Whole Genome Re-Sequencing Identifies a Quantitative Trait Locus Repressing Carbon Reserve Accumulation during Optimal Growth in Chlamydomonas reinhardtii.
Identifieur interne : 001E36 ( PubMed/Curation ); précédent : 001E35; suivant : 001E37Whole Genome Re-Sequencing Identifies a Quantitative Trait Locus Repressing Carbon Reserve Accumulation during Optimal Growth in Chlamydomonas reinhardtii.
Auteurs : Hugh Douglas Goold [France] ; Hoa Mai Nguyen [France] ; Fantao Kong [France] ; Audrey Beyly-Adriano [France] ; Bertrand Légeret [France] ; Emmanuelle Billon [France] ; Stéphan Cuiné [France] ; Fred Beisson [France] ; Gilles Peltier [France] ; Yonghua Li-Beisson [France]Source :
- Scientific reports [ 2045-2322 ] ; 2016.
Abstract
Microalgae have emerged as a promising source for biofuel production. Massive oil and starch accumulation in microalgae is possible, but occurs mostly when biomass growth is impaired. The molecular networks underlying the negative correlation between growth and reserve formation are not known. Thus isolation of strains capable of accumulating carbon reserves during optimal growth would be highly desirable. To this end, we screened an insertional mutant library of Chlamydomonas reinhardtii for alterations in oil content. A mutant accumulating five times more oil and twice more starch than wild-type during optimal growth was isolated and named constitutive oil accumulator 1 (coa1). Growth in photobioreactors under highly controlled conditions revealed that the increase in oil and starch content in coa1 was dependent on light intensity. Genetic analysis and DNA hybridization pointed to a single insertional event responsible for the phenotype. Whole genome re-sequencing identified in coa1 a >200 kb deletion on chromosome 14 containing 41 genes. This study demonstrates that, 1), the generation of algal strains accumulating higher reserve amount without compromising biomass accumulation is feasible; 2), light is an important parameter in phenotypic analysis; and 3), a chromosomal region (Quantitative Trait Locus) acts as suppressor of carbon reserve accumulation during optimal growth.
DOI: 10.1038/srep25209
PubMed: 27141848
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uniqKey="Goold H" first="Hugh Douglas" last="Goold">Hugh Douglas Goold</name><affiliation wicri:level="1"><nlm:affiliation>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108</wicri:regionArea></affiliation></author><author><name sortKey="Nguyen, Hoa Mai" sort="Nguyen, Hoa Mai" uniqKey="Nguyen H" first="Hoa Mai" last="Nguyen">Hoa Mai Nguyen</name><affiliation wicri:level="1"><nlm:affiliation>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108</wicri:regionArea></affiliation></author><author><name sortKey="Kong, Fantao" sort="Kong, Fantao" uniqKey="Kong F" first="Fantao" last="Kong">Fantao Kong</name><affiliation wicri:level="1"><nlm:affiliation>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108</wicri:regionArea></affiliation></author><author><name sortKey="Beyly Adriano, Audrey" sort="Beyly Adriano, Audrey" uniqKey="Beyly Adriano A" first="Audrey" last="Beyly-Adriano">Audrey Beyly-Adriano</name><affiliation wicri:level="1"><nlm:affiliation>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108</wicri:regionArea></affiliation></author><author><name sortKey="Legeret, Bertrand" sort="Legeret, Bertrand" uniqKey="Legeret B" first="Bertrand" last="Légeret">Bertrand Légeret</name><affiliation wicri:level="1"><nlm:affiliation>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108</wicri:regionArea></affiliation></author><author><name sortKey="Billon, Emmanuelle" sort="Billon, Emmanuelle" uniqKey="Billon E" first="Emmanuelle" last="Billon">Emmanuelle Billon</name><affiliation wicri:level="1"><nlm:affiliation>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108</wicri:regionArea></affiliation></author><author><name sortKey="Cuine, Stephan" sort="Cuine, Stephan" uniqKey="Cuine S" first="Stéphan" last="Cuiné">Stéphan Cuiné</name><affiliation wicri:level="1"><nlm:affiliation>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108</wicri:regionArea></affiliation></author><author><name sortKey="Beisson, Fred" sort="Beisson, Fred" uniqKey="Beisson F" first="Fred" last="Beisson">Fred Beisson</name><affiliation wicri:level="1"><nlm:affiliation>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108</wicri:regionArea></affiliation></author><author><name sortKey="Peltier, Gilles" sort="Peltier, Gilles" uniqKey="Peltier G" first="Gilles" last="Peltier">Gilles Peltier</name><affiliation wicri:level="1"><nlm:affiliation>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108</wicri:regionArea></affiliation></author><author><name sortKey="Li Beisson, Yonghua" sort="Li Beisson, Yonghua" uniqKey="Li Beisson Y" first="Yonghua" last="Li-Beisson">Yonghua Li-Beisson</name><affiliation wicri:level="1"><nlm:affiliation>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108</wicri:regionArea></affiliation></author></analytic><series><title level="j">Scientific reports</title><idno type="eISSN">2045-2322</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Microalgae have emerged as a promising source for biofuel production. Massive oil and starch accumulation in microalgae is possible, but occurs mostly when biomass growth is impaired. The molecular networks underlying the negative correlation between growth and reserve formation are not known. Thus isolation of strains capable of accumulating carbon reserves during optimal growth would be highly desirable. To this end, we screened an insertional mutant library of Chlamydomonas reinhardtii for alterations in oil content. A mutant accumulating five times more oil and twice more starch than wild-type during optimal growth was isolated and named constitutive oil accumulator 1 (coa1). Growth in photobioreactors under highly controlled conditions revealed that the increase in oil and starch content in coa1 was dependent on light intensity. Genetic analysis and DNA hybridization pointed to a single insertional event responsible for the phenotype. Whole genome re-sequencing identified in coa1 a >200 kb deletion on chromosome 14 containing 41 genes. This study demonstrates that, 1), the generation of algal strains accumulating higher reserve amount without compromising biomass accumulation is feasible; 2), light is an important parameter in phenotypic analysis; and 3), a chromosomal region (Quantitative Trait Locus) acts as suppressor of carbon reserve accumulation during optimal growth.</div></front></TEI><pubmed><MedlineCitation Status="In-Process" Owner="NLM"><PMID Version="1">27141848</PMID><DateCreated><Year>2016</Year><Month>05</Month><Day>04</Day></DateCreated><DateRevised><Year>2017</Year><Month>07</Month><Day>25</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2045-2322</ISSN><JournalIssue CitedMedium="Internet"><Volume>6</Volume><PubDate><Year>2016</Year><Month>05</Month><Day>04</Day></PubDate></JournalIssue><Title>Scientific reports</Title><ISOAbbreviation>Sci Rep</ISOAbbreviation></Journal><ArticleTitle>Whole Genome Re-Sequencing Identifies a Quantitative Trait Locus Repressing Carbon Reserve Accumulation during Optimal Growth in Chlamydomonas reinhardtii.</ArticleTitle><Pagination><MedlinePgn>25209</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/srep25209</ELocationID><Abstract><AbstractText>Microalgae have emerged as a promising source for biofuel production. Massive oil and starch accumulation in microalgae is possible, but occurs mostly when biomass growth is impaired. The molecular networks underlying the negative correlation between growth and reserve formation are not known. Thus isolation of strains capable of accumulating carbon reserves during optimal growth would be highly desirable. To this end, we screened an insertional mutant library of Chlamydomonas reinhardtii for alterations in oil content. A mutant accumulating five times more oil and twice more starch than wild-type during optimal growth was isolated and named constitutive oil accumulator 1 (coa1). Growth in photobioreactors under highly controlled conditions revealed that the increase in oil and starch content in coa1 was dependent on light intensity. Genetic analysis and DNA hybridization pointed to a single insertional event responsible for the phenotype. Whole genome re-sequencing identified in coa1 a >200 kb deletion on chromosome 14 containing 41 genes. This study demonstrates that, 1), the generation of algal strains accumulating higher reserve amount without compromising biomass accumulation is feasible; 2), light is an important parameter in phenotypic analysis; and 3), a chromosomal region (Quantitative Trait Locus) acts as suppressor of carbon reserve accumulation during optimal growth.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Goold</LastName><ForeName>Hugh Douglas</ForeName><Initials>HD</Initials><AffiliationInfo><Affiliation>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>CNRS, UMR 7265 Biol Veget &Microbiol Environ, Saint-Paul-lez-Durance, 13108, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Aix Marseille Université, BVME UMR7265, Marseille, 13284, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Faculty of Agriculture and the Environment, University of Sydney, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nguyen</LastName><ForeName>Hoa Mai</ForeName><Initials>HM</Initials><AffiliationInfo><Affiliation>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>CNRS, UMR 7265 Biol Veget &Microbiol Environ, Saint-Paul-lez-Durance, 13108, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Aix Marseille Université, BVME UMR7265, Marseille, 13284, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kong</LastName><ForeName>Fantao</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>CNRS, UMR 7265 Biol Veget &Microbiol Environ, Saint-Paul-lez-Durance, 13108, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Aix Marseille Université, BVME UMR7265, Marseille, 13284, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Beyly-Adriano</LastName><ForeName>Audrey</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>CNRS, UMR 7265 Biol Veget &Microbiol Environ, Saint-Paul-lez-Durance, 13108, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Aix Marseille Université, BVME UMR7265, Marseille, 13284, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Légeret</LastName><ForeName>Bertrand</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>CNRS, UMR 7265 Biol Veget &Microbiol Environ, Saint-Paul-lez-Durance, 13108, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Aix Marseille Université, BVME UMR7265, Marseille, 13284, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Billon</LastName><ForeName>Emmanuelle</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>CNRS, UMR 7265 Biol Veget &Microbiol Environ, Saint-Paul-lez-Durance, 13108, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Aix Marseille Université, BVME UMR7265, Marseille, 13284, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cuiné</LastName><ForeName>Stéphan</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>CNRS, UMR 7265 Biol Veget &Microbiol Environ, Saint-Paul-lez-Durance, 13108, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Aix Marseille Université, BVME UMR7265, Marseille, 13284, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Beisson</LastName><ForeName>Fred</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>CNRS, UMR 7265 Biol Veget &Microbiol Environ, Saint-Paul-lez-Durance, 13108, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Aix Marseille Université, BVME UMR7265, Marseille, 13284, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Peltier</LastName><ForeName>Gilles</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>CNRS, UMR 7265 Biol Veget &Microbiol Environ, Saint-Paul-lez-Durance, 13108, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Aix Marseille Université, BVME UMR7265, Marseille, 13284, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li-Beisson</LastName><ForeName>Yonghua</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>CEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>CNRS, UMR 7265 Biol Veget &Microbiol Environ, Saint-Paul-lez-Durance, 13108, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Aix Marseille Université, BVME UMR7265, Marseille, 13284, France.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>05</Month><Day>04</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Sci Rep</MedlineTA><NlmUniqueID>101563288</NlmUniqueID><ISSNLinking>2045-2322</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><CommentsCorrectionsList><CommentsCorrections RefType="Cites"><RefSource>Plant J. 2015 May;82(3):504-22</RefSource><PMID Version="1">25660108</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Plant Cell. 2014 Nov;26(11):4270-97</RefSource><PMID Version="1">25415976</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Biotechnol Bioeng. 2011 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Version="1">15665251</PMID></CommentsCorrections></CommentsCorrectionsList><OtherID Source="NLM">PMC4855234</OtherID></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2016</Year><Month>01</Month><Day>11</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2016</Year><Month>04</Month><Day>13</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2016</Year><Month>5</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2016</Year><Month>5</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2016</Year><Month>5</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">27141848</ArticleId><ArticleId IdType="pii">srep25209</ArticleId><ArticleId IdType="doi">10.1038/srep25209</ArticleId><ArticleId 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