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Temporal and spatial genetic structure in Vitellaria paradoxa (shea tree) in an agroforestry system in southern Mali

Identifieur interne : 000309 ( Istex/Corpus ); précédent : 000308; suivant : 000310

Temporal and spatial genetic structure in Vitellaria paradoxa (shea tree) in an agroforestry system in southern Mali

Auteurs : Bokary Allaye Kelly ; Olivier Hardy ; Jean-Marc Bouvet

Source :

RBID : ISTEX:74E48EF473A64E5E860C6E1C87BF1019140845C5

English descriptors

Abstract

Ten microsatellite loci were used to investigate the impact of human activity on the spatial and temporal genetic structure of Vitellaria paradoxa (Sapotaceae), a parkland tree species in agroforestry systems in southern Mali. Two stands (forest and fallow) and three cohorts (adults, juveniles and natural regeneration) in each stand were studied to: (i) compare their levels of genetic diversity (gene diversity, HE; allelic richness, Rs; and inbreeding, FIS); (ii) assess their genetic differentiation (FST); and (iii) compare their levels of spatial genetic structuring. Gene diversity parameters did not vary substantially among stands or cohorts, and tests for bottleneck events were nonsignificant. The inbreeding coefficients were not significantly different from zero in most cases (FIS = −0.025 in forest and 0.045 in fallow), suggesting that the species is probably outbreeding. There was a weak decrease in FIS with age, suggesting inbreeding depression. Differentiation of stands within each cohort was weak (FST = 0.026, 0.0005, 0.010 for adults, juveniles and regeneration, respectively), suggesting extensive gene flow. Cohorts within each stand were little differentiated (FST = −0.001 and 0.001 in forest and fallow, respectively). The spatial genetic structure was more pronounced in fallow than in forest where adults showed no spatial structuring. In conclusion, despite the huge influence of human activity on the life cycle of Vitellaria paradoxa growing in parkland systems, the impact on the pattern of genetic variation at microsatellite loci appears rather limited, possibly due to the buffering effect of extensive gene flow between unmanaged and managed populations.

Url:
DOI: 10.1111/j.1365-294X.2004.02144.x

Links to Exploration step

ISTEX:74E48EF473A64E5E860C6E1C87BF1019140845C5

Le document en format XML

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<div type="abstract" xml:lang="en">Ten microsatellite loci were used to investigate the impact of human activity on the spatial and temporal genetic structure of Vitellaria paradoxa (Sapotaceae), a parkland tree species in agroforestry systems in southern Mali. Two stands (forest and fallow) and three cohorts (adults, juveniles and natural regeneration) in each stand were studied to: (i) compare their levels of genetic diversity (gene diversity, HE; allelic richness, Rs; and inbreeding, FIS); (ii) assess their genetic differentiation (FST); and (iii) compare their levels of spatial genetic structuring. Gene diversity parameters did not vary substantially among stands or cohorts, and tests for bottleneck events were nonsignificant. The inbreeding coefficients were not significantly different from zero in most cases (FIS = −0.025 in forest and 0.045 in fallow), suggesting that the species is probably outbreeding. There was a weak decrease in FIS with age, suggesting inbreeding depression. Differentiation of stands within each cohort was weak (FST = 0.026, 0.0005, 0.010 for adults, juveniles and regeneration, respectively), suggesting extensive gene flow. Cohorts within each stand were little differentiated (FST = −0.001 and 0.001 in forest and fallow, respectively). The spatial genetic structure was more pronounced in fallow than in forest where adults showed no spatial structuring. In conclusion, despite the huge influence of human activity on the life cycle of Vitellaria paradoxa growing in parkland systems, the impact on the pattern of genetic variation at microsatellite loci appears rather limited, possibly due to the buffering effect of extensive gene flow between unmanaged and managed populations.</div>
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<p>Ten microsatellite loci were used to investigate the impact of human activity on the spatial and temporal genetic structure of Vitellaria paradoxa (Sapotaceae), a parkland tree species in agroforestry systems in southern Mali. Two stands (forest and fallow) and three cohorts (adults, juveniles and natural regeneration) in each stand were studied to: (i) compare their levels of genetic diversity (gene diversity, HE; allelic richness, Rs; and inbreeding, FIS); (ii) assess their genetic differentiation (FST); and (iii) compare their levels of spatial genetic structuring. Gene diversity parameters did not vary substantially among stands or cohorts, and tests for bottleneck events were nonsignificant. The inbreeding coefficients were not significantly different from zero in most cases (FIS = −0.025 in forest and 0.045 in fallow), suggesting that the species is probably outbreeding. There was a weak decrease in FIS with age, suggesting inbreeding depression. Differentiation of stands within each cohort was weak (FST = 0.026, 0.0005, 0.010 for adults, juveniles and regeneration, respectively), suggesting extensive gene flow. Cohorts within each stand were little differentiated (FST = −0.001 and 0.001 in forest and fallow, respectively). The spatial genetic structure was more pronounced in fallow than in forest where adults showed no spatial structuring. In conclusion, despite the huge influence of human activity on the life cycle of Vitellaria paradoxa growing in parkland systems, the impact on the pattern of genetic variation at microsatellite loci appears rather limited, possibly due to the buffering effect of extensive gene flow between unmanaged and managed populations.</p>
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<familyName>Allaye Kelly</familyName>
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<personName>
<givenNames>Olivier</givenNames>
<familyName>Hardy</familyName>
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<personName>
<givenNames>Jean‐Marc</givenNames>
<familyName>Bouvet</familyName>
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<unparsedAffiliation>Institut d’Economie Rurale, Programme Ressources Forestières Centre Régional de la Recherche Agronomique de Sikasso, Sikasso, Mali,</unparsedAffiliation>
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<affiliation xml:id="a2" countryCode="BE">
<unparsedAffiliation>Laboratoire de Génétique Evolutive et d’Ecologie vegétale, Université Libre de Bruxelles, Bruxelles, Belgium,</unparsedAffiliation>
</affiliation>
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<unparsedAffiliation>Cirad–Forêt, Campus International de Baillarguet, TA 10C, BP 5035, 34398 Montpellier, cédex, France</unparsedAffiliation>
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<keyword xml:id="k1">forest tree</keyword>
<keyword xml:id="k2">gene flow</keyword>
<keyword xml:id="k3">human impact</keyword>
<keyword xml:id="k4">inbreeding coefficient</keyword>
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<keyword xml:id="k6">microsatellite</keyword>
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<title type="main">Abstract</title>
<p>Ten microsatellite loci were used to investigate the impact of human activity on the spatial and temporal genetic structure of
<i>Vitellaria paradoxa</i>
(Sapotaceae), a parkland tree species in agroforestry systems in southern Mali. Two stands (forest and fallow) and three cohorts (adults, juveniles and natural regeneration) in each stand were studied to: (i) compare their levels of genetic diversity (gene diversity,
<i>H</i>
<sub>E</sub>
; allelic richness,
<i>R</i>
<sub>s</sub>
; and inbreeding,
<i>F</i>
<sub>IS</sub>
); (ii) assess their genetic differentiation (
<i>F</i>
<sub>ST</sub>
); and (iii) compare their levels of spatial genetic structuring. Gene diversity parameters did not vary substantially among stands or cohorts, and tests for bottleneck events were nonsignificant. The inbreeding coefficients were not significantly different from zero in most cases (
<i>F</i>
<sub>IS</sub>
 = −0.025 in forest and 0.045 in fallow), suggesting that the species is probably outbreeding. There was a weak decrease in
<i>F</i>
<sub>IS</sub>
with age, suggesting inbreeding depression. Differentiation of stands within each cohort was weak (
<i>F</i>
<sub>ST</sub>
 = 0.026, 0.0005, 0.010 for adults, juveniles and regeneration, respectively), suggesting extensive gene flow. Cohorts within each stand were little differentiated (
<i>F</i>
<sub>ST</sub>
 = −0.001 and 0.001 in forest and fallow, respectively). The spatial genetic structure was more pronounced in fallow than in forest where adults showed no spatial structuring. In conclusion, despite the huge influence of human activity on the life cycle of
<i>Vitellaria paradoxa</i>
growing in parkland systems, the impact on the pattern of genetic variation at microsatellite loci appears rather limited, possibly due to the buffering effect of extensive gene flow between unmanaged and managed populations.</p>
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<title>Temporal and spatial genetic structure in Vitellaria paradoxa (shea tree) in an agroforestry system in southern Mali</title>
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<title>WEAK IMPACT OF PARKLAND IN SHEA TREE DIVERSITY</title>
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<title>Temporal and spatial genetic structure in Vitellaria paradoxa (shea tree) in an agroforestry system in southern Mali</title>
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<namePart type="family">Allaye Kelly</namePart>
<affiliation>Institut d’Economie Rurale, Programme Ressources Forestières Centre Régional de la Recherche Agronomique de Sikasso, Sikasso, Mali,</affiliation>
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<name type="personal">
<namePart type="given">Olivier</namePart>
<namePart type="family">Hardy</namePart>
<affiliation>Laboratoire de Génétique Evolutive et d’Ecologie vegétale, Université Libre de Bruxelles, Bruxelles, Belgium,</affiliation>
<role>
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<name type="personal">
<namePart type="given">Jean‐Marc</namePart>
<namePart type="family">Bouvet</namePart>
<affiliation>Cirad–Forêt, Campus International de Baillarguet, TA 10C, BP 5035, 34398 Montpellier, cédex, France</affiliation>
<affiliation>E-mail: jean‐marc.bouvet@cirad.fr</affiliation>
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<dateIssued encoding="w3cdtf">2004-05</dateIssued>
<edition>Received 15 September 2003; revision received 12 January 2004; accepted 12 January 2004</edition>
<copyrightDate encoding="w3cdtf">2004</copyrightDate>
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<abstract lang="en">Ten microsatellite loci were used to investigate the impact of human activity on the spatial and temporal genetic structure of Vitellaria paradoxa (Sapotaceae), a parkland tree species in agroforestry systems in southern Mali. Two stands (forest and fallow) and three cohorts (adults, juveniles and natural regeneration) in each stand were studied to: (i) compare their levels of genetic diversity (gene diversity, HE; allelic richness, Rs; and inbreeding, FIS); (ii) assess their genetic differentiation (FST); and (iii) compare their levels of spatial genetic structuring. Gene diversity parameters did not vary substantially among stands or cohorts, and tests for bottleneck events were nonsignificant. The inbreeding coefficients were not significantly different from zero in most cases (FIS = −0.025 in forest and 0.045 in fallow), suggesting that the species is probably outbreeding. There was a weak decrease in FIS with age, suggesting inbreeding depression. Differentiation of stands within each cohort was weak (FST = 0.026, 0.0005, 0.010 for adults, juveniles and regeneration, respectively), suggesting extensive gene flow. Cohorts within each stand were little differentiated (FST = −0.001 and 0.001 in forest and fallow, respectively). The spatial genetic structure was more pronounced in fallow than in forest where adults showed no spatial structuring. In conclusion, despite the huge influence of human activity on the life cycle of Vitellaria paradoxa growing in parkland systems, the impact on the pattern of genetic variation at microsatellite loci appears rather limited, possibly due to the buffering effect of extensive gene flow between unmanaged and managed populations.</abstract>
<subject lang="en">
<genre>keywords</genre>
<topic>forest tree</topic>
<topic>gene flow</topic>
<topic>human impact</topic>
<topic>inbreeding coefficient</topic>
<topic>kinship coefficient</topic>
<topic>microsatellite</topic>
</subject>
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<title>Molecular Ecology</title>
</titleInfo>
<genre type="journal">journal</genre>
<identifier type="ISSN">0962-1083</identifier>
<identifier type="eISSN">1365-294X</identifier>
<identifier type="DOI">10.1111/(ISSN)1365-294X</identifier>
<identifier type="PublisherID">MEC</identifier>
<part>
<date>2004</date>
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<caption>vol.</caption>
<number>13</number>
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<detail type="issue">
<caption>no.</caption>
<number>5</number>
</detail>
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<start>1231</start>
<end>1240</end>
<total>10</total>
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