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Beyond the "Code": A Guide to the Description and Documentation of Biodiversity in Ciliated Protists (Alveolata, Ciliophora).

Identifieur interne : 000A04 ( PubMed/Curation ); précédent : 000A03; suivant : 000A05

Beyond the "Code": A Guide to the Description and Documentation of Biodiversity in Ciliated Protists (Alveolata, Ciliophora).

Auteurs : Alan Warren [Royaume-Uni] ; David J. Patterson [Australie] ; Micah Dunthorn [Allemagne] ; John C. Clamp [États-Unis] ; Undine E M. Achilles-Day [Royaume-Uni] ; Erna Aescht [Autriche] ; Saleh A. Al-Farraj [Arabie saoudite] ; Saleh Al-Quraishy [Arabie saoudite] ; Khaled Al-Rasheid [Arabie saoudite] ; Martin Carr [Royaume-Uni] ; John G. Day [Royaume-Uni] ; Marc Dellinger [France] ; Hamed A. El-Serehy [Arabie saoudite] ; Yangbo Fan [République populaire de Chine] ; Feng Gao [République populaire de Chine] ; Shan Gao [République populaire de Chine] ; Jun Gong [République populaire de Chine] ; Renu Gupta [Inde] ; Xiaozhong Hu [République populaire de Chine] ; Komal Kamra [Inde] ; Gaytha Langlois [États-Unis] ; Xiaofeng Lin [République populaire de Chine] ; Diana Lipscomb [États-Unis] ; Christopher S. Lobban [États-Unis] ; Pierangelo Luporini [Italie] ; Denis H. Lynn [Canada] ; Honggang Ma [République populaire de Chine] ; Miroslav Macek [Mexique] ; Jacqueline Mackenzie-Dodds [Royaume-Uni] ; Seema Makhija [Inde] ; Robert I. Mansergh [Royaume-Uni] ; Mercedes Martín-Cereceda [Espagne] ; Nettie Mcmiller [États-Unis] ; David J S. Montagnes [Royaume-Uni] ; Svetlana Nikolaeva [Royaume-Uni] ; Geoffrey Odhiambo Ong'Ondo [Kenya] ; Blanca Pérez-Uz [Espagne] ; Jasmine Purushothaman [Inde] ; Pablo Quintela-Alonso [Espagne] ; Johana Rotterová [République tchèque] ; Luciana Santoferrara [États-Unis] ; Chen Shao [République populaire de Chine] ; Zhuo Shen [République populaire de Chine] ; Xinlu Shi [République populaire de Chine] ; Weibo Song [République populaire de Chine] ; Thorsten Stoeck [Allemagne] ; Antonietta La Terza [Italie] ; Adriana Vallesi [Italie] ; Mei Wang [République populaire de Chine] ; Thomas Weisse [Autriche] ; Krzysztof Wiackowski [Pologne] ; Lei Wu [République populaire de Chine] ; Kuidong Xu [République populaire de Chine] ; Zhenzhen Yi [République populaire de Chine] ; Rebecca Zufall [États-Unis] ; Sabine Agatha [Autriche]

Source :

RBID : pubmed:28061024

Descripteurs français

English descriptors

Abstract

Recent advances in molecular technology have revolutionized research on all aspects of the biology of organisms, including ciliates, and created unprecedented opportunities for pursuing a more integrative approach to investigations of biodiversity. However, this goal is complicated by large gaps and inconsistencies that still exist in the foundation of basic information about biodiversity of ciliates. The present paper reviews issues relating to the taxonomy of ciliates and presents specific recommendations for best practice in the observation and documentation of their biodiversity. This effort stems from a workshop that explored ways to implement six Grand Challenges proposed by the International Research Coordination Network for Biodiversity of Ciliates (IRCN-BC). As part of its commitment to strengthening the knowledge base that supports research on biodiversity of ciliates, the IRCN-BC proposes to populate The Ciliate Guide, an online database, with biodiversity-related data and metadata to create a resource that will facilitate accurate taxonomic identifications and promote sharing of data.

DOI: 10.1111/jeu.12391
PubMed: 28061024

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pubmed:28061024

Le document en format XML

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<nlm:affiliation>SGTB Khalsa College, University of Delhi, Delhi, 110007, India.</nlm:affiliation>
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<wicri:regionArea>Department of Biological Sciences, George Washington University, Washington, District of Columbia, 20052</wicri:regionArea>
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<name sortKey="Martin Cereceda, Mercedes" sort="Martin Cereceda, Mercedes" uniqKey="Martin Cereceda M" first="Mercedes" last="Martín-Cereceda">Mercedes Martín-Cereceda</name>
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<nlm:affiliation>Department of Biological and Biomedical Sciences, North Carolina Central University, Durham, North Carolina, 27707, USA.</nlm:affiliation>
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<wicri:regionArea>Department of Biological and Biomedical Sciences, North Carolina Central University, Durham, North Carolina, 27707</wicri:regionArea>
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<name sortKey="Nikolaeva, Svetlana" sort="Nikolaeva, Svetlana" uniqKey="Nikolaeva S" first="Svetlana" last="Nikolaeva">Svetlana Nikolaeva</name>
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<nlm:affiliation>Department of Earth Sciences, Natural History Museum, London, SW7 5BD, United Kingdom.</nlm:affiliation>
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<name sortKey="Ong Ondo, Geoffrey Odhiambo" sort="Ong Ondo, Geoffrey Odhiambo" uniqKey="Ong Ondo G" first="Geoffrey Odhiambo" last="Ong'Ondo">Geoffrey Odhiambo Ong'Ondo</name>
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<nlm:affiliation>Department of Biological Sciences, Egerton University, Egerton, 20115, Kenya.</nlm:affiliation>
<country xml:lang="fr">Kenya</country>
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<name sortKey="Perez Uz, Blanca" sort="Perez Uz, Blanca" uniqKey="Perez Uz B" first="Blanca" last="Pérez-Uz">Blanca Pérez-Uz</name>
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<nlm:affiliation>Departamento de Microbiología III, Facultad de Biología, Universidad Complutense de Madrid, Madrid, 28040, Spain.</nlm:affiliation>
<country xml:lang="fr">Espagne</country>
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<name sortKey="Purushothaman, Jasmine" sort="Purushothaman, Jasmine" uniqKey="Purushothaman J" first="Jasmine" last="Purushothaman">Jasmine Purushothaman</name>
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<nlm:affiliation>Protozoology Section, Zoological Survey of India, Newalipore, Kolkata, 700053, India.</nlm:affiliation>
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<name sortKey="Quintela Alonso, Pablo" sort="Quintela Alonso, Pablo" uniqKey="Quintela Alonso P" first="Pablo" last="Quintela-Alonso">Pablo Quintela-Alonso</name>
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<nlm:affiliation>Departamento de Microbiología III, Facultad de Biología, Universidad Complutense de Madrid, Madrid, 28040, Spain.</nlm:affiliation>
<country xml:lang="fr">Espagne</country>
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<nlm:affiliation>Institute of Environmental Sciences, Jagiellonian University, Kraków, 30-387, Poland.</nlm:affiliation>
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<nlm:affiliation>Department of Biology and Biochemistry, University of Houston, Houston, Texas, 77006-5001, USA.</nlm:affiliation>
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<name sortKey="Agatha, Sabine" sort="Agatha, Sabine" uniqKey="Agatha S" first="Sabine" last="Agatha">Sabine Agatha</name>
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<nlm:affiliation>Department of Ecology and Evolution, University of Salzburg, Salzburg, A-5020, Austria.</nlm:affiliation>
<country xml:lang="fr">Autriche</country>
<wicri:regionArea>Department of Ecology and Evolution, University of Salzburg, Salzburg, A-5020</wicri:regionArea>
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<name sortKey="Warren, Alan" sort="Warren, Alan" uniqKey="Warren A" first="Alan" last="Warren">Alan Warren</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Life Sciences, Natural History Museum, London, SW7 5BD, United Kingdom.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Department of Life Sciences, Natural History Museum, London, SW7 5BD</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Patterson, David J" sort="Patterson, David J" uniqKey="Patterson D" first="David J" last="Patterson">David J. Patterson</name>
<affiliation wicri:level="1">
<nlm:affiliation>School of Biological Sciences, University of Sydney, Sydney, NSW, 2004, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>School of Biological Sciences, University of Sydney, Sydney, NSW, 2004</wicri:regionArea>
</affiliation>
</author>
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<name sortKey="Dunthorn, Micah" sort="Dunthorn, Micah" uniqKey="Dunthorn M" first="Micah" last="Dunthorn">Micah Dunthorn</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Ecology, University of Kaiserslautern, Kaiserslautern, 67663, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Department of Ecology, University of Kaiserslautern, Kaiserslautern, 67663</wicri:regionArea>
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<name sortKey="Clamp, John C" sort="Clamp, John C" uniqKey="Clamp J" first="John C" last="Clamp">John C. Clamp</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Biological and Biomedical Sciences, North Carolina Central University, Durham, North Carolina, 27707, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biological and Biomedical Sciences, North Carolina Central University, Durham, North Carolina, 27707</wicri:regionArea>
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<author>
<name sortKey="Achilles Day, Undine E M" sort="Achilles Day, Undine E M" uniqKey="Achilles Day U" first="Undine E M" last="Achilles-Day">Undine E M. Achilles-Day</name>
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<nlm:affiliation>Department of Life and Environmental Sciences, Bournemouth University, Bournemouth, BH12 5BB, United Kingdom.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Department of Life and Environmental Sciences, Bournemouth University, Bournemouth, BH12 5BB</wicri:regionArea>
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<name sortKey="Aescht, Erna" sort="Aescht, Erna" uniqKey="Aescht E" first="Erna" last="Aescht">Erna Aescht</name>
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<nlm:affiliation>Biology Center of the Upper Austrian Museum, Linz, A-4040, Austria.</nlm:affiliation>
<country xml:lang="fr">Autriche</country>
<wicri:regionArea>Biology Center of the Upper Austrian Museum, Linz, A-4040</wicri:regionArea>
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<nlm:affiliation>Department of Zoology, King Saud University, Riyadh, 11451, Saudi Arabia.</nlm:affiliation>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea>Department of Zoology, King Saud University, Riyadh, 11451</wicri:regionArea>
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<nlm:affiliation>Department of Zoology, King Saud University, Riyadh, 11451, Saudi Arabia.</nlm:affiliation>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea>Department of Zoology, King Saud University, Riyadh, 11451</wicri:regionArea>
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<affiliation wicri:level="1">
<nlm:affiliation>Department of Zoology, King Saud University, Riyadh, 11451, Saudi Arabia.</nlm:affiliation>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea>Department of Zoology, King Saud University, Riyadh, 11451</wicri:regionArea>
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<nlm:affiliation>Department of Biological Sciences, University of Huddersfield, Huddersfield, HD1 3DH, United Kingdom.</nlm:affiliation>
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<nlm:affiliation>Scottish Association for Marine Science, Oban, PA37 1QA, United Kingdom.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Scottish Association for Marine Science, Oban, PA37 1QA</wicri:regionArea>
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<nlm:affiliation>Muséum National d'Histoire Naturelle, Paris, 75005, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
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<nlm:affiliation>Department of Zoology, King Saud University, Riyadh, 11451, Saudi Arabia.</nlm:affiliation>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea>Department of Zoology, King Saud University, Riyadh, 11451</wicri:regionArea>
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<name sortKey="Fan, Yangbo" sort="Fan, Yangbo" uniqKey="Fan Y" first="Yangbo" last="Fan">Yangbo Fan</name>
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<nlm:affiliation>Laboratory of Protozoology, Institute of Evolution and Marine Biodiversity Ocean, University of China, Qingdao, 266003, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Laboratory of Protozoology, Institute of Evolution and Marine Biodiversity Ocean, University of China, Qingdao, 266003</wicri:regionArea>
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<name sortKey="Gao, Feng" sort="Gao, Feng" uniqKey="Gao F" first="Feng" last="Gao">Feng Gao</name>
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<nlm:affiliation>Laboratory of Protozoology, Institute of Evolution and Marine Biodiversity Ocean, University of China, Qingdao, 266003, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Laboratory of Protozoology, Institute of Evolution and Marine Biodiversity Ocean, University of China, Qingdao, 266003</wicri:regionArea>
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<name sortKey="Gao, Shan" sort="Gao, Shan" uniqKey="Gao S" first="Shan" last="Gao">Shan Gao</name>
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<nlm:affiliation>Laboratory of Protozoology, Institute of Evolution and Marine Biodiversity Ocean, University of China, Qingdao, 266003, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Laboratory of Protozoology, Institute of Evolution and Marine Biodiversity Ocean, University of China, Qingdao, 266003</wicri:regionArea>
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<name sortKey="Gong, Jun" sort="Gong, Jun" uniqKey="Gong J" first="Jun" last="Gong">Jun Gong</name>
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<nlm:affiliation>Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003</wicri:regionArea>
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<name sortKey="Gupta, Renu" sort="Gupta, Renu" uniqKey="Gupta R" first="Renu" last="Gupta">Renu Gupta</name>
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<nlm:affiliation>Maitreyi College, University of Delhi, New Delhi, 110021, India.</nlm:affiliation>
<country xml:lang="fr">Inde</country>
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<name sortKey="Hu, Xiaozhong" sort="Hu, Xiaozhong" uniqKey="Hu X" first="Xiaozhong" last="Hu">Xiaozhong Hu</name>
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<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Laboratory of Protozoology, Institute of Evolution and Marine Biodiversity Ocean, University of China, Qingdao, 266003</wicri:regionArea>
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<name sortKey="Kamra, Komal" sort="Kamra, Komal" uniqKey="Kamra K" first="Komal" last="Kamra">Komal Kamra</name>
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<nlm:affiliation>SGTB Khalsa College, University of Delhi, Delhi, 110007, India.</nlm:affiliation>
<country xml:lang="fr">Inde</country>
<wicri:regionArea>SGTB Khalsa College, University of Delhi, Delhi, 110007</wicri:regionArea>
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<name sortKey="Langlois, Gaytha" sort="Langlois, Gaytha" uniqKey="Langlois G" first="Gaytha" last="Langlois">Gaytha Langlois</name>
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<nlm:affiliation>Department of Science & Technology, Bryant University, Smithfield, Rhode Island, 02917, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Science & Technology, Bryant University, Smithfield, Rhode Island, 02917</wicri:regionArea>
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<name sortKey="Lin, Xiaofeng" sort="Lin, Xiaofeng" uniqKey="Lin X" first="Xiaofeng" last="Lin">Xiaofeng Lin</name>
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<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, School of Life Science, South China Normal University, Guangzhou, 510631</wicri:regionArea>
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</author>
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<name sortKey="Lipscomb, Diana" sort="Lipscomb, Diana" uniqKey="Lipscomb D" first="Diana" last="Lipscomb">Diana Lipscomb</name>
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<nlm:affiliation>Department of Biological Sciences, George Washington University, Washington, District of Columbia, 20052, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biological Sciences, George Washington University, Washington, District of Columbia, 20052</wicri:regionArea>
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<author>
<name sortKey="Lobban, Christopher S" sort="Lobban, Christopher S" uniqKey="Lobban C" first="Christopher S" last="Lobban">Christopher S. Lobban</name>
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<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Division of Natural Sciences, University of Guam, Mangilao, Guam, 96923</wicri:regionArea>
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<name sortKey="Luporini, Pierangelo" sort="Luporini, Pierangelo" uniqKey="Luporini P" first="Pierangelo" last="Luporini">Pierangelo Luporini</name>
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<country xml:lang="fr">Italie</country>
<wicri:regionArea>School of Biosciences and Veterinary Medicine, University of Camerino, Camerino (MC), 62032</wicri:regionArea>
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<name sortKey="Lynn, Denis H" sort="Lynn, Denis H" uniqKey="Lynn D" first="Denis H" last="Lynn">Denis H. Lynn</name>
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<country xml:lang="fr">Canada</country>
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<name sortKey="Ma, Honggang" sort="Ma, Honggang" uniqKey="Ma H" first="Honggang" last="Ma">Honggang Ma</name>
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<country xml:lang="fr">République populaire de Chine</country>
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<name sortKey="Macek, Miroslav" sort="Macek, Miroslav" uniqKey="Macek M" first="Miroslav" last="Macek">Miroslav Macek</name>
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<nlm:affiliation>Tropical Limnology Research Project, FES Iztacala, Universidad National Autonoma de México, Edo. México 540 90, Mexico.</nlm:affiliation>
<country xml:lang="fr">Mexique</country>
<wicri:regionArea>Tropical Limnology Research Project, FES Iztacala, Universidad National Autonoma de México, Edo. México 540 90</wicri:regionArea>
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<name sortKey="Mackenzie Dodds, Jacqueline" sort="Mackenzie Dodds, Jacqueline" uniqKey="Mackenzie Dodds J" first="Jacqueline" last="Mackenzie-Dodds">Jacqueline Mackenzie-Dodds</name>
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<title level="j">The Journal of eukaryotic microbiology</title>
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<div type="abstract" xml:lang="en">Recent advances in molecular technology have revolutionized research on all aspects of the biology of organisms, including ciliates, and created unprecedented opportunities for pursuing a more integrative approach to investigations of biodiversity. However, this goal is complicated by large gaps and inconsistencies that still exist in the foundation of basic information about biodiversity of ciliates. The present paper reviews issues relating to the taxonomy of ciliates and presents specific recommendations for best practice in the observation and documentation of their biodiversity. This effort stems from a workshop that explored ways to implement six Grand Challenges proposed by the International Research Coordination Network for Biodiversity of Ciliates (IRCN-BC). As part of its commitment to strengthening the knowledge base that supports research on biodiversity of ciliates, the IRCN-BC proposes to populate The Ciliate Guide, an online database, with biodiversity-related data and metadata to create a resource that will facilitate accurate taxonomic identifications and promote sharing of data.</div>
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<AbstractText>Recent advances in molecular technology have revolutionized research on all aspects of the biology of organisms, including ciliates, and created unprecedented opportunities for pursuing a more integrative approach to investigations of biodiversity. However, this goal is complicated by large gaps and inconsistencies that still exist in the foundation of basic information about biodiversity of ciliates. The present paper reviews issues relating to the taxonomy of ciliates and presents specific recommendations for best practice in the observation and documentation of their biodiversity. This effort stems from a workshop that explored ways to implement six Grand Challenges proposed by the International Research Coordination Network for Biodiversity of Ciliates (IRCN-BC). As part of its commitment to strengthening the knowledge base that supports research on biodiversity of ciliates, the IRCN-BC proposes to populate The Ciliate Guide, an online database, with biodiversity-related data and metadata to create a resource that will facilitate accurate taxonomic identifications and promote sharing of data.</AbstractText>
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