Quantitative trait loci for yield and grain plumpness relative to maturity in three populations of barley (Hordeum vulgare L.) grown in a low rain-fall environment.
Identifieur interne : 000B81 ( PubMed/Curation ); précédent : 000B80; suivant : 000B82Quantitative trait loci for yield and grain plumpness relative to maturity in three populations of barley (Hordeum vulgare L.) grown in a low rain-fall environment.
Auteurs : Bulti Tesso Obsa [Australie] ; Jason Eglinton [Australie] ; Stewart Coventry [Australie] ; Timothy March [Australie] ; Maxime Guillaume [France] ; Thanh Phuoc Le [Viêt Nam] ; Matthew Hayden [Australie] ; Peter Langridge [Australie] ; Delphine Fleury [Australie]Source :
- PloS one [ 1932-6203 ] ; 2017.
Descripteurs français
- KwdFr :
- Australie, Cartographie chromosomique, Grains comestibles (croissance et développement), Grains comestibles (génétique), Hordeum (croissance et développement), Hordeum (génétique), Liaison génétique, Locus de caractère quantitatif, Phénotype, Pluie, Polymorphisme de nucléotide simple, Protéines végétales (génétique), Sécheresses.
- MESH :
- croissance et développement : Grains comestibles, Hordeum.
- génétique : Grains comestibles, Hordeum, Protéines végétales.
- Australie, Cartographie chromosomique, Liaison génétique, Locus de caractère quantitatif, Phénotype, Pluie, Polymorphisme de nucléotide simple, Sécheresses.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : Plant Proteins.
- genetics : Edible Grain, Hordeum.
- growth & development : Edible Grain, Hordeum.
- Australia, Chromosome Mapping, Droughts, Genetic Linkage, Phenotype, Polymorphism, Single Nucleotide, Quantitative Trait Loci, Rain.
Abstract
Identifying yield and grain plumpness QTL that are independent of developmental variation or phenology is of paramount importance for developing widely adapted and stable varieties through the application of marker assisted selection. The current study was designed to dissect the genetic basis of yield performance and grain plumpness in southern Australia using three doubled haploid (DH) populations developed from crosses between adapted parents that are similar in maturity and overall plant development. Three interconnected genetic populations, Commander x Fleet (CF), Commander x WI4304 (CW), and Fleet x WI4304 (FW) developed from crossing of Australian elite barley genotypes, were used to map QTL controlling yield and grain plumpness. QTL for grain plumpness and yield were analysed using genetic linkage maps made of genotyping-by-sequencing markers and major phenology genes, and field trials at three drought prone environments for two growing seasons. Seventeen QTL were detected for grain plumpness. Eighteen yield QTL explaining from 1.2% to 25.0% of the phenotypic variation were found across populations and environments. Significant QTL x environment interaction was observed for all grain plumpness and yield QTL, except QPlum.FW-4H.1 and QYld.FW-2H.1. Unlike previous yield QTL studies in barley, none of the major developmental genes, including Ppd-H1, Vrn-H1, Vrn-H2 and Vrn-H3, that drive barley adaption significantly affected grain plumpness and yield here. Twenty-two QTL controlled yield or grain plumpness independently of known maturity QTL or genes. Adjustment for maturity effects through co-variance analysis had no major effect on these yield QTL indicating that they control yield per se.
DOI: 10.1371/journal.pone.0178111
PubMed: 28542571
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Quantitative trait loci for yield and grain plumpness relative to maturity in three populations of barley (Hordeum vulgare L.) grown in a low rain-fall environment.</title><author><name sortKey="Obsa, Bulti Tesso" sort="Obsa, Bulti Tesso" uniqKey="Obsa B" first="Bulti Tesso" last="Obsa">Bulti Tesso Obsa</name><affiliation wicri:level="1"><nlm:affiliation>Australian Centre for Plant Functional Genomics, School of Agriculture, Food and Wine, Waite Research Institute, The University of Adelaide, Glen Osmond, South Australia, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Centre for Plant Functional Genomics, School of Agriculture, Food and Wine, Waite Research Institute, The University of Adelaide, Glen Osmond, South Australia</wicri:regionArea></affiliation></author><author><name sortKey="Eglinton, Jason" sort="Eglinton, Jason" uniqKey="Eglinton J" first="Jason" 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xml:lang="fr"><term>Australie</term><term>Cartographie chromosomique</term><term>Grains comestibles (croissance et développement)</term><term>Grains comestibles (génétique)</term><term>Hordeum (croissance et développement)</term><term>Hordeum (génétique)</term><term>Liaison génétique</term><term>Locus de caractère quantitatif</term><term>Phénotype</term><term>Pluie</term><term>Polymorphisme de nucléotide simple</term><term>Protéines végétales (génétique)</term><term>Sécheresses</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Plant Proteins</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Grains comestibles</term><term>Hordeum</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Edible Grain</term><term>Hordeum</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Edible Grain</term><term>Hordeum</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Grains comestibles</term><term>Hordeum</term><term>Protéines végétales</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Australia</term><term>Chromosome Mapping</term><term>Droughts</term><term>Genetic Linkage</term><term>Phenotype</term><term>Polymorphism, Single Nucleotide</term><term>Quantitative Trait Loci</term><term>Rain</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Australie</term><term>Cartographie chromosomique</term><term>Liaison génétique</term><term>Locus de caractère quantitatif</term><term>Phénotype</term><term>Pluie</term><term>Polymorphisme de nucléotide simple</term><term>Sécheresses</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Identifying yield and grain plumpness QTL that are independent of developmental variation or phenology is of paramount importance for developing widely adapted and stable varieties through the application of marker assisted selection. The current study was designed to dissect the genetic basis of yield performance and grain plumpness in southern Australia using three doubled haploid (DH) populations developed from crosses between adapted parents that are similar in maturity and overall plant development. Three interconnected genetic populations, Commander x Fleet (CF), Commander x WI4304 (CW), and Fleet x WI4304 (FW) developed from crossing of Australian elite barley genotypes, were used to map QTL controlling yield and grain plumpness. QTL for grain plumpness and yield were analysed using genetic linkage maps made of genotyping-by-sequencing markers and major phenology genes, and field trials at three drought prone environments for two growing seasons. Seventeen QTL were detected for grain plumpness. Eighteen yield QTL explaining from 1.2% to 25.0% of the phenotypic variation were found across populations and environments. Significant QTL x environment interaction was observed for all grain plumpness and yield QTL, except QPlum.FW-4H.1 and QYld.FW-2H.1. Unlike previous yield QTL studies in barley, none of the major developmental genes, including Ppd-H1, Vrn-H1, Vrn-H2 and Vrn-H3, that drive barley adaption significantly affected grain plumpness and yield here. Twenty-two QTL controlled yield or grain plumpness independently of known maturity QTL or genes. Adjustment for maturity effects through co-variance analysis had no major effect on these yield QTL indicating that they control yield per se.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">28542571</PMID><DateCreated><Year>2017</Year><Month>05</Month><Day>25</Day></DateCreated><DateCompleted><Year>2017</Year><Month>09</Month><Day>18</Day></DateCompleted><DateRevised><Year>2017</Year><Month>09</Month><Day>18</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">1932-6203</ISSN><JournalIssue CitedMedium="Internet"><Volume>12</Volume><Issue>5</Issue><PubDate><Year>2017</Year></PubDate></JournalIssue><Title>PloS one</Title><ISOAbbreviation>PLoS ONE</ISOAbbreviation></Journal><ArticleTitle>Quantitative trait loci for yield and grain plumpness relative to maturity in three populations of barley (Hordeum vulgare L.) grown in a low rain-fall environment.</ArticleTitle><Pagination><MedlinePgn>e0178111</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.pone.0178111</ELocationID><Abstract><AbstractText>Identifying yield and grain plumpness QTL that are independent of developmental variation or phenology is of paramount importance for developing widely adapted and stable varieties through the application of marker assisted selection. The current study was designed to dissect the genetic basis of yield performance and grain plumpness in southern Australia using three doubled haploid (DH) populations developed from crosses between adapted parents that are similar in maturity and overall plant development. Three interconnected genetic populations, Commander x Fleet (CF), Commander x WI4304 (CW), and Fleet x WI4304 (FW) developed from crossing of Australian elite barley genotypes, were used to map QTL controlling yield and grain plumpness. QTL for grain plumpness and yield were analysed using genetic linkage maps made of genotyping-by-sequencing markers and major phenology genes, and field trials at three drought prone environments for two growing seasons. Seventeen QTL were detected for grain plumpness. Eighteen yield QTL explaining from 1.2% to 25.0% of the phenotypic variation were found across populations and environments. Significant QTL x environment interaction was observed for all grain plumpness and yield QTL, except QPlum.FW-4H.1 and QYld.FW-2H.1. Unlike previous yield QTL studies in barley, none of the major developmental genes, including Ppd-H1, Vrn-H1, Vrn-H2 and Vrn-H3, that drive barley adaption significantly affected grain plumpness and yield here. Twenty-two QTL controlled yield or grain plumpness independently of known maturity QTL or genes. Adjustment for maturity effects through co-variance analysis had no major effect on these yield QTL indicating that they control yield per se.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Obsa</LastName><ForeName>Bulti Tesso</ForeName><Initials>BT</Initials><AffiliationInfo><Affiliation>Australian Centre for Plant Functional Genomics, School of Agriculture, Food and Wine, Waite Research Institute, The University of Adelaide, Glen Osmond, South Australia, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Eglinton</LastName><ForeName>Jason</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>School of Agriculture, Food and Wine, Waite Research Institute, The University of Adelaide, Glen Osmond, South Australia, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Coventry</LastName><ForeName>Stewart</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>School of Agriculture, Food and Wine, Waite Research Institute, The University of Adelaide, Glen Osmond, South Australia, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>March</LastName><ForeName>Timothy</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>School of Agriculture, Food and Wine, Waite Research Institute, The University of Adelaide, Glen Osmond, South Australia, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Guillaume</LastName><ForeName>Maxime</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Montpellier SupAgro, Montpellier, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Le</LastName><ForeName>Thanh Phuoc</ForeName><Initials>TP</Initials><AffiliationInfo><Affiliation>Department of Plant Protection, College of Agriculture & Applied Biology, Can Tho University, Can Tho, Vietnam.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hayden</LastName><ForeName>Matthew</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Economic Development, Jobs, Transport and Resources, Agribio, La Trobe University, Bundoora, Victoria, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Langridge</LastName><ForeName>Peter</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Australian Centre for Plant Functional Genomics, School of Agriculture, Food and Wine, Waite Research Institute, The University of Adelaide, Glen Osmond, South Australia, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>School of Agriculture, Food and Wine, Waite Research Institute, The University of Adelaide, Glen Osmond, South Australia, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fleury</LastName><ForeName>Delphine</ForeName><Initials>D</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-7077-4103</Identifier><AffiliationInfo><Affiliation>Australian Centre for Plant Functional Genomics, School of Agriculture, Food and Wine, Waite Research Institute, The University of Adelaide, Glen Osmond, South Australia, Australia.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>05</Month><Day>23</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>PLoS One</MedlineTA><NlmUniqueID>101285081</NlmUniqueID><ISSNLinking>1932-6203</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><CommentsCorrectionsList><CommentsCorrections 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Version="1">25420105</PMID></CommentsCorrections></CommentsCorrectionsList><MeshHeadingList><MeshHeading><DescriptorName UI="D001315" MajorTopicYN="N">Australia</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002874" MajorTopicYN="N">Chromosome Mapping</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D055864" MajorTopicYN="N">Droughts</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002523" MajorTopicYN="N">Edible Grain</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="Y">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008040" MajorTopicYN="N">Genetic Linkage</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001467" MajorTopicYN="N">Hordeum</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="Y">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010641" MajorTopicYN="N">Phenotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020641" MajorTopicYN="N">Polymorphism, Single Nucleotide</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D040641" MajorTopicYN="N">Quantitative Trait Loci</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D011891" MajorTopicYN="Y">Rain</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>01</Month><Day>11</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2017</Year><Month>05</Month><Day>06</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2017</Year><Month>5</Month><Day>26</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2017</Year><Month>5</Month><Day>26</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2017</Year><Month>9</Month><Day>19</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">28542571</ArticleId><ArticleId IdType="doi">10.1371/journal.pone.0178111</ArticleId><ArticleId IdType="pii">PONE-D-17-01296</ArticleId><ArticleId IdType="pmc">PMC5441627</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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