong" uniqKey="Li X" first="Xinlong" last="Li">Xinlong Li</name><name sortKey="Lu, Jiang" sort="Lu, Jiang" uniqKey="Lu J" first="Jiang" last="Lu">Jiang Lu</name><name sortKey="Lu, Jiang" sort="Lu, Jiang" uniqKey="Lu J" first="Jiang" last="Lu">Jiang Lu</name><name sortKey="Qu, Junjie" sort="Qu, Junjie" uniqKey="Qu J" first="Junjie" last="Qu">Junjie Qu</name><name sortKey="Wu, Huijuan" sort="Wu, Huijuan" uniqKey="Wu H" first="Huijuan" last="Wu">Huijuan Wu</name><name sortKey="Yin, Ling" sort="Yin, Ling" uniqKey="Yin L" first="Ling" last="Yin">Ling Yin</name><name sortKey="Zhang, Yali" sort="Zhang, Yali" uniqKey="Zhang Y" first="Yali" last="Zhang">Yali Zhang</name></country><country 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