Serveur d'exploration sur le chêne en Belgique (avant curation)

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Molecular Analyses of Novel Methanotrophic Communities in Forest Soil That Oxidize Atmospheric Methane

Identifieur interne : 000003 ( Ncbi/Curation ); précédent : 000002; suivant : 000004

Molecular Analyses of Novel Methanotrophic Communities in Forest Soil That Oxidize Atmospheric Methane

Auteurs : Thilo Henckel ; Udo J Ckel ; Sylvia Schnell ; Ralf Conrad

Source :

RBID : PMC:101415

Abstract

Forest and other upland soils are important sinks for atmospheric CH4, consuming 20 to 60 Tg of CH4 per year. Consumption of atmospheric CH4 by soil is a microbiological process. However, little is known about the methanotrophic bacterial community in forest soils. We measured vertical profiles of atmospheric CH4 oxidation rates in a German forest soil and characterized the methanotrophic populations by PCR and denaturing gradient gel electrophoresis (DGGE) with primer sets targeting the pmoA gene, coding for the α subunit of the particulate methane monooxygenase, and the small-subunit rRNA gene (SSU rDNA) of all life. The forest soil was a sink for atmospheric CH4 in situ and in vitro at all times. In winter, atmospheric CH4 was oxidized in a well-defined subsurface soil layer (6 to 14 cm deep), whereas in summer, the complete soil core was active (0 cm to 26 cm deep). The content of total extractable DNA was about 10-fold higher in summer than in winter. It decreased with soil depth (0 to 28 cm deep) from about 40 to 1 μg DNA per g (dry weight) of soil. The PCR product concentration of SSU rDNA of all life was constant both in winter and in summer. However, the PCR product concentration of pmoA changed with depth and season. pmoA was detected only in soil layers with active CH4 oxidation, i.e., 6 to 16 cm deep in winter and throughout the soil core in summer. The same methanotrophic populations were present in winter and summer. Layers with high CH4 consumption rates also exhibited more bands of pmoA in DGGE, indicating that high CH4 oxidation activity was positively correlated with the number of methanotrophic populations present. The pmoA sequences derived from excised DGGE bands were only distantly related to those of known methanotrophs, indicating the existence of unknown methanotrophs involved in atmospheric CH4 consumption.


Url:
PubMed: 10788342
PubMed Central: 101415

Links toward previous steps (curation, corpus...)


Links to Exploration step

PMC:101415

Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Molecular Analyses of Novel Methanotrophic Communities in Forest Soil That Oxidize Atmospheric Methane</title>
<author>
<name sortKey="Henckel, Thilo" sort="Henckel, Thilo" uniqKey="Henckel T" first="Thilo" last="Henckel">Thilo Henckel</name>
</author>
<author>
<name sortKey="J Ckel, Udo" sort="J Ckel, Udo" uniqKey="J Ckel U" first="Udo" last="J Ckel">Udo J Ckel</name>
</author>
<author>
<name sortKey="Schnell, Sylvia" sort="Schnell, Sylvia" uniqKey="Schnell S" first="Sylvia" last="Schnell">Sylvia Schnell</name>
</author>
<author>
<name sortKey="Conrad, Ralf" sort="Conrad, Ralf" uniqKey="Conrad R" first="Ralf" last="Conrad">Ralf Conrad</name>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PMC</idno>
<idno type="pmid">10788342</idno>
<idno type="pmc">101415</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC101415</idno>
<idno type="RBID">PMC:101415</idno>
<date when="2000">2000</date>
<idno type="wicri:Area/Pmc/Corpus">000061</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000061</idno>
<idno type="wicri:Area/Pmc/Curation">000061</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000061</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000270</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000270</idno>
<idno type="wicri:Area/Ncbi/Merge">00003</idno>
<idno type="wicri:Area/Ncbi/Curation">000003</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en" level="a" type="main">Molecular Analyses of Novel Methanotrophic Communities in Forest Soil That Oxidize Atmospheric Methane</title>
<author>
<name sortKey="Henckel, Thilo" sort="Henckel, Thilo" uniqKey="Henckel T" first="Thilo" last="Henckel">Thilo Henckel</name>
</author>
<author>
<name sortKey="J Ckel, Udo" sort="J Ckel, Udo" uniqKey="J Ckel U" first="Udo" last="J Ckel">Udo J Ckel</name>
</author>
<author>
<name sortKey="Schnell, Sylvia" sort="Schnell, Sylvia" uniqKey="Schnell S" first="Sylvia" last="Schnell">Sylvia Schnell</name>
</author>
<author>
<name sortKey="Conrad, Ralf" sort="Conrad, Ralf" uniqKey="Conrad R" first="Ralf" last="Conrad">Ralf Conrad</name>
</author>
</analytic>
<series>
<title level="j">Applied and Environmental Microbiology</title>
<idno type="ISSN">0099-2240</idno>
<idno type="eISSN">1098-5336</idno>
<imprint>
<date when="2000">2000</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass></textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">
<p>Forest and other upland soils are important sinks for atmospheric CH
<sub>4</sub>
, consuming 20 to 60 Tg of CH
<sub>4</sub>
per year. Consumption of atmospheric CH
<sub>4</sub>
by soil is a microbiological process. However, little is known about the methanotrophic bacterial community in forest soils. We measured vertical profiles of atmospheric CH
<sub>4</sub>
oxidation rates in a German forest soil and characterized the methanotrophic populations by PCR and denaturing gradient gel electrophoresis (DGGE) with primer sets targeting the
<italic>pmoA</italic>
gene, coding for the α subunit of the particulate methane monooxygenase, and the small-subunit rRNA gene (SSU rDNA) of all life. The forest soil was a sink for atmospheric CH
<sub>4</sub>
in situ and in vitro at all times. In winter, atmospheric CH
<sub>4</sub>
was oxidized in a well-defined subsurface soil layer (6 to 14 cm deep), whereas in summer, the complete soil core was active (0 cm to 26 cm deep). The content of total extractable DNA was about 10-fold higher in summer than in winter. It decreased with soil depth (0 to 28 cm deep) from about 40 to 1 μg DNA per g (dry weight) of soil. The PCR product concentration of SSU rDNA of all life was constant both in winter and in summer. However, the PCR product concentration of
<italic>pmoA</italic>
changed with depth and season.
<italic>pmoA</italic>
was detected only in soil layers with active CH
<sub>4</sub>
oxidation, i.e., 6 to 16 cm deep in winter and throughout the soil core in summer. The same methanotrophic populations were present in winter and summer. Layers with high CH
<sub>4</sub>
consumption rates also exhibited more bands of
<italic>pmoA</italic>
in DGGE, indicating that high CH
<sub>4</sub>
oxidation activity was positively correlated with the number of methanotrophic populations present. The
<italic>pmoA</italic>
sequences derived from excised DGGE bands were only distantly related to those of known methanotrophs, indicating the existence of unknown methanotrophs involved in atmospheric CH
<sub>4</sub>
consumption.</p>
</div>
</front>
</TEI>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Wicri/Bois/explor/CheneBelgiqueV1/Data/Ncbi/Curation
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000003 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Ncbi/Curation/biblio.hfd -nk 000003 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Wicri/Bois
   |area=    CheneBelgiqueV1
   |flux=    Ncbi
   |étape=   Curation
   |type=    RBID
   |clé=     PMC:101415
   |texte=   Molecular Analyses of Novel Methanotrophic Communities in Forest Soil That Oxidize Atmospheric Methane
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Ncbi/Curation/RBID.i   -Sk "pubmed:10788342" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Ncbi/Curation/biblio.hfd   \
       | NlmPubMed2Wicri -a CheneBelgiqueV1 

Wicri

This area was generated with Dilib version V0.6.27.
Data generation: Tue Feb 21 23:48:11 2017. Site generation: Wed Mar 6 16:29:49 2024