A field-to-desktop toolchain for X-ray CT densitometry enables tree ring analysis.
Identifieur interne : 000007 ( PubMed/Checkpoint ); précédent : 000006; suivant : 000008A field-to-desktop toolchain for X-ray CT densitometry enables tree ring analysis.
Auteurs : Tom De Mil [Belgique] ; Astrid Vannoppen [Belgique] ; Hans Beeckman [Belgique] ; Joris Van Acker [Belgique] ; Jan Van Den Bulcke [Belgique]Source :
- Annals of botany [ 1095-8290 ] ; 2016.
Abstract
Disentangling tree growth requires more than ring width data only. Densitometry is considered a valuable proxy, yet laborious wood sample preparation and lack of dedicated software limit the widespread use of density profiling for tree ring analysis. An X-ray computed tomography-based toolchain of tree increment cores is presented, which results in profile data sets suitable for visual exploration as well as density-based pattern matching.
DOI: 10.1093/aob/mcw063
PubMed: 27107414
Affiliations:
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uniqKey="De Mil T" first="Tom" last="De Mil">Tom De Mil</name><affiliation wicri:level="4"><nlm:affiliation>UGCT-Woodlab-UGent, Ghent University, Laboratory of Wood Technology, Department of Forest and Water Management, Coupure Links 653, B- 9000 Gent, Belgium Royal Museum for Central Africa, Wood Biology Service, Leuvensesteenweg 13, B-3080 Tervuren, Belgium tom.demil@ugent.be.</nlm:affiliation><country wicri:rule="url">Belgique</country><wicri:regionArea>UGCT-Woodlab-UGent, Ghent University, Laboratory of Wood Technology, Department of Forest and Water Management, Coupure Links 653, B- 9000 Gent, Belgium Royal Museum for Central Africa, Wood Biology Service, Leuvensesteenweg 13, B-3080 Tervuren</wicri:regionArea><orgName type="university">Université de Gand</orgName><placeName><settlement type="city">Gand</settlement><region>Région flamande</region><region type="district" nuts="2">Province de Flandre-Orientale</region></placeName></affiliation></author><author><name sortKey="Vannoppen, Astrid" sort="Vannoppen, Astrid" uniqKey="Vannoppen A" first="Astrid" last="Vannoppen">Astrid Vannoppen</name><affiliation wicri:level="1"><nlm:affiliation>University of Leuven, Division Forest, Nature and Landscape, Department of Earth and Environmental Sciences, Celestijnenlaan 200E, Box 2411, B-3001 Leuven, Belgium.</nlm:affiliation><country xml:lang="fr">Belgique</country><wicri:regionArea>University of Leuven, Division Forest, Nature and Landscape, Department of Earth and Environmental Sciences, Celestijnenlaan 200E, Box 2411, B-3001 Leuven</wicri:regionArea><wicri:noRegion>B-3001 Leuven</wicri:noRegion></affiliation></author><author><name sortKey="Beeckman, Hans" sort="Beeckman, Hans" uniqKey="Beeckman H" first="Hans" last="Beeckman">Hans Beeckman</name><affiliation wicri:level="1"><nlm:affiliation>Royal Museum for Central Africa, Wood Biology Service, Leuvensesteenweg 13, B-3080 Tervuren, Belgium.</nlm:affiliation><country xml:lang="fr">Belgique</country><wicri:regionArea>Royal Museum for Central Africa, Wood Biology Service, Leuvensesteenweg 13, B-3080 Tervuren</wicri:regionArea><wicri:noRegion>B-3080 Tervuren</wicri:noRegion></affiliation></author><author><name sortKey="Van Acker, Joris" sort="Van Acker, Joris" uniqKey="Van Acker J" first="Joris" last="Van Acker">Joris Van Acker</name><affiliation wicri:level="4"><nlm:affiliation>UGCT-Woodlab-UGent, Ghent University, Laboratory of Wood Technology, Department of Forest and Water Management, Coupure Links 653, B- 9000 Gent, Belgium.</nlm:affiliation><country xml:lang="fr">Belgique</country><wicri:regionArea>UGCT-Woodlab-UGent, Ghent University, Laboratory of Wood Technology, Department of Forest and Water Management, Coupure Links 653, B- 9000 Gent</wicri:regionArea><orgName type="university">Université de Gand</orgName><placeName><settlement type="city">Gand</settlement><region>Région flamande</region><region type="district" nuts="2">Province de Flandre-Orientale</region></placeName></affiliation></author><author><name sortKey="Van Den Bulcke, Jan" sort="Van Den Bulcke, Jan" uniqKey="Van Den Bulcke J" first="Jan" last="Van Den Bulcke">Jan Van Den Bulcke</name><affiliation wicri:level="4"><nlm:affiliation>UGCT-Woodlab-UGent, Ghent University, Laboratory of Wood Technology, Department of Forest and Water Management, Coupure Links 653, B- 9000 Gent, Belgium.</nlm:affiliation><country xml:lang="fr">Belgique</country><wicri:regionArea>UGCT-Woodlab-UGent, Ghent University, Laboratory of Wood Technology, Department of Forest and Water Management, Coupure Links 653, B- 9000 Gent</wicri:regionArea><orgName type="university">Université de Gand</orgName><placeName><settlement type="city">Gand</settlement><region>Région flamande</region><region type="district" nuts="2">Province de Flandre-Orientale</region></placeName></affiliation></author></analytic><series><title level="j">Annals of botany</title><idno type="eISSN">1095-8290</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Disentangling tree growth requires more than ring width data only. Densitometry is considered a valuable proxy, yet laborious wood sample preparation and lack of dedicated software limit the widespread use of density profiling for tree ring analysis. An X-ray computed tomography-based toolchain of tree increment cores is presented, which results in profile data sets suitable for visual exploration as well as density-based pattern matching.</div></front></TEI><pubmed><MedlineCitation Status="In-Data-Review" Owner="NLM"><PMID Version="1">27107414</PMID><DateCreated><Year>2016</Year><Month>06</Month><Day>14</Day></DateCreated><DateRevised><Year>2016</Year><Month>06</Month><Day>16</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1095-8290</ISSN><JournalIssue CitedMedium="Internet"><Volume>117</Volume><Issue>7</Issue><PubDate><Year>2016</Year><Month>Jun</Month></PubDate></JournalIssue><Title>Annals of botany</Title><ISOAbbreviation>Ann. Bot.</ISOAbbreviation></Journal><ArticleTitle>A field-to-desktop toolchain for X-ray CT densitometry enables tree ring analysis.</ArticleTitle><Pagination><MedlinePgn>1187-96</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1093/aob/mcw063</ELocationID><Abstract><AbstractText Label="BACKGROUND AND AIMS" NlmCategory="OBJECTIVE">Disentangling tree growth requires more than ring width data only. Densitometry is considered a valuable proxy, yet laborious wood sample preparation and lack of dedicated software limit the widespread use of density profiling for tree ring analysis. An X-ray computed tomography-based toolchain of tree increment cores is presented, which results in profile data sets suitable for visual exploration as well as density-based pattern matching.</AbstractText><AbstractText Label="METHODS" NlmCategory="METHODS">Two temperate (Quercus petraea, Fagus sylvatica) and one tropical species (Terminalia superba) were used for density profiling using an X-ray computed tomography facility with custom-made sample holders and dedicated processing software.</AbstractText><AbstractText Label="KEY RESULTS" NlmCategory="RESULTS">Density-based pattern matching is developed and able to detect anomalies in ring series that can be corrected via interactive software.</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">A digital workflow allows generation of structure-corrected profiles of large sets of cores in a short time span that provide sufficient intra-annual density information for tree ring analysis. Furthermore, visual exploration of such data sets is of high value. The dated profiles can be used for high-resolution chronologies and also offer opportunities for fast screening of lesser studied tropical tree species.</AbstractText><CopyrightInformation>© The Author 2016. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>De Mil</LastName><ForeName>Tom</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>UGCT-Woodlab-UGent, Ghent University, Laboratory of Wood Technology, Department of Forest and Water Management, Coupure Links 653, B- 9000 Gent, Belgium Royal Museum for Central Africa, Wood Biology Service, Leuvensesteenweg 13, B-3080 Tervuren, Belgium tom.demil@ugent.be.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Vannoppen</LastName><ForeName>Astrid</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>University of Leuven, Division Forest, Nature and Landscape, Department of Earth and Environmental Sciences, Celestijnenlaan 200E, Box 2411, B-3001 Leuven, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Beeckman</LastName><ForeName>Hans</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Royal Museum for Central Africa, Wood Biology Service, Leuvensesteenweg 13, B-3080 Tervuren, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Van Acker</LastName><ForeName>Joris</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>UGCT-Woodlab-UGent, Ghent University, Laboratory of Wood Technology, Department of Forest and Water Management, Coupure Links 653, B- 9000 Gent, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Van den Bulcke</LastName><ForeName>Jan</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>UGCT-Woodlab-UGent, Ghent University, Laboratory of Wood Technology, Department of Forest and Water Management, Coupure Links 653, B- 9000 Gent, Belgium.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>04</Month><Day>23</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Ann Bot</MedlineTA><NlmUniqueID>0372347</NlmUniqueID><ISSNLinking>0305-7364</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><OtherID Source="NLM">PMC4904179 [Available on 06/01/17]</OtherID><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Cross-dating</Keyword><Keyword MajorTopicYN="N">Fagus sylvatica</Keyword><Keyword MajorTopicYN="N">Quercus petraea</Keyword><Keyword MajorTopicYN="N">Terminalia superba</Keyword><Keyword MajorTopicYN="N">X-ray CT</Keyword><Keyword MajorTopicYN="N">densitometry</Keyword><Keyword MajorTopicYN="N">high-resolution chronologies</Keyword><Keyword MajorTopicYN="N">pattern matching</Keyword><Keyword MajorTopicYN="N">tree ring analysis</Keyword><Keyword MajorTopicYN="N">wood anatomy</Keyword><Keyword MajorTopicYN="N">wood density</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year><Month>12</Month><Day>18</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2016</Year><Month>02</Month><Day>22</Day></PubMedPubDate><PubMedPubDate PubStatus="pmc-release"><Year>2017</Year><Month>06</Month><Day>01</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2016</Year><Month>4</Month><Day>24</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2016</Year><Month>4</Month><Day>24</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2016</Year><Month>4</Month><Day>24</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">27107414</ArticleId><ArticleId IdType="pii">mcw063</ArticleId><ArticleId IdType="doi">10.1093/aob/mcw063</ArticleId><ArticleId IdType="pmc">PMC4904179</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Belgique</li></country><region><li>Province de Flandre-Orientale</li><li>Région flamande</li></region><settlement><li>Gand</li></settlement><orgName><li>Université de Gand</li></orgName></list><tree><country name="Belgique"><region name="Région flamande"><name sortKey="De Mil, Tom" sort="De Mil, Tom" uniqKey="De Mil T" first="Tom" last="De Mil">Tom De Mil</name></region><name sortKey="Beeckman, Hans" sort="Beeckman, Hans" uniqKey="Beeckman H" first="Hans" last="Beeckman">Hans Beeckman</name><name sortKey="Van Acker, Joris" sort="Van Acker, Joris" uniqKey="Van Acker J" first="Joris" last="Van Acker">Joris Van Acker</name><name sortKey="Van Den Bulcke, Jan" sort="Van Den Bulcke, Jan" uniqKey="Van Den Bulcke J" first="Jan" last="Van Den Bulcke">Jan Van Den Bulcke</name><name sortKey="Vannoppen, Astrid" sort="Vannoppen, Astrid" uniqKey="Vannoppen A" first="Astrid" last="Vannoppen">Astrid Vannoppen</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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