Phylogenetic analysis of hop and grapevine isolates of hop stunt viroid supports a grapevine origin for hop stunt disease.
Identifieur interne : 000978 ( Main/Corpus ); précédent : 000977; suivant : 000979Phylogenetic analysis of hop and grapevine isolates of hop stunt viroid supports a grapevine origin for hop stunt disease.
Auteurs : T. Sano ; R. Mimura ; K. OhshimaSource :
- Virus genes [ 0920-8569 ] ; 2001.
English descriptors
- KwdEn :
- Base Sequence (MeSH), DNA, Complementary (MeSH), Molecular Sequence Data (MeSH), Phylogeny (MeSH), Plant Diseases (virology), Plant Viruses (genetics), Plant Viruses (isolation & purification), Sequence Analysis, DNA (MeSH), Viroids (genetics), Viroids (isolation & purification), Viroids (physiology).
- MESH :
- chemical : DNA, Complementary.
- genetics : Plant Viruses, Viroids.
- isolation & purification : Plant Viruses, Viroids.
- physiology : Viroids.
- virology : Plant Diseases.
- Base Sequence, Molecular Sequence Data, Phylogeny, Sequence Analysis, DNA.
Abstract
We have examined sequence variability among nine isolates of hop stunt viroid (HSVd) collected from hop gardens in Tohoku district in Japan, the only area in the world where hop stunt disease is endemic. Six different consensus and one-consensus sequences as well as 12 sequence variants were detected in the nine HSVd-hop isolates, which suggested the sequence of HSVd-hop was remarkably variable. A neighbor-joining analysis was carried out on the new HSVd-hop sequences together with 44 previously described variants of HSVd isolated from hop and other species. All the HSVd-hop sequences recovered from hops cultivated in the Tohoku district of Japan as well as the type isolate and two Korean isolates form a cluster with the HSVd-g subtype 1 commonly recovered from grapevine. This close relationship between HSVd-hop and -grapevine isolates strongly supports the grapevine origin for hop stunt disease.
DOI: 10.1023/a:1008182302704
PubMed: 11210940
Links to Exploration step
pubmed:11210940Le document en format XML
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Ohshima</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2001">2001</date><idno type="RBID">pubmed:11210940</idno><idno type="pmid">11210940</idno><idno type="doi">10.1023/a:1008182302704</idno><idno type="wicri:Area/Main/Corpus">000978</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000978</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Phylogenetic analysis of hop and grapevine isolates of hop stunt viroid supports a grapevine origin for hop stunt disease.</title><author><name sortKey="Sano, T" sort="Sano, T" uniqKey="Sano T" first="T" last="Sano">T. Sano</name><affiliation><nlm:affiliation>Laboratory of Plant Pathology, Faculty of Agriculture and Life Science, Hirosaki University, Japan. sano@cc.hirosaki-u.ac.jp</nlm:affiliation></affiliation></author><author><name sortKey="Mimura, R" sort="Mimura, R" uniqKey="Mimura R" first="R" last="Mimura">R. Mimura</name></author><author><name sortKey="Ohshima, K" sort="Ohshima, K" uniqKey="Ohshima K" first="K" last="Ohshima">K. Ohshima</name></author></analytic><series><title level="j">Virus genes</title><idno type="ISSN">0920-8569</idno><imprint><date when="2001" type="published">2001</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Base Sequence (MeSH)</term><term>DNA, Complementary (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>Phylogeny (MeSH)</term><term>Plant Diseases (virology)</term><term>Plant Viruses (genetics)</term><term>Plant Viruses (isolation & purification)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Viroids (genetics)</term><term>Viroids (isolation & purification)</term><term>Viroids (physiology)</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>DNA, Complementary</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Plant Viruses</term><term>Viroids</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Plant Viruses</term><term>Viroids</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Viroids</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Plant Diseases</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">We have examined sequence variability among nine isolates of hop stunt viroid (HSVd) collected from hop gardens in Tohoku district in Japan, the only area in the world where hop stunt disease is endemic. Six different consensus and one-consensus sequences as well as 12 sequence variants were detected in the nine HSVd-hop isolates, which suggested the sequence of HSVd-hop was remarkably variable. A neighbor-joining analysis was carried out on the new HSVd-hop sequences together with 44 previously described variants of HSVd isolated from hop and other species. All the HSVd-hop sequences recovered from hops cultivated in the Tohoku district of Japan as well as the type isolate and two Korean isolates form a cluster with the HSVd-g subtype 1 commonly recovered from grapevine. This close relationship between HSVd-hop and -grapevine isolates strongly supports the grapevine origin for hop stunt disease.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">11210940</PMID><DateCompleted><Year>2001</Year><Month>08</Month><Day>23</Day></DateCompleted><DateRevised><Year>2019</Year><Month>10</Month><Day>25</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0920-8569</ISSN><JournalIssue CitedMedium="Print"><Volume>22</Volume><Issue>1</Issue><PubDate><Year>2001</Year><Month>Jan</Month></PubDate></JournalIssue><Title>Virus genes</Title><ISOAbbreviation>Virus Genes</ISOAbbreviation></Journal><ArticleTitle>Phylogenetic analysis of hop and grapevine isolates of hop stunt viroid supports a grapevine origin for hop stunt disease.</ArticleTitle><Pagination><MedlinePgn>53-9</MedlinePgn></Pagination><Abstract><AbstractText>We have examined sequence variability among nine isolates of hop stunt viroid (HSVd) collected from hop gardens in Tohoku district in Japan, the only area in the world where hop stunt disease is endemic. Six different consensus and one-consensus sequences as well as 12 sequence variants were detected in the nine HSVd-hop isolates, which suggested the sequence of HSVd-hop was remarkably variable. A neighbor-joining analysis was carried out on the new HSVd-hop sequences together with 44 previously described variants of HSVd isolated from hop and other species. All the HSVd-hop sequences recovered from hops cultivated in the Tohoku district of Japan as well as the type isolate and two Korean isolates form a cluster with the HSVd-g subtype 1 commonly recovered from grapevine. 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