Full genomic analysis of new variant rabbit hemorrhagic disease virus revealed multiple recombination events.
Identifieur interne : 002C16 ( PubMed/Curation ); précédent : 002C15; suivant : 002C17Full genomic analysis of new variant rabbit hemorrhagic disease virus revealed multiple recombination events.
Auteurs : Ana M. Lopes [France] ; Kevin P. Dalton [Espagne] ; Maria J. Magalhães [Portugal] ; Francisco Parra [Espagne] ; Pedro J. Esteves [Portugal] ; Edward C. Holmes [Australie] ; Joana Abrantes [Portugal]Source :
- The Journal of general virology [ 1465-2099 ] ; 2015.
Descripteurs français
- KwdFr :
- ARN viral (génétique), Analyse de regroupements, Analyse de séquence d'ADN, Animaux, Chine, Données de séquences moléculaires, Génome viral, Lapins, Phylogénie, Recombinaison génétique, Similitude de séquences, Virus de la maladie hémorragique du lapin (génétique), Virus de la maladie hémorragique du lapin (isolement et purification), Évolution moléculaire.
- MESH :
- génétique : ARN viral, Virus de la maladie hémorragique du lapin.
- isolement et purification : Virus de la maladie hémorragique du lapin.
- Analyse de regroupements, Analyse de séquence d'ADN, Animaux, Chine, Données de séquences moléculaires, Génome viral, Lapins, Phylogénie, Recombinaison génétique, Similitude de séquences, Évolution moléculaire.
- Wicri :
- geographic : République populaire de Chine.
English descriptors
- KwdEn :
- Animals, China, Cluster Analysis, Evolution, Molecular, Genome, Viral, Hemorrhagic Disease Virus, Rabbit (genetics), Hemorrhagic Disease Virus, Rabbit (isolation & purification), Molecular Sequence Data, Phylogeny, RNA, Viral (genetics), Rabbits, Recombination, Genetic, Sequence Analysis, DNA, Sequence Homology.
- MESH :
- chemical , genetics : RNA, Viral.
- geographic : China.
- genetics : Hemorrhagic Disease Virus, Rabbit.
- isolation & purification : Hemorrhagic Disease Virus, Rabbit.
- Animals, Cluster Analysis, Evolution, Molecular, Genome, Viral, Molecular Sequence Data, Phylogeny, Rabbits, Recombination, Genetic, Sequence Analysis, DNA, Sequence Homology.
Abstract
Rabbit hemorrhagic disease virus (RHDV), a Lagovirus of the family Caliciviridae, causes rabbit hemorrhagic disease (RHD) in the European rabbit (Oryctolagus cuniculus). The disease was first documented in 1984 in China and rapidly spread worldwide. In 2010, a new RHDV variant emerged, tentatively classified as 'RHDVb'. RHDVb is characterized by affecting vaccinated rabbits and those <2 months old, and is genetically distinct (~20 %) from older strains. To determine the evolution of RHDV, including the new variant, we generated 28 full-genome sequences from samples collected between 1994 and 2014. Phylogenetic analysis of the gene encoding the major capsid protein, VP60, indicated that all viruses sampled from 2012 to 2014 were RHDVb. Multiple recombination events were detected in the more recent RHDVb genomes, with a single major breakpoint located in the 5' region of VP60. This breakpoint divides the genome into two regions: one that encodes the non-structural proteins and another that encodes the major and minor structural proteins, VP60 and VP10, respectively. Additional phylogenetic analysis of each region revealed two types of recombinants with distinct genomic backgrounds. Recombinants always include the structural proteins of RHDVb, with non-structural proteins from non-pathogenic lagoviruses or from pathogenic genogroup 1 strains. Our results show that in contrast to the evolutionary history of older RHDV strains, recombination plays an important role in generating diversity in the newly emerged RHDVb.
DOI: 10.1099/vir.0.000070
PubMed: 25626685
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<term>Hemorrhagic Disease Virus, Rabbit (genetics)</term>
<term>Hemorrhagic Disease Virus, Rabbit (isolation & purification)</term>
<term>Molecular Sequence Data</term>
<term>Phylogeny</term>
<term>RNA, Viral (genetics)</term>
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<term>Recombination, Genetic</term>
<term>Sequence Analysis, DNA</term>
<term>Sequence Homology</term>
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<term>Analyse de regroupements</term>
<term>Analyse de séquence d'ADN</term>
<term>Animaux</term>
<term>Chine</term>
<term>Données de séquences moléculaires</term>
<term>Génome viral</term>
<term>Lapins</term>
<term>Phylogénie</term>
<term>Recombinaison génétique</term>
<term>Similitude de séquences</term>
<term>Virus de la maladie hémorragique du lapin (génétique)</term>
<term>Virus de la maladie hémorragique du lapin (isolement et purification)</term>
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<term>Cluster Analysis</term>
<term>Evolution, Molecular</term>
<term>Genome, Viral</term>
<term>Molecular Sequence Data</term>
<term>Phylogeny</term>
<term>Rabbits</term>
<term>Recombination, Genetic</term>
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<term>Chine</term>
<term>Données de séquences moléculaires</term>
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<front><div type="abstract" xml:lang="en">Rabbit hemorrhagic disease virus (RHDV), a Lagovirus of the family Caliciviridae, causes rabbit hemorrhagic disease (RHD) in the European rabbit (Oryctolagus cuniculus). The disease was first documented in 1984 in China and rapidly spread worldwide. In 2010, a new RHDV variant emerged, tentatively classified as 'RHDVb'. RHDVb is characterized by affecting vaccinated rabbits and those <2 months old, and is genetically distinct (~20 %) from older strains. To determine the evolution of RHDV, including the new variant, we generated 28 full-genome sequences from samples collected between 1994 and 2014. Phylogenetic analysis of the gene encoding the major capsid protein, VP60, indicated that all viruses sampled from 2012 to 2014 were RHDVb. Multiple recombination events were detected in the more recent RHDVb genomes, with a single major breakpoint located in the 5' region of VP60. This breakpoint divides the genome into two regions: one that encodes the non-structural proteins and another that encodes the major and minor structural proteins, VP60 and VP10, respectively. Additional phylogenetic analysis of each region revealed two types of recombinants with distinct genomic backgrounds. Recombinants always include the structural proteins of RHDVb, with non-structural proteins from non-pathogenic lagoviruses or from pathogenic genogroup 1 strains. Our results show that in contrast to the evolutionary history of older RHDV strains, recombination plays an important role in generating diversity in the newly emerged RHDVb.</div>
</front>
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<Abstract><AbstractText>Rabbit hemorrhagic disease virus (RHDV), a Lagovirus of the family Caliciviridae, causes rabbit hemorrhagic disease (RHD) in the European rabbit (Oryctolagus cuniculus). The disease was first documented in 1984 in China and rapidly spread worldwide. In 2010, a new RHDV variant emerged, tentatively classified as 'RHDVb'. RHDVb is characterized by affecting vaccinated rabbits and those <2 months old, and is genetically distinct (~20 %) from older strains. To determine the evolution of RHDV, including the new variant, we generated 28 full-genome sequences from samples collected between 1994 and 2014. Phylogenetic analysis of the gene encoding the major capsid protein, VP60, indicated that all viruses sampled from 2012 to 2014 were RHDVb. Multiple recombination events were detected in the more recent RHDVb genomes, with a single major breakpoint located in the 5' region of VP60. This breakpoint divides the genome into two regions: one that encodes the non-structural proteins and another that encodes the major and minor structural proteins, VP60 and VP10, respectively. Additional phylogenetic analysis of each region revealed two types of recombinants with distinct genomic backgrounds. Recombinants always include the structural proteins of RHDVb, with non-structural proteins from non-pathogenic lagoviruses or from pathogenic genogroup 1 strains. Our results show that in contrast to the evolutionary history of older RHDV strains, recombination plays an important role in generating diversity in the newly emerged RHDVb.</AbstractText>
<CopyrightInformation>© 2015 The Authors.</CopyrightInformation>
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<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Lopes</LastName>
<ForeName>Ana M</ForeName>
<Initials>AM</Initials>
<AffiliationInfo><Affiliation>CIBIO, InBIO - Research Network in Biodiversity and Evolutionary Biology, Universidade do Porto, Campus de Vairão, Rua Padre Armando Quintas, 4485-661 Vairão, Portugal Departamento de Biologia, Faculdade de Ciências da Universidade do Porto, Porto, Portugal INSERM, UMR892, Université de Nantes, Nantes, France.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Dalton</LastName>
<ForeName>Kevin P</ForeName>
<Initials>KP</Initials>
<AffiliationInfo><Affiliation>Instituto Universitario de Biotecnología de Asturias, Departamento de Bioquímica y Biología Molecular, Universidad de Oviedo, Oviedo, Spain.</Affiliation>
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<AffiliationInfo><Affiliation>CIBIO, InBIO - Research Network in Biodiversity and Evolutionary Biology, Universidade do Porto, Campus de Vairão, Rua Padre Armando Quintas, 4485-661 Vairão, Portugal jabrantes@cibio.up.pt.</Affiliation>
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