Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture.
Identifieur interne : 000A91 ( PubMed/Curation ); précédent : 000A90; suivant : 000A92Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture.
Auteurs : Daniel J. Macqueen [Royaume-Uni] ; Craig R. Primmer [Finlande] ; Ross D. Houston [Royaume-Uni] ; Barbara F. Nowak [Australie] ; Louis Bernatchez [Canada] ; Steinar Bergseth [Norvège] ; William S. Davidson [Canada] ; Cristian Gallardo-Escárate [Chili] ; Tom Goldammer [Allemagne] ; Yann Guiguen [France] ; Patricia Iturra [Chili] ; James W. Kijas [Australie] ; Ben F. Koop [Canada] ; Sigbj Rn Lien [Norvège] ; Alejandro Maass [Chili] ; Samuel A M. Martin [Royaume-Uni] ; Philip Mcginnity [Irlande (pays)] ; Martin Montecino [Chili] ; Kerry A. Naish [États-Unis] ; Krista M. Nichols [États-Unis] ; Kristinn Lafsson [Islande] ; Stig W. Omholt [Norvège] ; Yniv Palti [États-Unis] ; Graham S. Plastow [Canada] ; Caird E. Rexroad [États-Unis] ; Matthew L. Rise [Canada] ; Rachael J. Ritchie [Canada] ; Simen R. Sandve [Norvège] ; Patricia M. Schulte [Canada] ; Alfredo Tello [Chili] ; Rodrigo Vidal [Chili] ; Jon Olav Vik [Norvège] ; Anna Wargelius [Norvège] ; José Manuel Yá Ez [Chili]Source :
- BMC genomics [ 1471-2164 ] ; 2017.
Abstract
We describe an emerging initiative - the 'Functional Annotation of All Salmonid Genomes' (FAASG), which will leverage the extensive trait diversity that has evolved since a whole genome duplication event in the salmonid ancestor, to develop an integrative understanding of the functional genomic basis of phenotypic variation. The outcomes of FAASG will have diverse applications, ranging from improved understanding of genome evolution, to improving the efficiency and sustainability of aquaculture production, supporting the future of fundamental and applied research in an iconic fish lineage of major societal importance.
DOI: 10.1186/s12864-017-3862-8
PubMed: 28655320
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<author><name sortKey="Bergseth, Steinar" sort="Bergseth, Steinar" uniqKey="Bergseth S" first="Steinar" last="Bergseth">Steinar Bergseth</name>
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<author><name sortKey="Davidson, William S" sort="Davidson, William S" uniqKey="Davidson W" first="William S" last="Davidson">William S. Davidson</name>
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<author><name sortKey="Gallardo Escarate, Cristian" sort="Gallardo Escarate, Cristian" uniqKey="Gallardo Escarate C" first="Cristian" last="Gallardo-Escárate">Cristian Gallardo-Escárate</name>
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<author><name sortKey="Goldammer, Tom" sort="Goldammer, Tom" uniqKey="Goldammer T" first="Tom" last="Goldammer">Tom Goldammer</name>
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<author><name sortKey="Guiguen, Yann" sort="Guiguen, Yann" uniqKey="Guiguen Y" first="Yann" last="Guiguen">Yann Guiguen</name>
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<author><name sortKey="Iturra, Patricia" sort="Iturra, Patricia" uniqKey="Iturra P" first="Patricia" last="Iturra">Patricia Iturra</name>
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<author><name sortKey="Kijas, James W" sort="Kijas, James W" uniqKey="Kijas J" first="James W" last="Kijas">James W. Kijas</name>
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<author><name sortKey="Koop, Ben F" sort="Koop, Ben F" uniqKey="Koop B" first="Ben F" last="Koop">Ben F. Koop</name>
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<author><name sortKey="Lien, Sigbj Rn" sort="Lien, Sigbj Rn" uniqKey="Lien S" first="Sigbj Rn" last="Lien">Sigbj Rn Lien</name>
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<author><name sortKey="Martin, Samuel A M" sort="Martin, Samuel A M" uniqKey="Martin S" first="Samuel A M" last="Martin">Samuel A M. Martin</name>
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<author><name sortKey="Mcginnity, Philip" sort="Mcginnity, Philip" uniqKey="Mcginnity P" first="Philip" last="Mcginnity">Philip Mcginnity</name>
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<author><name sortKey="Montecino, Martin" sort="Montecino, Martin" uniqKey="Montecino M" first="Martin" last="Montecino">Martin Montecino</name>
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<author><name sortKey="Naish, Kerry A" sort="Naish, Kerry A" uniqKey="Naish K" first="Kerry A" last="Naish">Kerry A. Naish</name>
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<author><name sortKey="Nichols, Krista M" sort="Nichols, Krista M" uniqKey="Nichols K" first="Krista M" last="Nichols">Krista M. Nichols</name>
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<author><name sortKey=" Lafsson, Kristinn" sort=" Lafsson, Kristinn" uniqKey=" Lafsson K" first="Kristinn" last=" Lafsson">Kristinn Lafsson</name>
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<author><name sortKey="Palti, Yniv" sort="Palti, Yniv" uniqKey="Palti Y" first="Yniv" last="Palti">Yniv Palti</name>
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<author><name sortKey="Plastow, Graham S" sort="Plastow, Graham S" uniqKey="Plastow G" first="Graham S" last="Plastow">Graham S. Plastow</name>
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<author><name sortKey="Rexroad, Caird E" sort="Rexroad, Caird E" uniqKey="Rexroad C" first="Caird E" last="Rexroad">Caird E. Rexroad</name>
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<author><name sortKey="Rise, Matthew L" sort="Rise, Matthew L" uniqKey="Rise M" first="Matthew L" last="Rise">Matthew L. Rise</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Ocean Sciences, Memorial University of Newfoundland, 1 Marine Lab Road, St. John's, NL, A1C 5S7, Canada.</nlm:affiliation>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Department of Ocean Sciences, Memorial University of Newfoundland, 1 Marine Lab Road, St. John's, NL, A1C 5S7</wicri:regionArea>
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<author><name sortKey="Ritchie, Rachael J" sort="Ritchie, Rachael J" uniqKey="Ritchie R" first="Rachael J" last="Ritchie">Rachael J. Ritchie</name>
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<author><name sortKey="Sandve, Simen R" sort="Sandve, Simen R" uniqKey="Sandve S" first="Simen R" last="Sandve">Simen R. Sandve</name>
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<country xml:lang="fr">Norvège</country>
<wicri:regionArea>Centre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, NO-1432, Ås</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Schulte, Patricia M" sort="Schulte, Patricia M" uniqKey="Schulte P" first="Patricia M" last="Schulte">Patricia M. Schulte</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Zoology, University of British Columbia, 6270 University Blvd, Vancouver, BC, V6T 1Z4, Canada.</nlm:affiliation>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Department of Zoology, University of British Columbia, 6270 University Blvd, Vancouver, BC, V6T 1Z4</wicri:regionArea>
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<author><name sortKey="Tello, Alfredo" sort="Tello, Alfredo" uniqKey="Tello A" first="Alfredo" last="Tello">Alfredo Tello</name>
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<country xml:lang="fr">Chili</country>
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<author><name sortKey="Vidal, Rodrigo" sort="Vidal, Rodrigo" uniqKey="Vidal R" first="Rodrigo" last="Vidal">Rodrigo Vidal</name>
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<country xml:lang="fr">Chili</country>
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<author><name sortKey="Vik, Jon Olav" sort="Vik, Jon Olav" uniqKey="Vik J" first="Jon Olav" last="Vik">Jon Olav Vik</name>
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<country xml:lang="fr">Norvège</country>
<wicri:regionArea>Centre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, NO-1432, Ås</wicri:regionArea>
</affiliation>
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<author><name sortKey="Wargelius, Anna" sort="Wargelius, Anna" uniqKey="Wargelius A" first="Anna" last="Wargelius">Anna Wargelius</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Marine Research, P.O. Box 1870, Nordnes, NO-5817, Bergen, Norway.</nlm:affiliation>
<country xml:lang="fr">Norvège</country>
<wicri:regionArea>Institute of Marine Research, P.O. Box 1870, Nordnes, NO-5817, Bergen</wicri:regionArea>
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<author><name sortKey="Ya Ez, Jose Manuel" sort="Ya Ez, Jose Manuel" uniqKey="Ya Ez J" first="José Manuel" last="Yá Ez">José Manuel Yá Ez</name>
<affiliation wicri:level="1"><nlm:affiliation>Faculty of Veterinary and Animal Sciences, University of Chile, Av. Santa Rosa 11735, Santiago, Chile & Aquainnovo, Cardonal s/n, Puerto Montt, Chile.</nlm:affiliation>
<country xml:lang="fr">Chili</country>
<wicri:regionArea>Faculty of Veterinary and Animal Sciences, University of Chile, Av. Santa Rosa 11735, Santiago, Chile & Aquainnovo, Cardonal s/n, Puerto Montt</wicri:regionArea>
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<sourceDesc><biblStruct><analytic><title xml:lang="en">Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture.</title>
<author><name sortKey="Macqueen, Daniel J" sort="Macqueen, Daniel J" uniqKey="Macqueen D" first="Daniel J" last="Macqueen">Daniel J. Macqueen</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, AB24 2TZ, UK. daniel.macqueen@abdn.ac.uk.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Institute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, AB24 2TZ</wicri:regionArea>
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<author><name sortKey="Primmer, Craig R" sort="Primmer, Craig R" uniqKey="Primmer C" first="Craig R" last="Primmer">Craig R. Primmer</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Biology, University of Turku, 20014, Turku, Finland. craig.primmer@helsinki.fi.</nlm:affiliation>
<country xml:lang="fr">Finlande</country>
<wicri:regionArea>Department of Biology, University of Turku, 20014, Turku</wicri:regionArea>
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</author>
<author><name sortKey="Houston, Ross D" sort="Houston, Ross D" uniqKey="Houston R" first="Ross D" last="Houston">Ross D. Houston</name>
<affiliation wicri:level="1"><nlm:affiliation>The Roslin Institute and Royal (Dick) School of Veterinary Studies, The University of Edinburgh, Midlothian, EH25 9RG, UK. ross.houston@roslin.ed.ac.uk.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>The Roslin Institute and Royal (Dick) School of Veterinary Studies, The University of Edinburgh, Midlothian, EH25 9RG</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Nowak, Barbara F" sort="Nowak, Barbara F" uniqKey="Nowak B" first="Barbara F" last="Nowak">Barbara F. Nowak</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute for Marine and Antarctic Studies, University of Tasmania, Launceston, TAS, Australia. b.nowak@utas.edu.au.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>Institute for Marine and Antarctic Studies, University of Tasmania, Launceston, TAS</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Bernatchez, Louis" sort="Bernatchez, Louis" uniqKey="Bernatchez L" first="Louis" last="Bernatchez">Louis Bernatchez</name>
<affiliation wicri:level="1"><nlm:affiliation>Département de biologie, Institut de Biologie Intégrative et des Systèmes (IBIS), Université Laval, Québec, G1V 0A6, Canada.</nlm:affiliation>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Département de biologie, Institut de Biologie Intégrative et des Systèmes (IBIS), Université Laval, Québec, G1V 0A6</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Bergseth, Steinar" sort="Bergseth, Steinar" uniqKey="Bergseth S" first="Steinar" last="Bergseth">Steinar Bergseth</name>
<affiliation wicri:level="1"><nlm:affiliation>The Research Council of Norway, Drammensveien 288, P.O. Box 564, NO-1327, Lysaker, Norway.</nlm:affiliation>
<country xml:lang="fr">Norvège</country>
<wicri:regionArea>The Research Council of Norway, Drammensveien 288, P.O. Box 564, NO-1327, Lysaker</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Davidson, William S" sort="Davidson, William S" uniqKey="Davidson W" first="William S" last="Davidson">William S. Davidson</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, V5A 1S6, Canada.</nlm:affiliation>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, V5A 1S6</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Gallardo Escarate, Cristian" sort="Gallardo Escarate, Cristian" uniqKey="Gallardo Escarate C" first="Cristian" last="Gallardo-Escárate">Cristian Gallardo-Escárate</name>
<affiliation wicri:level="1"><nlm:affiliation>Laboratory of Biotechnology and Aquatic Genomics, Interdisciplinary Center for Aquaculture Research, Department of Oceanography, Universidad de Concepción, 4030000, Concepción, Chile.</nlm:affiliation>
<country xml:lang="fr">Chili</country>
<wicri:regionArea>Laboratory of Biotechnology and Aquatic Genomics, Interdisciplinary Center for Aquaculture Research, Department of Oceanography, Universidad de Concepción, 4030000, Concepción</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Goldammer, Tom" sort="Goldammer, Tom" uniqKey="Goldammer T" first="Tom" last="Goldammer">Tom Goldammer</name>
<affiliation wicri:level="1"><nlm:affiliation>Leibniz Institute for Farm Animal Biology, Institute for Genome Biology, Fish Genetics Unit, Wilhelm-Stahl-Allee 2, 18196, Dummerstorf, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Leibniz Institute for Farm Animal Biology, Institute for Genome Biology, Fish Genetics Unit, Wilhelm-Stahl-Allee 2, 18196, Dummerstorf</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Guiguen, Yann" sort="Guiguen, Yann" uniqKey="Guiguen Y" first="Yann" last="Guiguen">Yann Guiguen</name>
<affiliation wicri:level="1"><nlm:affiliation>INRA, UR1037 Fish Physiology and Genomics, Rennes, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>INRA, UR1037 Fish Physiology and Genomics, Rennes</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Iturra, Patricia" sort="Iturra, Patricia" uniqKey="Iturra P" first="Patricia" last="Iturra">Patricia Iturra</name>
<affiliation wicri:level="1"><nlm:affiliation>Human Genetics Program ICBM Faculty of Medicine, University of Chile, Santiago, Chile.</nlm:affiliation>
<country xml:lang="fr">Chili</country>
<wicri:regionArea>Human Genetics Program ICBM Faculty of Medicine, University of Chile, Santiago</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Kijas, James W" sort="Kijas, James W" uniqKey="Kijas J" first="James W" last="Kijas">James W. Kijas</name>
<affiliation wicri:level="1"><nlm:affiliation>CSIRO Agriculture, QLD, St Lucia, 4067, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>CSIRO Agriculture, QLD, St Lucia, 4067</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Koop, Ben F" sort="Koop, Ben F" uniqKey="Koop B" first="Ben F" last="Koop">Ben F. Koop</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Biology, University of Victoria, Victoria, BC, V8W 3N5, Canada.</nlm:affiliation>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Department of Biology, University of Victoria, Victoria, BC, V8W 3N5</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Lien, Sigbj Rn" sort="Lien, Sigbj Rn" uniqKey="Lien S" first="Sigbj Rn" last="Lien">Sigbj Rn Lien</name>
<affiliation wicri:level="1"><nlm:affiliation>Centre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, NO-1432, Ås, Norway.</nlm:affiliation>
<country xml:lang="fr">Norvège</country>
<wicri:regionArea>Centre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, NO-1432, Ås</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Maass, Alejandro" sort="Maass, Alejandro" uniqKey="Maass A" first="Alejandro" last="Maass">Alejandro Maass</name>
<affiliation wicri:level="1"><nlm:affiliation>Center for Mathematical Modelling, Department of Mathematical Engineering, University of Chile, 8370456, Santiago, Chile.</nlm:affiliation>
<country xml:lang="fr">Chili</country>
<wicri:regionArea>Center for Mathematical Modelling, Department of Mathematical Engineering, University of Chile, 8370456, Santiago</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Martin, Samuel A M" sort="Martin, Samuel A M" uniqKey="Martin S" first="Samuel A M" last="Martin">Samuel A M. Martin</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, AB24 2TZ, UK.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Institute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, AB24 2TZ</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Mcginnity, Philip" sort="Mcginnity, Philip" uniqKey="Mcginnity P" first="Philip" last="Mcginnity">Philip Mcginnity</name>
<affiliation wicri:level="1"><nlm:affiliation>School of Biological, Earth and Environmental Sciences, University College Cork, Cork, Ireland.</nlm:affiliation>
<country xml:lang="fr">Irlande (pays)</country>
<wicri:regionArea>School of Biological, Earth and Environmental Sciences, University College Cork, Cork</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Montecino, Martin" sort="Montecino, Martin" uniqKey="Montecino M" first="Martin" last="Montecino">Martin Montecino</name>
<affiliation wicri:level="1"><nlm:affiliation>Center for Biomedical Research, Universidad Andres Bello, 8370146, Santiago, Chile.</nlm:affiliation>
<country xml:lang="fr">Chili</country>
<wicri:regionArea>Center for Biomedical Research, Universidad Andres Bello, 8370146, Santiago</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Naish, Kerry A" sort="Naish, Kerry A" uniqKey="Naish K" first="Kerry A" last="Naish">Kerry A. Naish</name>
<affiliation wicri:level="1"><nlm:affiliation>School of Aquatic and Fishery Sciences, University of Washington, Box 355020, Seattle, WA, 98195, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>School of Aquatic and Fishery Sciences, University of Washington, Box 355020, Seattle, WA, 98195</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Nichols, Krista M" sort="Nichols, Krista M" uniqKey="Nichols K" first="Krista M" last="Nichols">Krista M. Nichols</name>
<affiliation wicri:level="1"><nlm:affiliation>Conservation Biology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, 2725 Montlake Blvd E, Seattle, WA, 98112, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Conservation Biology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, 2725 Montlake Blvd E, Seattle, WA, 98112</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey=" Lafsson, Kristinn" sort=" Lafsson, Kristinn" uniqKey=" Lafsson K" first="Kristinn" last=" Lafsson">Kristinn Lafsson</name>
<affiliation wicri:level="1"><nlm:affiliation>Matis Ltd, Vínlandsleið 12, 113, Reykjavík, Iceland.</nlm:affiliation>
<country xml:lang="fr">Islande</country>
<wicri:regionArea>Matis Ltd, Vínlandsleið 12, 113, Reykjavík</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Omholt, Stig W" sort="Omholt, Stig W" uniqKey="Omholt S" first="Stig W" last="Omholt">Stig W. Omholt</name>
<affiliation wicri:level="1"><nlm:affiliation>Centre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, NO-1432, Ås, Norway.</nlm:affiliation>
<country xml:lang="fr">Norvège</country>
<wicri:regionArea>Centre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, NO-1432, Ås</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Palti, Yniv" sort="Palti, Yniv" uniqKey="Palti Y" first="Yniv" last="Palti">Yniv Palti</name>
<affiliation wicri:level="1"><nlm:affiliation>National Center for Cool and Cold Water Aquaculture, USDA ARS, 11861 Leetown Road, Kearneysville, WV, 25430, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>National Center for Cool and Cold Water Aquaculture, USDA ARS, 11861 Leetown Road, Kearneysville, WV, 25430</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Plastow, Graham S" sort="Plastow, Graham S" uniqKey="Plastow G" first="Graham S" last="Plastow">Graham S. Plastow</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Agricultural, Food, and Nutritional Science, University of Alberta, Edmonton, AB, Canada.</nlm:affiliation>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Department of Agricultural, Food, and Nutritional Science, University of Alberta, Edmonton, AB</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Rexroad, Caird E" sort="Rexroad, Caird E" uniqKey="Rexroad C" first="Caird E" last="Rexroad">Caird E. Rexroad</name>
<affiliation wicri:level="1"><nlm:affiliation>Office of National Programs, USDA ARS, 5601 Sunnyside Avenue, Beltsville, MD, 20705-5148, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Office of National Programs, USDA ARS, 5601 Sunnyside Avenue, Beltsville, MD, 20705-5148</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Rise, Matthew L" sort="Rise, Matthew L" uniqKey="Rise M" first="Matthew L" last="Rise">Matthew L. Rise</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Ocean Sciences, Memorial University of Newfoundland, 1 Marine Lab Road, St. John's, NL, A1C 5S7, Canada.</nlm:affiliation>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Department of Ocean Sciences, Memorial University of Newfoundland, 1 Marine Lab Road, St. John's, NL, A1C 5S7</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Ritchie, Rachael J" sort="Ritchie, Rachael J" uniqKey="Ritchie R" first="Rachael J" last="Ritchie">Rachael J. Ritchie</name>
<affiliation wicri:level="1"><nlm:affiliation>Genome British Columbia, Suite 400 - 575, West 8th Avenue, Vancouver, BC, V5Z 0C4, Canada.</nlm:affiliation>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Genome British Columbia, Suite 400 - 575, West 8th Avenue, Vancouver, BC, V5Z 0C4</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Sandve, Simen R" sort="Sandve, Simen R" uniqKey="Sandve S" first="Simen R" last="Sandve">Simen R. Sandve</name>
<affiliation wicri:level="1"><nlm:affiliation>Centre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, NO-1432, Ås, Norway.</nlm:affiliation>
<country xml:lang="fr">Norvège</country>
<wicri:regionArea>Centre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, NO-1432, Ås</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Schulte, Patricia M" sort="Schulte, Patricia M" uniqKey="Schulte P" first="Patricia M" last="Schulte">Patricia M. Schulte</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Zoology, University of British Columbia, 6270 University Blvd, Vancouver, BC, V6T 1Z4, Canada.</nlm:affiliation>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Department of Zoology, University of British Columbia, 6270 University Blvd, Vancouver, BC, V6T 1Z4</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Tello, Alfredo" sort="Tello, Alfredo" uniqKey="Tello A" first="Alfredo" last="Tello">Alfredo Tello</name>
<affiliation wicri:level="1"><nlm:affiliation>Instituto Tecnológico del Salmón S.A., INTESAL de SalmonChile, Puerto Montt, Chile.</nlm:affiliation>
<country xml:lang="fr">Chili</country>
<wicri:regionArea>Instituto Tecnológico del Salmón S.A., INTESAL de SalmonChile, Puerto Montt</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Vidal, Rodrigo" sort="Vidal, Rodrigo" uniqKey="Vidal R" first="Rodrigo" last="Vidal">Rodrigo Vidal</name>
<affiliation wicri:level="1"><nlm:affiliation>Laboratory of Molecular Ecology, Genomics, and Evolutionary Studies, Department of Biology, University of Santiago, 9170022, Santiago, Chile.</nlm:affiliation>
<country xml:lang="fr">Chili</country>
<wicri:regionArea>Laboratory of Molecular Ecology, Genomics, and Evolutionary Studies, Department of Biology, University of Santiago, 9170022, Santiago</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Vik, Jon Olav" sort="Vik, Jon Olav" uniqKey="Vik J" first="Jon Olav" last="Vik">Jon Olav Vik</name>
<affiliation wicri:level="1"><nlm:affiliation>Centre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, NO-1432, Ås, Norway.</nlm:affiliation>
<country xml:lang="fr">Norvège</country>
<wicri:regionArea>Centre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, NO-1432, Ås</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Wargelius, Anna" sort="Wargelius, Anna" uniqKey="Wargelius A" first="Anna" last="Wargelius">Anna Wargelius</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Marine Research, P.O. Box 1870, Nordnes, NO-5817, Bergen, Norway.</nlm:affiliation>
<country xml:lang="fr">Norvège</country>
<wicri:regionArea>Institute of Marine Research, P.O. Box 1870, Nordnes, NO-5817, Bergen</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Ya Ez, Jose Manuel" sort="Ya Ez, Jose Manuel" uniqKey="Ya Ez J" first="José Manuel" last="Yá Ez">José Manuel Yá Ez</name>
<affiliation wicri:level="1"><nlm:affiliation>Faculty of Veterinary and Animal Sciences, University of Chile, Av. Santa Rosa 11735, Santiago, Chile & Aquainnovo, Cardonal s/n, Puerto Montt, Chile.</nlm:affiliation>
<country xml:lang="fr">Chili</country>
<wicri:regionArea>Faculty of Veterinary and Animal Sciences, University of Chile, Av. Santa Rosa 11735, Santiago, Chile & Aquainnovo, Cardonal s/n, Puerto Montt</wicri:regionArea>
</affiliation>
</author>
</analytic>
<series><title level="j">BMC genomics</title>
<idno type="eISSN">1471-2164</idno>
<imprint><date when="2017" type="published">2017</date>
</imprint>
</series>
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<front><div type="abstract" xml:lang="en">We describe an emerging initiative - the 'Functional Annotation of All Salmonid Genomes' (FAASG), which will leverage the extensive trait diversity that has evolved since a whole genome duplication event in the salmonid ancestor, to develop an integrative understanding of the functional genomic basis of phenotypic variation. The outcomes of FAASG will have diverse applications, ranging from improved understanding of genome evolution, to improving the efficiency and sustainability of aquaculture production, supporting the future of fundamental and applied research in an iconic fish lineage of major societal importance.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="In-Process" Owner="NLM"><PMID Version="1">28655320</PMID>
<DateCreated><Year>2017</Year>
<Month>06</Month>
<Day>28</Day>
</DateCreated>
<DateRevised><Year>2017</Year>
<Month>07</Month>
<Day>14</Day>
</DateRevised>
<Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2164</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>18</Volume>
<Issue>1</Issue>
<PubDate><Year>2017</Year>
<Month>Jun</Month>
<Day>27</Day>
</PubDate>
</JournalIssue>
<Title>BMC genomics</Title>
<ISOAbbreviation>BMC Genomics</ISOAbbreviation>
</Journal>
<ArticleTitle>Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture.</ArticleTitle>
<Pagination><MedlinePgn>484</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1186/s12864-017-3862-8</ELocationID>
<Abstract><AbstractText>We describe an emerging initiative - the 'Functional Annotation of All Salmonid Genomes' (FAASG), which will leverage the extensive trait diversity that has evolved since a whole genome duplication event in the salmonid ancestor, to develop an integrative understanding of the functional genomic basis of phenotypic variation. The outcomes of FAASG will have diverse applications, ranging from improved understanding of genome evolution, to improving the efficiency and sustainability of aquaculture production, supporting the future of fundamental and applied research in an iconic fish lineage of major societal importance.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Macqueen</LastName>
<ForeName>Daniel J</ForeName>
<Initials>DJ</Initials>
<AffiliationInfo><Affiliation>Institute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, AB24 2TZ, UK. daniel.macqueen@abdn.ac.uk.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Primmer</LastName>
<ForeName>Craig R</ForeName>
<Initials>CR</Initials>
<Identifier Source="ORCID">http://orcid.org/0000-0002-3687-8435</Identifier>
<AffiliationInfo><Affiliation>Department of Biology, University of Turku, 20014, Turku, Finland. craig.primmer@helsinki.fi.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Houston</LastName>
<ForeName>Ross D</ForeName>
<Initials>RD</Initials>
<AffiliationInfo><Affiliation>The Roslin Institute and Royal (Dick) School of Veterinary Studies, The University of Edinburgh, Midlothian, EH25 9RG, UK. ross.houston@roslin.ed.ac.uk.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Nowak</LastName>
<ForeName>Barbara F</ForeName>
<Initials>BF</Initials>
<AffiliationInfo><Affiliation>Institute for Marine and Antarctic Studies, University of Tasmania, Launceston, TAS, Australia. b.nowak@utas.edu.au.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Bernatchez</LastName>
<ForeName>Louis</ForeName>
<Initials>L</Initials>
<AffiliationInfo><Affiliation>Département de biologie, Institut de Biologie Intégrative et des Systèmes (IBIS), Université Laval, Québec, G1V 0A6, Canada.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Bergseth</LastName>
<ForeName>Steinar</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>The Research Council of Norway, Drammensveien 288, P.O. Box 564, NO-1327, Lysaker, Norway.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Davidson</LastName>
<ForeName>William S</ForeName>
<Initials>WS</Initials>
<AffiliationInfo><Affiliation>Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, V5A 1S6, Canada.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Gallardo-Escárate</LastName>
<ForeName>Cristian</ForeName>
<Initials>C</Initials>
<AffiliationInfo><Affiliation>Laboratory of Biotechnology and Aquatic Genomics, Interdisciplinary Center for Aquaculture Research, Department of Oceanography, Universidad de Concepción, 4030000, Concepción, Chile.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Goldammer</LastName>
<ForeName>Tom</ForeName>
<Initials>T</Initials>
<AffiliationInfo><Affiliation>Leibniz Institute for Farm Animal Biology, Institute for Genome Biology, Fish Genetics Unit, Wilhelm-Stahl-Allee 2, 18196, Dummerstorf, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Guiguen</LastName>
<ForeName>Yann</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>INRA, UR1037 Fish Physiology and Genomics, Rennes, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Iturra</LastName>
<ForeName>Patricia</ForeName>
<Initials>P</Initials>
<AffiliationInfo><Affiliation>Human Genetics Program ICBM Faculty of Medicine, University of Chile, Santiago, Chile.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Kijas</LastName>
<ForeName>James W</ForeName>
<Initials>JW</Initials>
<AffiliationInfo><Affiliation>CSIRO Agriculture, QLD, St Lucia, 4067, Australia.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Koop</LastName>
<ForeName>Ben F</ForeName>
<Initials>BF</Initials>
<AffiliationInfo><Affiliation>Department of Biology, University of Victoria, Victoria, BC, V8W 3N5, Canada.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Lien</LastName>
<ForeName>Sigbjørn</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>Centre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, NO-1432, Ås, Norway.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Maass</LastName>
<ForeName>Alejandro</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>Center for Mathematical Modelling, Department of Mathematical Engineering, University of Chile, 8370456, Santiago, Chile.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Center for Genome Regulation, University of Chile, 8370456, Santiago, Chile.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Martin</LastName>
<ForeName>Samuel A M</ForeName>
<Initials>SAM</Initials>
<AffiliationInfo><Affiliation>Institute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, AB24 2TZ, UK.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>McGinnity</LastName>
<ForeName>Philip</ForeName>
<Initials>P</Initials>
<AffiliationInfo><Affiliation>School of Biological, Earth and Environmental Sciences, University College Cork, Cork, Ireland.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Montecino</LastName>
<ForeName>Martin</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>Center for Biomedical Research, Universidad Andres Bello, 8370146, Santiago, Chile.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>FONDAP Center for Genome Regulation, Faculty of Biological Sciences and Faculty of Medicine, Universidad Andres Bello, 8370146, Santiago, Chile.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Naish</LastName>
<ForeName>Kerry A</ForeName>
<Initials>KA</Initials>
<AffiliationInfo><Affiliation>School of Aquatic and Fishery Sciences, University of Washington, Box 355020, Seattle, WA, 98195, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Nichols</LastName>
<ForeName>Krista M</ForeName>
<Initials>KM</Initials>
<AffiliationInfo><Affiliation>Conservation Biology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, 2725 Montlake Blvd E, Seattle, WA, 98112, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Ólafsson</LastName>
<ForeName>Kristinn</ForeName>
<Initials>K</Initials>
<AffiliationInfo><Affiliation>Matis Ltd, Vínlandsleið 12, 113, Reykjavík, Iceland.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Omholt</LastName>
<ForeName>Stig W</ForeName>
<Initials>SW</Initials>
<AffiliationInfo><Affiliation>Centre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, NO-1432, Ås, Norway.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>NTNU - Norwegian University of Science and Technology, NO-7491, Trondheim, Norway.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Palti</LastName>
<ForeName>Yniv</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>National Center for Cool and Cold Water Aquaculture, USDA ARS, 11861 Leetown Road, Kearneysville, WV, 25430, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Plastow</LastName>
<ForeName>Graham S</ForeName>
<Initials>GS</Initials>
<AffiliationInfo><Affiliation>Department of Agricultural, Food, and Nutritional Science, University of Alberta, Edmonton, AB, Canada.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Rexroad</LastName>
<ForeName>Caird E</ForeName>
<Initials>CE</Initials>
<Suffix>Rd</Suffix>
<AffiliationInfo><Affiliation>Office of National Programs, USDA ARS, 5601 Sunnyside Avenue, Beltsville, MD, 20705-5148, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Rise</LastName>
<ForeName>Matthew L</ForeName>
<Initials>ML</Initials>
<AffiliationInfo><Affiliation>Department of Ocean Sciences, Memorial University of Newfoundland, 1 Marine Lab Road, St. John's, NL, A1C 5S7, Canada.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Ritchie</LastName>
<ForeName>Rachael J</ForeName>
<Initials>RJ</Initials>
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</Author>
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<Initials>SR</Initials>
<AffiliationInfo><Affiliation>Centre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, NO-1432, Ås, Norway.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Schulte</LastName>
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<Initials>PM</Initials>
<AffiliationInfo><Affiliation>Department of Zoology, University of British Columbia, 6270 University Blvd, Vancouver, BC, V6T 1Z4, Canada.</Affiliation>
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</Author>
<Author ValidYN="Y"><LastName>Tello</LastName>
<ForeName>Alfredo</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>Instituto Tecnológico del Salmón S.A., INTESAL de SalmonChile, Puerto Montt, Chile.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Vidal</LastName>
<ForeName>Rodrigo</ForeName>
<Initials>R</Initials>
<AffiliationInfo><Affiliation>Laboratory of Molecular Ecology, Genomics, and Evolutionary Studies, Department of Biology, University of Santiago, 9170022, Santiago, Chile.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Vik</LastName>
<ForeName>Jon Olav</ForeName>
<Initials>JO</Initials>
<AffiliationInfo><Affiliation>Centre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, NO-1432, Ås, Norway.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wargelius</LastName>
<ForeName>Anna</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>Institute of Marine Research, P.O. Box 1870, Nordnes, NO-5817, Bergen, Norway.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Yáñez</LastName>
<ForeName>José Manuel</ForeName>
<Initials>JM</Initials>
<AffiliationInfo><Affiliation>Faculty of Veterinary and Animal Sciences, University of Chile, Av. Santa Rosa 11735, Santiago, Chile & Aquainnovo, Cardonal s/n, Puerto Montt, Chile.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><CollectiveName>FAASG Consortium</CollectiveName>
</Author>
</AuthorList>
<Language>eng</Language>
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</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2017</Year>
<Month>06</Month>
<Day>27</Day>
</ArticleDate>
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<MedlineTA>BMC Genomics</MedlineTA>
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<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Aquaculture</Keyword>
<Keyword MajorTopicYN="N">Comparative biology</Keyword>
<Keyword MajorTopicYN="N">Data sharing</Keyword>
<Keyword MajorTopicYN="N">Evolution</Keyword>
<Keyword MajorTopicYN="N">Functional annotation</Keyword>
<Keyword MajorTopicYN="N">Genome biology</Keyword>
<Keyword MajorTopicYN="N">Phenotyping</Keyword>
<Keyword MajorTopicYN="N">Salmonid fish</Keyword>
<Keyword MajorTopicYN="N">Standardized data and metadata</Keyword>
<Keyword MajorTopicYN="N">Whole genome duplication</Keyword>
</KeywordList>
<InvestigatorList><Investigator ValidYN="Y"><LastName>Primmer</LastName>
<ForeName>Craig R</ForeName>
<Initials>CR</Initials>
</Investigator>
<Investigator ValidYN="Y"><LastName>Macqueen</LastName>
<ForeName>Daniel J</ForeName>
<Initials>DJ</Initials>
</Investigator>
<Investigator ValidYN="Y"><LastName>Houston</LastName>
<ForeName>Ross D</ForeName>
<Initials>RD</Initials>
</Investigator>
<Investigator ValidYN="Y"><LastName>Nowak</LastName>
<ForeName>Barbara F</ForeName>
<Initials>BF</Initials>
</Investigator>
<Investigator ValidYN="Y"><LastName>Davidson</LastName>
<ForeName>Willie S</ForeName>
<Initials>WS</Initials>
</Investigator>
<Investigator ValidYN="Y"><LastName>Lien</LastName>
<ForeName>Sigbjørn</ForeName>
<Initials>S</Initials>
</Investigator>
<Investigator ValidYN="Y"><LastName>Koop</LastName>
<ForeName>Ben F</ForeName>
<Initials>BF</Initials>
</Investigator>
</InvestigatorList>
</MedlineCitation>
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<Month>10</Month>
<Day>11</Day>
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<PubMedPubDate PubStatus="accepted"><Year>2017</Year>
<Month>06</Month>
<Day>14</Day>
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