Biodiversity in the Cladosporium herbarum complex (Davidiellaceae, Capnodiales), with standardisation of methods for Cladosporium taxonomy and diagnostics
Identifieur interne : 000104 ( Pmc/Curation ); précédent : 000103; suivant : 000105Biodiversity in the Cladosporium herbarum complex (Davidiellaceae, Capnodiales), with standardisation of methods for Cladosporium taxonomy and diagnostics
Auteurs : K. Schubert ; J. Z. Groenewald ; U. Braun ; J. Dijksterhuis ; M. Starink ; C. F. Hill ; P. Zalar ; G. S. De Hoog ; P. W. CrousSource :
- Studies in Mycology [ 0166-0616 ] ; 2007.
Abstract
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DOI: 10.3114/sim.2007.58.05
PubMed: 18490998
PubMed Central: 2104742
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Biodiversity in the <italic>Cladosporium herbarum</italic> complex
(<italic>Davidiellaceae</italic>, <italic>Capnodiales</italic>), with standardisation of
methods for <italic>Cladosporium</italic> taxonomy and diagnostics</title><author><name sortKey="Schubert, K" sort="Schubert, K" uniqKey="Schubert K" first="K." last="Schubert">K. Schubert</name><affiliation><nlm:aff id="aff1"><italic>Botanische Staatssammlung München, Menzinger Strasse 67, D-80638 München, Germany</italic></nlm:aff></affiliation></author><author><name sortKey="Groenewald, J Z" sort="Groenewald, J Z" uniqKey="Groenewald J" first="J. Z." last="Groenewald">J. Z. Groenewald</name><affiliation><nlm:aff id="aff2"><italic>CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands</italic></nlm:aff></affiliation></author><author><name sortKey="Braun, U" sort="Braun, U" uniqKey="Braun U" first="U." last="Braun">U. Braun</name><affiliation><nlm:aff id="aff3"><italic>Martin-Luther-Universität, Institut für Biologie, Geobotanik und Botanischer Garten, Herbarium, Neuwerk 21, D-06099 Halle (Saale), Germany</italic></nlm:aff></affiliation></author><author><name sortKey="Dijksterhuis, J" sort="Dijksterhuis, J" uniqKey="Dijksterhuis J" first="J." last="Dijksterhuis">J. Dijksterhuis</name><affiliation><nlm:aff id="aff2"><italic>CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands</italic></nlm:aff></affiliation></author><author><name sortKey="Starink, M" sort="Starink, M" uniqKey="Starink M" first="M." last="Starink">M. Starink</name><affiliation><nlm:aff id="aff2"><italic>CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands</italic></nlm:aff></affiliation></author><author><name sortKey="Hill, C F" sort="Hill, C F" uniqKey="Hill C" first="C. F." last="Hill">C. F. Hill</name><affiliation><nlm:aff id="aff4"><italic>Plant & Environment Laboratory Biosecurity NZ, Ministry of Agriculture & Forestry, P.O. Box 2095, Auckland 1140, New Zealand</italic></nlm:aff></affiliation></author><author><name sortKey="Zalar, P" sort="Zalar, P" uniqKey="Zalar P" first="P." last="Zalar">P. Zalar</name><affiliation><nlm:aff id="aff5"><italic>Biotechnical Faculty, Department of Biology, Večna pot 111, SI-1000 Ljubljana, Slovenia</italic></nlm:aff></affiliation></author><author><name sortKey="De Hoog, G S" sort="De Hoog, G S" uniqKey="De Hoog G" first="G. S." last="De Hoog">G. S. De Hoog</name><affiliation><nlm:aff id="aff2"><italic>CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands</italic></nlm:aff></affiliation></author><author><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name><affiliation><nlm:aff id="aff2"><italic>CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands</italic></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">18490998</idno><idno type="pmc">2104742</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2104742</idno><idno type="RBID">PMC:2104742</idno><idno type="doi">10.3114/sim.2007.58.05</idno><date when="2007">2007</date><idno type="wicri:Area/Pmc/Corpus">000104</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000104</idno><idno type="wicri:Area/Pmc/Curation">000104</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000104</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Biodiversity in the <italic>Cladosporium herbarum</italic> complex
(<italic>Davidiellaceae</italic>, <italic>Capnodiales</italic>), with standardisation of
methods for <italic>Cladosporium</italic> taxonomy and diagnostics</title><author><name sortKey="Schubert, K" sort="Schubert, K" uniqKey="Schubert K" first="K." last="Schubert">K. Schubert</name><affiliation><nlm:aff id="aff1"><italic>Botanische Staatssammlung München, Menzinger Strasse 67, D-80638 München, Germany</italic></nlm:aff></affiliation></author><author><name sortKey="Groenewald, J Z" sort="Groenewald, J Z" uniqKey="Groenewald J" first="J. Z." last="Groenewald">J. Z. Groenewald</name><affiliation><nlm:aff id="aff2"><italic>CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands</italic></nlm:aff></affiliation></author><author><name sortKey="Braun, U" sort="Braun, U" uniqKey="Braun U" first="U." last="Braun">U. Braun</name><affiliation><nlm:aff id="aff3"><italic>Martin-Luther-Universität, Institut für Biologie, Geobotanik und Botanischer Garten, Herbarium, Neuwerk 21, D-06099 Halle (Saale), Germany</italic></nlm:aff></affiliation></author><author><name sortKey="Dijksterhuis, J" sort="Dijksterhuis, J" uniqKey="Dijksterhuis J" first="J." last="Dijksterhuis">J. Dijksterhuis</name><affiliation><nlm:aff id="aff2"><italic>CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands</italic></nlm:aff></affiliation></author><author><name sortKey="Starink, M" sort="Starink, M" uniqKey="Starink M" first="M." last="Starink">M. Starink</name><affiliation><nlm:aff id="aff2"><italic>CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands</italic></nlm:aff></affiliation></author><author><name sortKey="Hill, C F" sort="Hill, C F" uniqKey="Hill C" first="C. F." last="Hill">C. F. Hill</name><affiliation><nlm:aff id="aff4"><italic>Plant & Environment Laboratory Biosecurity NZ, Ministry of Agriculture & Forestry, P.O. Box 2095, Auckland 1140, New Zealand</italic></nlm:aff></affiliation></author><author><name sortKey="Zalar, P" sort="Zalar, P" uniqKey="Zalar P" first="P." last="Zalar">P. Zalar</name><affiliation><nlm:aff id="aff5"><italic>Biotechnical Faculty, Department of Biology, Večna pot 111, SI-1000 Ljubljana, Slovenia</italic></nlm:aff></affiliation></author><author><name sortKey="De Hoog, G S" sort="De Hoog, G S" uniqKey="De Hoog G" first="G. S." last="De Hoog">G. S. De Hoog</name><affiliation><nlm:aff id="aff2"><italic>CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands</italic></nlm:aff></affiliation></author><author><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name><affiliation><nlm:aff id="aff2"><italic>CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands</italic></nlm:aff></affiliation></author></analytic><series><title level="j">Studies in Mycology</title><idno type="ISSN">0166-0616</idno><idno type="eISSN">1872-9797</idno><imprint><date when="2007">2007</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The <italic>Cladosporium herbarum</italic> complex comprises five species for which
<italic>Davidiella</italic> teleomorphs are known. <italic>Cladosporium herbarum s.
str.</italic> (<italic>D. tassiana</italic>), <italic>C. macrocarpum</italic> (<italic>D.
macrocarpa</italic>) and <italic>C. bruhnei</italic> (<italic>D. allicina</italic>) are
distinguishable by having conidia of different width, and by teleomorph
characters. <italic>Davidiella variabile</italic> is introduced as teleomorph of
<italic>C. variabile</italic>, a homothallic species occurring on <italic>Spinacia</italic>,
and <italic>D. macrospora</italic> is known to be the teleomorph of <italic>C. iridis</italic>on <italic>Iris</italic> spp. The <italic>C. herbarum</italic> complex combines low molecular
distance with a high degree of clonal or inbreeding diversity. Entities differ
from each other by multilocus sequence data and by phenetic differences, and
thus can be interpreted to represent individual taxa. Isolates of the <italic>C.
herbarum</italic> complex that were formerly associated with opportunistic human
infections, cluster with <italic>C. bruhnei</italic>. Several species are newly
described from hypersaline water, namely <italic>C. ramotenellum</italic>, <italic>C.
tenellum</italic>, <italic>C. subinflatum</italic>, and <italic>C. herbaroides</italic>.
<italic>Cladosporium pseudiridis</italic> collected from <italic>Iris</italic> sp. in New
Zealand, is also a member of this species complex and shown to be distinct
from <italic>C. iridis</italic> that occurs on this host elsewhere in the world. A
further new species from New Zealand is <italic>C. sinuosum</italic> on <italic>Fuchsia
excorticata</italic>. <italic>Cladosporium antarcticum</italic> is newly described from a
lichen, <italic>Caloplaca regalis</italic>, collected in Antarctica, and <italic>C.
subtilissimum</italic> from grape berries in the U.S.A., while the new combination
<italic>C. ossifragi</italic>, the oldest valid name of the <italic>Cladosporium</italic>known from <italic>Narthecium</italic> in Europe, is proposed. Standard protocols and
media are herewith proposed to facilitate future morphological examination of
<italic>Cladosporium</italic> spp. in culture, and neotypes or epitypes are proposed
for all species treated.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct></listBibl></div1></back></TEI><pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Stud Mycol</journal-id><journal-title>Studies in Mycology</journal-title><issn pub-type="ppub">0166-0616</issn><issn pub-type="epub">1872-9797</issn><publisher><publisher-name>CBS Fungal Biodiversity Centre</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">18490998</article-id><article-id pub-id-type="pmc">2104742</article-id><article-id pub-id-type="publisher-id">0105</article-id><article-id pub-id-type="doi">10.3114/sim.2007.58.05</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group></article-categories><title-group><article-title>Biodiversity in the <italic>Cladosporium herbarum</italic> complex
(<italic>Davidiellaceae</italic>, <italic>Capnodiales</italic>), with standardisation of
methods for <italic>Cladosporium</italic> taxonomy and diagnostics</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Schubert</surname><given-names>K.</given-names></name><xref ref-type="aff" rid="aff1">1</xref><xref ref-type="corresp" rid="cor1">*</xref></contrib><contrib contrib-type="author"><name><surname>Groenewald</surname><given-names>J. Z.</given-names></name><xref ref-type="aff" rid="aff2">2</xref></contrib><contrib contrib-type="author"><name><surname>Braun</surname><given-names>U.</given-names></name><xref ref-type="aff" rid="aff3">3</xref></contrib><contrib contrib-type="author"><name><surname>Dijksterhuis</surname><given-names>J.</given-names></name><xref ref-type="aff" rid="aff2">2</xref></contrib><contrib contrib-type="author"><name><surname>Starink</surname><given-names>M.</given-names></name><xref ref-type="aff" rid="aff2">2</xref></contrib><contrib contrib-type="author"><name><surname>Hill</surname><given-names>C.F.</given-names></name><xref ref-type="aff" rid="aff4">4</xref></contrib><contrib contrib-type="author"><name><surname>Zalar</surname><given-names>P.</given-names></name><xref ref-type="aff" rid="aff5">5</xref></contrib><contrib contrib-type="author"><name><surname>de Hoog</surname><given-names>G.S.</given-names></name><xref ref-type="aff" rid="aff2">2</xref></contrib><contrib contrib-type="author"><name><surname>Crous</surname><given-names>P.W.</given-names></name><xref ref-type="aff" rid="aff2">2</xref></contrib></contrib-group><aff id="aff1"><label>1</label><italic>Botanische Staatssammlung München, Menzinger Strasse 67, D-80638 München, Germany</italic></aff><aff id="aff2"><label>2</label><italic>CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands</italic></aff><aff id="aff3"><label>3</label><italic>Martin-Luther-Universität, Institut für Biologie, Geobotanik und Botanischer Garten, Herbarium, Neuwerk 21, D-06099 Halle (Saale), Germany</italic></aff><aff id="aff4"><label>4</label><italic>Plant & Environment Laboratory Biosecurity NZ, Ministry of Agriculture & Forestry, P.O. Box 2095, Auckland 1140, New Zealand</italic></aff><aff id="aff5"><label>5</label><italic>Biotechnical Faculty, Department of Biology, Večna pot 111, SI-1000 Ljubljana, Slovenia</italic></aff><author-notes><fn id="cor1"><label>*</label><p><italic>Correspondence</italic>: Konstanze Schubert,
<email>konstanze.schubert@gmx.de</email></p></fn></author-notes><pub-date pub-type="ppub"><year>2007</year></pub-date><volume>58</volume><issue-title>The genus Cladosporium and similar dematiaceous
hyphomycetes</issue-title><fpage>105</fpage><lpage>156</lpage><permissions><copyright-statement>Copyright © 2007 CBS Fungal Biodiversity
Centre</copyright-statement><license><p>You are free to share–to copy, distribute and transmit the work,
under the following conditions:</p><p><bold>Attribution</bold>: You must
attribute the work in the manner specified by the author or licensor (but not
in any way that suggests that they endorse you or your use of the
work).</p><p><bold>Non-commercial</bold>: You may not use this work for
commercial purposes.</p><p><bold>No derivative works</bold>: You may not
alter, transform, or build upon this work.</p><p>For any reuse or
distribution, you must make clear to others the license terms of this work,
which can be found at
<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode">http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode</ext-link>.
Any of the above conditions can be waived if you get permission from the
copyright holder. Nothing in this license impairs or restricts the author's
moral rights.</p></license></permissions><self-uri xlink:title="pdf" xlink:href="5.pdf"></self-uri><abstract><p>The <italic>Cladosporium herbarum</italic> complex comprises five species for which
<italic>Davidiella</italic> teleomorphs are known. <italic>Cladosporium herbarum s.
str.</italic> (<italic>D. tassiana</italic>), <italic>C. macrocarpum</italic> (<italic>D.
macrocarpa</italic>) and <italic>C. bruhnei</italic> (<italic>D. allicina</italic>) are
distinguishable by having conidia of different width, and by teleomorph
characters. <italic>Davidiella variabile</italic> is introduced as teleomorph of
<italic>C. variabile</italic>, a homothallic species occurring on <italic>Spinacia</italic>,
and <italic>D. macrospora</italic> is known to be the teleomorph of <italic>C. iridis</italic>on <italic>Iris</italic> spp. The <italic>C. herbarum</italic> complex combines low molecular
distance with a high degree of clonal or inbreeding diversity. Entities differ
from each other by multilocus sequence data and by phenetic differences, and
thus can be interpreted to represent individual taxa. Isolates of the <italic>C.
herbarum</italic> complex that were formerly associated with opportunistic human
infections, cluster with <italic>C. bruhnei</italic>. Several species are newly
described from hypersaline water, namely <italic>C. ramotenellum</italic>, <italic>C.
tenellum</italic>, <italic>C. subinflatum</italic>, and <italic>C. herbaroides</italic>.
<italic>Cladosporium pseudiridis</italic> collected from <italic>Iris</italic> sp. in New
Zealand, is also a member of this species complex and shown to be distinct
from <italic>C. iridis</italic> that occurs on this host elsewhere in the world. A
further new species from New Zealand is <italic>C. sinuosum</italic> on <italic>Fuchsia
excorticata</italic>. <italic>Cladosporium antarcticum</italic> is newly described from a
lichen, <italic>Caloplaca regalis</italic>, collected in Antarctica, and <italic>C.
subtilissimum</italic> from grape berries in the U.S.A., while the new combination
<italic>C. ossifragi</italic>, the oldest valid name of the <italic>Cladosporium</italic>known from <italic>Narthecium</italic> in Europe, is proposed. Standard protocols and
media are herewith proposed to facilitate future morphological examination of
<italic>Cladosporium</italic> spp. in culture, and neotypes or epitypes are proposed
for all species treated.</p></abstract><kwd-group><kwd>Clonality</kwd><kwd><italic>Davidiella</italic></kwd><kwd>homothallism</kwd><kwd>new species</kwd><kwd>phylogeny</kwd><kwd>recombination</kwd><kwd>taxonomy</kwd></kwd-group></article-meta><notes><fn-group><fn><p><bold>Taxonomic novelties:</bold> <italic>Cladosporium antarcticum</italic> K. Schub.,
Crous & U. Braun, sp. nov., <italic>C. herbaroides</italic> K. Schub., Zalar,
Crous & U. Braun, sp. nov., <italic>C. ossifragi</italic> (Rostr.) U. Braun &
K. Schub., comb. nov., <italic>C. pseudiridis</italic> K. Schub., C.F. Hill, Crous
& U. Braun, sp. nov., <italic>C. ramotenellum</italic> K. Schub., Zalar, Crous
& U. Braun, sp. nov., <italic>C. sinuosum</italic> K. Schub., C.F. Hill, Crous
& U. Braun, sp. nov., <italic>C. subinflatum</italic> K. Schub., Zalar, Crous
& U. Braun, sp. nov., <italic>C. subtilissimum</italic> K. Schub., Dugan, Crous
& U. Braun, sp. nov., <italic>C. tenellum</italic> K. Schub., Zalar, Crous &
U. Braun sp. nov., <italic>Davidiella macrocarpa</italic> Crous, K. Schub. & U.
Braun, sp. nov., <italic>D. variabile</italic> Crous, K. Schub. & U. Braun, sp.
nov.</p></fn></fn-group></notes></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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