Detection of Multiple Variants of Grapevine Fanleaf Virus in Single Xiphinema index Nematodes.
Identifieur interne : 000106 ( Main/Corpus ); précédent : 000105; suivant : 000107Detection of Multiple Variants of Grapevine Fanleaf Virus in Single Xiphinema index Nematodes.
Auteurs : Shahinez Garcia ; Jean-Michel Hily ; Véronique Komar ; Claude Gertz ; Gérard Demangeat ; Olivier Lemaire ; Emmanuelle VigneSource :
- Viruses [ 1999-4915 ] ; 2019.
English descriptors
- KwdEn :
- MESH :
- chemical : RNA, Viral.
- genetics : Nepovirus.
- methods : Computational Biology.
- parasitology : Vitis.
- virology : Nematoda, Plant Diseases, Vitis.
- Animals, Disease Vectors, Genetic Variation, High-Throughput Nucleotide Sequencing, Phylogeny.
Abstract
Grapevine fanleaf virus (GFLV) is responsible for a widespread disease in vineyards worldwide. Its genome is composed of two single-stranded positive-sense RNAs, which both show a high genetic diversity. The virus is transmitted from grapevine to grapevine by the ectoparasitic nematode Xiphinema index. Grapevines in diseased vineyards are often infected by multiple genetic variants of GFLV but no information is available on the molecular composition of virus variants retained in X. index following nematodes feeding on roots. In this work, aviruliferous X. index were fed on three naturally GFLV-infected grapevines for which the virome was characterized by RNAseq. Six RNA-1 and four RNA-2 molecules were assembled segregating into four and three distinct phylogenetic clades of RNA-1 and RNA-2, respectively. After 19 months of rearing, single and pools of 30 X. index tested positive for GFLV. Additionally, either pooled or single X. index carried multiple variants of the two GFLV genomic RNAs. However, the full viral genetic diversity found in the leaves of infected grapevines was not detected in viruliferous nematodes, indicating a genetic bottleneck. Our results provide new insights into the complexity of GFLV populations and the putative role of X. index as reservoirs of virus diversity.
DOI: 10.3390/v11121139
PubMed: 31835488
PubMed Central: PMC6950412
Links to Exploration step
pubmed:31835488Le document en format XML
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<term>Disease Vectors (MeSH)</term>
<term>Genetic Variation (MeSH)</term>
<term>High-Throughput Nucleotide Sequencing (MeSH)</term>
<term>Nematoda (virology)</term>
<term>Nepovirus (genetics)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Diseases (virology)</term>
<term>RNA, Viral (MeSH)</term>
<term>Vitis (parasitology)</term>
<term>Vitis (virology)</term>
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<keywords scheme="MESH" qualifier="parasitology" xml:lang="en"><term>Vitis</term>
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<keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Nematoda</term>
<term>Plant Diseases</term>
<term>Vitis</term>
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<front><div type="abstract" xml:lang="en">Grapevine fanleaf virus (GFLV) is responsible for a widespread disease in vineyards worldwide. Its genome is composed of two single-stranded positive-sense RNAs, which both show a high genetic diversity. The virus is transmitted from grapevine to grapevine by the ectoparasitic nematode <i>Xiphinema index</i>
. Grapevines in diseased vineyards are often infected by multiple genetic variants of GFLV but no information is available on the molecular composition of virus variants retained in <i>X. index</i>
following nematodes feeding on roots. In this work, aviruliferous <i>X. index</i>
were fed on three naturally GFLV-infected grapevines for which the virome was characterized by RNAseq. Six RNA-1 and four RNA-2 molecules were assembled segregating into four and three distinct phylogenetic clades of RNA-1 and RNA-2, respectively. After 19 months of rearing, single and pools of 30 <i>X. index</i>
tested positive for GFLV. Additionally, either pooled or single <i>X. index</i>
carried multiple variants of the two GFLV genomic RNAs. However, the full viral genetic diversity found in the leaves of infected grapevines was not detected in viruliferous nematodes, indicating a genetic bottleneck. Our results provide new insights into the complexity of GFLV populations and the putative role of <i>X. index</i>
as reservoirs of virus diversity.</div>
</front>
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<ArticleTitle>Detection of Multiple Variants of Grapevine Fanleaf Virus in Single <i>Xiphinema index</i>
Nematodes.</ArticleTitle>
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<Abstract><AbstractText>Grapevine fanleaf virus (GFLV) is responsible for a widespread disease in vineyards worldwide. Its genome is composed of two single-stranded positive-sense RNAs, which both show a high genetic diversity. The virus is transmitted from grapevine to grapevine by the ectoparasitic nematode <i>Xiphinema index</i>
. Grapevines in diseased vineyards are often infected by multiple genetic variants of GFLV but no information is available on the molecular composition of virus variants retained in <i>X. index</i>
following nematodes feeding on roots. In this work, aviruliferous <i>X. index</i>
were fed on three naturally GFLV-infected grapevines for which the virome was characterized by RNAseq. Six RNA-1 and four RNA-2 molecules were assembled segregating into four and three distinct phylogenetic clades of RNA-1 and RNA-2, respectively. After 19 months of rearing, single and pools of 30 <i>X. index</i>
tested positive for GFLV. Additionally, either pooled or single <i>X. index</i>
carried multiple variants of the two GFLV genomic RNAs. However, the full viral genetic diversity found in the leaves of infected grapevines was not detected in viruliferous nematodes, indicating a genetic bottleneck. Our results provide new insights into the complexity of GFLV populations and the putative role of <i>X. index</i>
as reservoirs of virus diversity.</AbstractText>
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</AffiliationInfo>
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</AffiliationInfo>
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<AffiliationInfo><Affiliation>Unité Mixte de Recherche (UMR) Santé de la Vigne et Qualité du Vin, Institut National de la Recherche Agronomique (INRA)-Université de Strasbourg, BP 20507, 68021 Colmar Cedex, France.</Affiliation>
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