Phylogeny of Penicillium and the segregation of Trichocomaceae into three families
Identifieur interne : 000109 ( Ncbi/Checkpoint ); précédent : 000108; suivant : 000110Phylogeny of Penicillium and the segregation of Trichocomaceae into three families
Auteurs : J. Houbraken ; R. A. SamsonSource :
- Studies in Mycology [ 0166-0616 ] ; 2011.
Abstract
Species of
Url:
DOI: 10.3114/sim.2011.70.01
PubMed: 22308045
PubMed Central: 3233907
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Phylogeny of <italic>Penicillium</italic>
and the segregation of <italic>Trichocomaceae</italic>
into three families</title>
<author><name sortKey="Houbraken, J" sort="Houbraken, J" uniqKey="Houbraken J" first="J." last="Houbraken">J. Houbraken</name>
<affiliation><nlm:aff id="A1"><italic>CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</italic>
</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A2"><italic>Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands.</italic>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Samson, R A" sort="Samson, R A" uniqKey="Samson R" first="R. A." last="Samson">R. A. Samson</name>
<affiliation><nlm:aff id="A1"><italic>CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</italic>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Phylogeny of <italic>Penicillium</italic>
and the segregation of <italic>Trichocomaceae</italic>
into three families</title>
<author><name sortKey="Houbraken, J" sort="Houbraken, J" uniqKey="Houbraken J" first="J." last="Houbraken">J. Houbraken</name>
<affiliation><nlm:aff id="A1"><italic>CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</italic>
</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A2"><italic>Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands.</italic>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Samson, R A" sort="Samson, R A" uniqKey="Samson R" first="R. A." last="Samson">R. A. Samson</name>
<affiliation><nlm:aff id="A1"><italic>CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</italic>
</nlm:aff>
</affiliation>
</author>
</analytic>
<series><title level="j">Studies in Mycology</title>
<idno type="ISSN">0166-0616</idno>
<idno type="eISSN">1872-9797</idno>
<imprint><date when="2011">2011</date>
</imprint>
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<front><div type="abstract" xml:lang="en"><p id="P6">Species of <italic>Trichocomaceae</italic>
occur commonly and are important to both industry and medicine. They are associated with food spoilage and mycotoxin production and can occur in the indoor environment, causing health hazards by the formation of β-glucans, mycotoxins and surface proteins. Some species are opportunistic pathogens, while others are exploited in biotechnology for the production of enzymes, antibiotics and other products. <italic>Penicillium</italic>
belongs phylogenetically to <italic>Trichocomaceae</italic>
and more than 250 species are currently accepted in this genus. In this study, we investigated the relationship of <italic>Penicillium</italic>
to other genera of <italic>Trichocomaceae</italic>
and studied in detail the phylogeny of the genus itself. In order to study these relationships, partial <italic>RPB1</italic>
, <italic>RPB2</italic>
(RNA polymerase II genes), <italic>Tsr1</italic>
(putative ribosome biogenesis protein) and <italic>Cct8</italic>
(putative chaperonin complex component TCP-1) gene sequences were obtained. The <italic>Trichocomaceae</italic>
are divided in three separate families: <italic>Aspergillaceae</italic>
, <italic>Thermoascaceae</italic>
and <italic>Trichocomaceae</italic>
. The <italic>Aspergillaceae</italic>
are characterised by the formation flask-shaped or cylindrical phialides, asci produced inside cleistothecia or surrounded by Hülle cells and mainly ascospores with a furrow or slit, while the <italic>Trichocomaceae</italic>
are defined by the formation of lanceolate phialides, asci borne within a tuft or layer of loose hyphae and ascospores lacking a slit. <italic>Thermoascus</italic>
and <italic>Paecilomyces</italic>
, both members of <italic>Thermoascaceae</italic>
, also form ascospores lacking a furrow or slit, but are differentiated from <italic>Trichocomaceae</italic>
by the production of asci from croziers and their thermotolerant or thermophilic nature. Phylogenetic analysis shows that <italic>Penicillium</italic>
is polyphyletic. The genus is re-defined and a monophyletic genus for both anamorphs and teleomorphs is created (<italic>Penicillium sensu stricto</italic>
). The genera <italic>Thysanophora</italic>
, <italic>Eupenicillium</italic>
, <italic>Chromocleista</italic>
, <italic>Hemicarpenteles</italic>
and <italic>Torulomyces</italic>
belong in <italic>Penicillium</italic>
<italic>s</italic>
. <italic>str</italic>
. and new combinations for the species belonging to these genera are proposed. Analysis of <italic>Penicillium</italic>
below genus rank revealed the presence of 25 clades. A new classification system including both anamorph and teleomorph species is proposed and these 25 clades are treated here as sections. An overview of species belonging to each section is presented.</p>
<sec id="S1"><title>Taxonomic novelties:</title>
<p id="P7"><bold>New sections, all in <italic>Penicillium:</italic>
</bold>
sect. Sclerotiora Houbraken & Samson, sect. <italic>Charlesia</italic>
Houbraken & Samson, sect. <italic>Thysanophora</italic>
Houbraken & Samson,sect. <italic>Ochrosalmonea</italic>
Houbraken & Samson, sect. <italic>Cinnamopurpurea</italic>
Houbraken & Samson, <italic>Fracta</italic>
Houbraken & Samson, sect. <italic>Stolkia</italic>
Houbraken & Samson, sect. <italic>Gracilenta</italic>
Houbraken & Samson, sect. <italic>Citrina</italic>
Houbraken & Samson, sect. <italic>Turbata</italic>
Houbraken & Samson, sect. <italic>Paradoxa</italic>
Houbraken & Samson, sect. <italic>Canescentia</italic>
Houbraken & Samson.</p>
<p id="P8"><bold>New combinations:</bold>
<italic>Penicillium asymmetricum</italic>
(Subramanian & Sudha) Houbraken & Samson, <italic>P. bovifimosum</italic>
(Tuthill & Frisvad) Houbraken & Samson, <italic>P. glaucoalbidum</italic>
(Desmazières) Houbraken & Samson, <italic>P. laeve</italic>
(K. Ando & Manoch) Houbraken & Samson, <italic>P. longisporum</italic>
(Kendrick) Houbraken & Samson, <italic>P. malachiteum</italic>
(Yaguchi & Udagawa) Houbraken & Samson, <italic>P. ovatum</italic>
(K. Ando & Nawawi) Houbraken & Samson, <italic>P. parviverrucosum</italic>
(K. Ando & Pitt) Houbraken & Samson, <italic>P. saturniforme</italic>
(Wang & Zhuang) Houbraken & Samson, <italic>P. taiwanense</italic>
(Matsushima) Houbraken & Samson.</p>
<p id="P9"><bold>New names:</bold>
<italic>Penicillium coniferophilum</italic>
Houbraken & Samson, <italic>P. hennebertii</italic>
Houbraken & Samson, <italic>P. melanostipe</italic>
Houbraken & Samson, <italic>P. porphyreum</italic>
Houbraken & Samson.</p>
</sec>
</div>
</front>
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