Two dominant loci determine resistance to Phomopsis cane lesions in F1 families of hybrid grapevines.
Identifieur interne : 000266 ( Main/Corpus ); précédent : 000265; suivant : 000267Two dominant loci determine resistance to Phomopsis cane lesions in F1 families of hybrid grapevines.
Auteurs : Paola Barba ; Jacquelyn Lillis ; R Stephen Luce ; Renaud Travadon ; Michael Osier ; Kendra Baumgartner ; Wayne F. Wilcox ; Bruce I. Reisch ; Lance Cadle-DavidsonSource :
- TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik [ 1432-2242 ] ; 2018.
English descriptors
- KwdEn :
- MESH :
- genetics : Disease Resistance, Plant Diseases, Vitis.
- microbiology : Plant Diseases, Vitis.
- Ascomycota, Chromosome Mapping, Genetic Loci, Genotype, Phenotype, Quantitative Trait Loci.
Abstract
KEY MESSAGE
Rapid characterization of novel NB-LRR-associated resistance to Phomopsis cane spot on grapevine using high-throughput sampling and low-coverage sequencing for genotyping, locus mapping and transcriptome analysis provides insights into genetic resistance to a hemibiotrophic fungus. Phomopsis cane and leaf spot, caused by the hemibiotrophic fungus Diaporthe ampelina (syn = Phomopsis viticola), reduces the productivity in grapevines. Host resistance was studied on three F
DOI: 10.1007/s00122-018-3070-1
PubMed: 29468460
PubMed Central: PMC5895676
Links to Exploration step
pubmed:29468460Le document en format XML
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Gosnell School of Life Sciences, Rochester Institute of Technology, Rochester, NY, 14623, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Baumgartner, Kendra" sort="Baumgartner, Kendra" uniqKey="Baumgartner K" first="Kendra" last="Baumgartner">Kendra Baumgartner</name><affiliation><nlm:affiliation>USDA-Agricultural Research Service, Crops Pathology and Genetics Research Unit, Davis, CA, 95616, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Wilcox, Wayne F" sort="Wilcox, Wayne F" uniqKey="Wilcox W" first="Wayne F" last="Wilcox">Wayne F. Wilcox</name><affiliation><nlm:affiliation>Plant Pathology Section, School of Integrative Plant Science, New York State Agricultural Experiment Station, Cornell University, Geneva, NY, 14456, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Reisch, Bruce I" sort="Reisch, Bruce I" uniqKey="Reisch B" first="Bruce I" last="Reisch">Bruce I. 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Gosnell School of Life Sciences, Rochester Institute of Technology, Rochester, NY, 14623, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Baumgartner, Kendra" sort="Baumgartner, Kendra" uniqKey="Baumgartner K" first="Kendra" last="Baumgartner">Kendra Baumgartner</name><affiliation><nlm:affiliation>USDA-Agricultural Research Service, Crops Pathology and Genetics Research Unit, Davis, CA, 95616, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Wilcox, Wayne F" sort="Wilcox, Wayne F" uniqKey="Wilcox W" first="Wayne F" last="Wilcox">Wayne F. Wilcox</name><affiliation><nlm:affiliation>Plant Pathology Section, School of Integrative Plant Science, New York State Agricultural Experiment Station, Cornell University, Geneva, NY, 14456, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Reisch, Bruce I" sort="Reisch, Bruce I" uniqKey="Reisch B" first="Bruce I" last="Reisch">Bruce I. Reisch</name><affiliation><nlm:affiliation>Horticulture Section, School of Integrative Plant Science, New York State Agricultural Experiment Station, Cornell University, Geneva, NY, 14456, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Cadle Davidson, Lance" sort="Cadle Davidson, Lance" uniqKey="Cadle Davidson L" first="Lance" last="Cadle-Davidson">Lance Cadle-Davidson</name><affiliation><nlm:affiliation>USDA-ARS Grape Genetics Research Unit, Geneva, NY, 14456, USA.</nlm:affiliation></affiliation></author></analytic><series><title level="j">TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</title><idno type="eISSN">1432-2242</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Ascomycota (MeSH)</term><term>Chromosome Mapping (MeSH)</term><term>Disease Resistance (genetics)</term><term>Genetic Loci (MeSH)</term><term>Genotype (MeSH)</term><term>Phenotype (MeSH)</term><term>Plant Diseases (genetics)</term><term>Plant Diseases (microbiology)</term><term>Quantitative Trait Loci (MeSH)</term><term>Vitis (genetics)</term><term>Vitis (microbiology)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Disease Resistance</term><term>Plant Diseases</term><term>Vitis</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term><term>Vitis</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Ascomycota</term><term>Chromosome Mapping</term><term>Genetic Loci</term><term>Genotype</term><term>Phenotype</term><term>Quantitative Trait Loci</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>KEY MESSAGE</b></p><p>Rapid characterization of novel NB-LRR-associated resistance to Phomopsis cane spot on grapevine using high-throughput sampling and low-coverage sequencing for genotyping, locus mapping and transcriptome analysis provides insights into genetic resistance to a hemibiotrophic fungus. Phomopsis cane and leaf spot, caused by the hemibiotrophic fungus Diaporthe ampelina (syn = Phomopsis viticola), reduces the productivity in grapevines. Host resistance was studied on three F</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">29468460</PMID><DateCompleted><Year>2018</Year><Month>04</Month><Day>23</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-2242</ISSN><JournalIssue CitedMedium="Internet"><Volume>131</Volume><Issue>5</Issue><PubDate><Year>2018</Year><Month>May</Month></PubDate></JournalIssue><Title>TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</Title><ISOAbbreviation>Theor Appl Genet</ISOAbbreviation></Journal><ArticleTitle>Two dominant loci determine resistance to Phomopsis cane lesions in F<sub>1</sub> families of hybrid grapevines.</ArticleTitle><Pagination><MedlinePgn>1173-1189</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00122-018-3070-1</ELocationID><Abstract><AbstractText Label="KEY MESSAGE" NlmCategory="UNASSIGNED">Rapid characterization of novel NB-LRR-associated resistance to Phomopsis cane spot on grapevine using high-throughput sampling and low-coverage sequencing for genotyping, locus mapping and transcriptome analysis provides insights into genetic resistance to a hemibiotrophic fungus. Phomopsis cane and leaf spot, caused by the hemibiotrophic fungus Diaporthe ampelina (syn = Phomopsis viticola), reduces the productivity in grapevines. Host resistance was studied on three F<sub>1</sub> families derived from crosses involving resistant genotypes 'Horizon', Illinois 547-1, Vitis cinerea B9 and V. vinifera 'Chardonnay'. All families had progeny with extremely susceptible phenotypes, developing lesions on both dormant canes and maturing fruit clusters. Segregation of symptoms was observed under natural levels of inoculum in the field, while phenotypes on green shoots were confirmed under controlled inoculations in greenhouse. High-density genetic maps were used to localize novel qualitative resistance loci named Rda1 and Rda2 from V. cinerea B9 and 'Horizon', respectively. Co-linearity between reference genetic and physical maps allowed localization of Rda2 locus between 1.5 and 2.4 Mbp on chromosome 7, and Rda1 locus between 19.3 and 19.6 Mbp of chromosome 15, which spans a cluster of five NB-LRR genes. Further dissection of this locus was obtained by QTL mapping of gene expression values 14 h after inoculation across a subset of the 'Chardonnay' × V. cinerea B9 progeny. This provided evidence for the association between transcript levels of two of these NB-LRR genes with Rda1, with increased NB-LRR expression among susceptible progeny. In resistant parent V. cinerea B9, inoculation with D. ampelina was characterized by up-regulation of SA-associated genes and down-regulation of ethylene pathways, suggesting an R-gene-mediated response. With dominant effects associated with disease-free berries and minimal symptoms on canes, Rda1 and Rda2 are promising loci for grapevine genetic improvement.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Barba</LastName><ForeName>Paola</ForeName><Initials>P</Initials><Identifier Source="ORCID">http://orcid.org/0000-0001-9485-4733</Identifier><AffiliationInfo><Affiliation>Plant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, 14853, USA. paola.barba@inia.cl.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Instituto de Investigaciones Agropecuarias, INIA La Platina, Santa Rosa, 11610, Santiago, Chile. paola.barba@inia.cl.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lillis</LastName><ForeName>Jacquelyn</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>USDA-ARS Grape Genetics Research Unit, Geneva, NY, 14456, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Luce</LastName><ForeName>R Stephen</ForeName><Initials>RS</Initials><AffiliationInfo><Affiliation>Horticulture Section, School of Integrative Plant Science, New York State Agricultural Experiment Station, Cornell University, Geneva, NY, 14456, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Travadon</LastName><ForeName>Renaud</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, University of California, Davis, CA, 95616, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Osier</LastName><ForeName>Michael</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Thomas H. Gosnell School of Life Sciences, Rochester Institute of Technology, Rochester, NY, 14623, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Baumgartner</LastName><ForeName>Kendra</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>USDA-Agricultural Research Service, Crops Pathology and Genetics Research Unit, Davis, CA, 95616, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wilcox</LastName><ForeName>Wayne F</ForeName><Initials>WF</Initials><AffiliationInfo><Affiliation>Plant Pathology Section, School of Integrative Plant Science, New York State Agricultural Experiment Station, Cornell University, Geneva, NY, 14456, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Reisch</LastName><ForeName>Bruce I</ForeName><Initials>BI</Initials><AffiliationInfo><Affiliation>Horticulture Section, School of Integrative Plant Science, New York State Agricultural Experiment Station, Cornell University, Geneva, NY, 14456, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cadle-Davidson</LastName><ForeName>Lance</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>USDA-ARS Grape Genetics Research Unit, Geneva, NY, 14456, USA.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>2011-51181-30635</GrantID><Agency>National Institute of Food and Agriculture</Agency><Country></Country></Grant><Grant><GrantID>2012-51181-19954</GrantID><Agency>National Institute of Food and Agriculture</Agency><Country></Country></Grant><Grant><GrantID>72120446</GrantID><Agency>Comisión Nacional de Investigación Científica y Tecnológica</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>02</Month><Day>21</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Theor Appl Genet</MedlineTA><NlmUniqueID>0145600</NlmUniqueID><ISSNLinking>0040-5752</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001203" MajorTopicYN="N">Ascomycota</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002874" MajorTopicYN="N">Chromosome Mapping</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D060467" MajorTopicYN="N">Disease Resistance</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D056426" MajorTopicYN="N">Genetic Loci</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010641" MajorTopicYN="N">Phenotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D040641" MajorTopicYN="N">Quantitative Trait Loci</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D027843" MajorTopicYN="N">Vitis</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>10</Month><Day>04</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2018</Year><Month>02</Month><Day>15</Day></PubMedPubDate><PubMedPubDate 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