The sponge microbiome project.
Identifieur interne : 000380 ( PubMed/Curation ); précédent : 000379; suivant : 000381The sponge microbiome project.
Auteurs : Lucas Moitinho-Silva [Australie] ; Shaun Nielsen [Australie] ; Amnon Amir [États-Unis] ; Antonio Gonzalez [États-Unis] ; Gail L. Ackermann [États-Unis] ; Carlo Cerrano [Italie] ; Carmen Astudillo-Garcia [Nouvelle-Zélande] ; Cole Easson [États-Unis] ; Detmer Sipkema [Pays-Bas] ; Fang Liu [République populaire de Chine] ; Georg Steinert [Pays-Bas] ; Giorgos Kotoulas [Grèce] ; Grace P. Mccormack [Irlande (pays)] ; Guofang Feng [République populaire de Chine] ; James J. Bell [Nouvelle-Zélande] ; Jan Vicente [États-Unis] ; Johannes R. Björk [États-Unis] ; Jose M. Montoya [France] ; Julie B. Olson [États-Unis] ; Julie Reveillaud [France] ; Laura Steindler [Israël] ; Mari-Carmen Pineda [Australie] ; Maria V. Marra [Irlande (pays)] ; Micha Ilan [Israël] ; Michael W. Taylor [Nouvelle-Zélande] ; Paraskevi Polymenakou [Grèce] ; Patrick M. Erwin [États-Unis] ; Peter J. Schupp [Allemagne] ; Rachel L. Simister ; Rob Knight [États-Unis] ; Robert W. Thacker [États-Unis] ; Rodrigo Costa [Portugal] ; Russell T. Hill [États-Unis] ; Susanna Lopez-Legentil [États-Unis] ; Thanos Dailianis [Grèce] ; Timothy Ravasi ; Ute Hentschel [Allemagne] ; Zhiyong Li [République populaire de Chine] ; Nicole S. Webster [Australie] ; Torsten Thomas [Australie]Source :
- GigaScience [ 2047-217X ] ; 2017.
Abstract
Marine sponges (phylum Porifera) are a diverse, phylogenetically deep-branching clade known for forming intimate partnerships with complex communities of microorganisms. To date, 16S rRNA gene sequencing studies have largely utilised different extraction and amplification methodologies to target the microbial communities of a limited number of sponge species, severely limiting comparative analyses of sponge microbial diversity and structure. Here, we provide an extensive and standardised dataset that will facilitate sponge microbiome comparisons across large spatial, temporal, and environmental scales. Samples from marine sponges (n = 3569 specimens), seawater (n = 370), marine sediments (n = 65) and other environments (n = 29) were collected from different locations across the globe. This dataset incorporates at least 268 different sponge species, including several yet unidentified taxa. The V4 region of the 16S rRNA gene was amplified and sequenced from extracted DNA using standardised procedures. Raw sequences (total of 1.1 billion sequences) were processed and clustered with (i) a standard protocol using QIIME closed-reference picking resulting in 39 543 operational taxonomic units (OTU) at 97% sequence identity, (ii) a de novo clustering using Mothur resulting in 518 246 OTUs, and (iii) a new high-resolution Deblur protocol resulting in 83 908 unique bacterial sequences. Abundance tables, representative sequences, taxonomic classifications, and metadata are provided. This dataset represents a comprehensive resource of sponge-associated microbial communities based on 16S rRNA gene sequences that can be used to address overarching hypotheses regarding host-associated prokaryotes, including host specificity, convergent evolution, environmental drivers of microbiome structure, and the sponge-associated rare biosphere.
DOI: 10.1093/gigascience/gix077
PubMed: 29020741
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Rachel L. Simister<affiliation><nlm:affiliation>Department of Microbiology and Immunology, University of British Columbia, Canada, V6T 1Z3.</nlm:affiliation><wicri:noCountry code="subField">V6T 1Z3</wicri:noCountry></affiliation><affiliation><nlm:affiliation>KAUST Environmental Epigenetic Program (KEEP), Division of Biological and Environmental Sciences & Engineering, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.</nlm:affiliation><wicri:noCountry code="subField">Kingdom of Saudi Arabia</wicri:noCountry></affiliation>Le document en format XML
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China.</nlm:affiliation><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240</wicri:regionArea></affiliation></author><author><name sortKey="Steinert, Georg" sort="Steinert, Georg" uniqKey="Steinert G" first="Georg" last="Steinert">Georg Steinert</name><affiliation wicri:level="1"><nlm:affiliation>Wageningen University, Laboratory of Microbiology, Stippeneng 4, 6708 WE Wageningen, The Netherlands.</nlm:affiliation><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Wageningen University, Laboratory of Microbiology, Stippeneng 4, 6708 WE Wageningen</wicri:regionArea></affiliation></author><author><name sortKey="Kotoulas, Giorgos" sort="Kotoulas, Giorgos" uniqKey="Kotoulas G" first="Giorgos" last="Kotoulas">Giorgos Kotoulas</name><affiliation wicri:level="1"><nlm:affiliation>Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Thalassocosmos, 71500 Heraklion, Greece.</nlm:affiliation><country xml:lang="fr">Grèce</country><wicri:regionArea>Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Thalassocosmos, 71500 Heraklion</wicri:regionArea></affiliation></author><author><name sortKey="Mccormack, Grace P" sort="Mccormack, Grace P" uniqKey="Mccormack G" first="Grace P" last="Mccormack">Grace P. 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China.</nlm:affiliation><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240</wicri:regionArea></affiliation></author><author><name sortKey="Bell, James J" sort="Bell, James J" uniqKey="Bell J" first="James J" last="Bell">James J. Bell</name><affiliation wicri:level="1"><nlm:affiliation>School of Biological Sciences, Victoria University of Wellington, Wellington, New Zealand.</nlm:affiliation><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea>School of Biological Sciences, Victoria University of Wellington, Wellington</wicri:regionArea></affiliation></author><author><name sortKey="Vicente, Jan" sort="Vicente, Jan" uniqKey="Vicente J" first="Jan" last="Vicente">Jan Vicente</name><affiliation wicri:level="2"><nlm:affiliation>Hawaii Institute of Marine Biology, 46-007 Lilipuna Road, Kaneohe, HI 96744-1346.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Hawaï</region></placeName><wicri:cityArea>Hawaii Institute of Marine Biology, 46-007 Lilipuna Road, Kaneohe</wicri:cityArea></affiliation></author><author><name sortKey="Bjork, Johannes R" sort="Bjork, Johannes R" uniqKey="Bjork J" first="Johannes R" last="Björk">Johannes R. Björk</name><affiliation wicri:level="1"><nlm:affiliation>Galvin Life Science Center, University of Notre Dame, Notre Dame, IN 46556, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Galvin Life Science Center, University of Notre Dame, Notre Dame, IN 46556</wicri:regionArea></affiliation></author><author><name sortKey="Montoya, Jose M" sort="Montoya, Jose M" uniqKey="Montoya J" first="Jose M" last="Montoya">Jose M. Montoya</name><affiliation wicri:level="1"><nlm:affiliation>Ecological Networks and Global Change Group, Theoretical and Experimental Ecology Station, CNRS and Paul Sabatier University, Moulis, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Ecological Networks and Global Change Group, Theoretical and Experimental Ecology Station, CNRS and Paul Sabatier University, Moulis</wicri:regionArea></affiliation></author><author><name sortKey="Olson, Julie B" sort="Olson, Julie B" uniqKey="Olson J" first="Julie B" last="Olson">Julie B. Olson</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biological Sciences, University of Alabama, Tuscaloosa, AL 35487, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biological Sciences, University of Alabama, Tuscaloosa, AL 35487</wicri:regionArea></affiliation></author><author><name sortKey="Reveillaud, Julie" sort="Reveillaud, Julie" uniqKey="Reveillaud J" first="Julie" last="Reveillaud">Julie Reveillaud</name><affiliation wicri:level="1"><nlm:affiliation>INRA, UMR1309 CMAEE; Cirad, UMR15 CMAEE, 34398 Montpellier, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>INRA, UMR1309 CMAEE; Cirad, UMR15 CMAEE, 34398 Montpellier</wicri:regionArea></affiliation></author><author><name sortKey="Steindler, Laura" sort="Steindler, Laura" uniqKey="Steindler L" first="Laura" last="Steindler">Laura Steindler</name><affiliation wicri:level="1"><nlm:affiliation>Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel.</nlm:affiliation><country xml:lang="fr">Israël</country><wicri:regionArea>Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa</wicri:regionArea></affiliation></author><author><name sortKey="Pineda, Mari Carmen" sort="Pineda, Mari Carmen" uniqKey="Pineda M" first="Mari-Carmen" last="Pineda">Mari-Carmen Pineda</name><affiliation wicri:level="1"><nlm:affiliation>Australian Institute of Marine Science (AIMS), Townsville, 4810, Queensland, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Institute of Marine Science (AIMS), Townsville, 4810, Queensland</wicri:regionArea></affiliation></author><author><name sortKey="Marra, Maria V" sort="Marra, Maria V" uniqKey="Marra M" first="Maria V" last="Marra">Maria V. Marra</name><affiliation wicri:level="1"><nlm:affiliation>Zoology, School of Natural Sciences, Ryan Institute, National University of Ireland Galway, University Rd., Galway, Ireland.</nlm:affiliation><country xml:lang="fr">Irlande (pays)</country><wicri:regionArea>Zoology, School of Natural Sciences, Ryan Institute, National University of Ireland Galway, University Rd., Galway</wicri:regionArea></affiliation></author><author><name sortKey="Ilan, Micha" sort="Ilan, Micha" uniqKey="Ilan M" first="Micha" last="Ilan">Micha Ilan</name><affiliation wicri:level="1"><nlm:affiliation>Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel.</nlm:affiliation><country xml:lang="fr">Israël</country><wicri:regionArea>Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978</wicri:regionArea></affiliation></author><author><name sortKey="Taylor, Michael W" sort="Taylor, Michael W" uniqKey="Taylor M" first="Michael W" last="Taylor">Michael W. Taylor</name><affiliation wicri:level="1"><nlm:affiliation>School of Biological Sciences, University of Auckland, Auckland, New Zealand.</nlm:affiliation><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea>School of Biological Sciences, University of Auckland, Auckland</wicri:regionArea></affiliation></author><author><name sortKey="Polymenakou, Paraskevi" sort="Polymenakou, Paraskevi" uniqKey="Polymenakou P" first="Paraskevi" last="Polymenakou">Paraskevi Polymenakou</name><affiliation wicri:level="1"><nlm:affiliation>Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Thalassocosmos, 71500 Heraklion, Greece.</nlm:affiliation><country xml:lang="fr">Grèce</country><wicri:regionArea>Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Thalassocosmos, 71500 Heraklion</wicri:regionArea></affiliation></author><author><name sortKey="Erwin, Patrick M" sort="Erwin, Patrick M" uniqKey="Erwin P" first="Patrick M" last="Erwin">Patrick M. Erwin</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biology and Marine Biology, University of North Carolina Wilmington, Wilmington NC 28409, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology and Marine Biology, University of North Carolina Wilmington, Wilmington NC 28409</wicri:regionArea></affiliation></author><author><name sortKey="Schupp, Peter J" sort="Schupp, Peter J" uniqKey="Schupp P" first="Peter J" last="Schupp">Peter J. Schupp</name><affiliation wicri:level="1"><nlm:affiliation>Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky and University Oldenburg, Schleusenstr. 1, 26382 Wilhelmshaven, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky and University Oldenburg, Schleusenstr. 1, 26382 Wilhelmshaven</wicri:regionArea></affiliation></author><author><name sortKey="Simister, Rachel L" sort="Simister, Rachel L" uniqKey="Simister R" first="Rachel L" last="Simister">Rachel L. Simister</name><affiliation><nlm:affiliation>Department of Microbiology and Immunology, University of British Columbia, Canada, V6T 1Z3.</nlm:affiliation><wicri:noCountry code="subField">V6T 1Z3</wicri:noCountry></affiliation></author><author><name sortKey="Knight, Rob" sort="Knight, Rob" uniqKey="Knight R" first="Rob" last="Knight">Rob Knight</name><affiliation wicri:level="1"><nlm:affiliation>Department of Pediatrics, University of California - San Diego, La Jolla, CA 92093, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Pediatrics, University of California - San Diego, La Jolla, CA 92093</wicri:regionArea></affiliation></author><author><name sortKey="Thacker, Robert W" sort="Thacker, Robert W" uniqKey="Thacker R" first="Robert W" last="Thacker">Robert W. Thacker</name><affiliation wicri:level="1"><nlm:affiliation>Department of Ecology and Evolution, Stony Brook University, Stony Brook NY 11794, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Ecology and Evolution, Stony Brook University, Stony Brook NY 11794</wicri:regionArea></affiliation></author><author><name sortKey="Costa, Rodrigo" sort="Costa, Rodrigo" uniqKey="Costa R" first="Rodrigo" last="Costa">Rodrigo Costa</name><affiliation wicri:level="1"><nlm:affiliation>Institute for Bioengineering and Biosciences (IBB), Department of Bioengineering, IST, Universidade de Lisboa, Lisbon, Portugal.</nlm:affiliation><country xml:lang="fr">Portugal</country><wicri:regionArea>Institute for Bioengineering and Biosciences (IBB), Department of Bioengineering, IST, Universidade de Lisboa, Lisbon</wicri:regionArea></affiliation></author><author><name sortKey="Hill, Russell T" sort="Hill, Russell T" uniqKey="Hill R" first="Russell T" last="Hill">Russell T. Hill</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Marine and Environmental Technology, University of Maryland Center for Environmental Science, 701 East Pratt Street, Baltimore, MD 21202, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Institute of Marine and Environmental Technology, University of Maryland Center for Environmental Science, 701 East Pratt Street, Baltimore, MD 21202</wicri:regionArea></affiliation></author><author><name sortKey="Lopez Legentil, Susanna" sort="Lopez Legentil, Susanna" uniqKey="Lopez Legentil S" first="Susanna" last="Lopez-Legentil">Susanna Lopez-Legentil</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biology and Marine Biology, University of North Carolina Wilmington, Wilmington NC 28409, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology and Marine Biology, University of North Carolina Wilmington, Wilmington NC 28409</wicri:regionArea></affiliation></author><author><name sortKey="Dailianis, Thanos" sort="Dailianis, Thanos" uniqKey="Dailianis T" first="Thanos" last="Dailianis">Thanos Dailianis</name><affiliation wicri:level="1"><nlm:affiliation>Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Thalassocosmos, 71500 Heraklion, Greece.</nlm:affiliation><country xml:lang="fr">Grèce</country><wicri:regionArea>Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Thalassocosmos, 71500 Heraklion</wicri:regionArea></affiliation></author><author><name sortKey="Ravasi, Timothy" sort="Ravasi, Timothy" uniqKey="Ravasi T" first="Timothy" last="Ravasi">Timothy Ravasi</name><affiliation><nlm:affiliation>KAUST Environmental Epigenetic Program (KEEP), Division of Biological and Environmental Sciences & Engineering, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.</nlm:affiliation><wicri:noCountry code="subField">Kingdom of Saudi Arabia</wicri:noCountry></affiliation></author><author><name sortKey="Hentschel, Ute" sort="Hentschel, Ute" uniqKey="Hentschel U" first="Ute" last="Hentschel">Ute Hentschel</name><affiliation wicri:level="1"><nlm:affiliation>RD3 Marine Microbiology, GEOMAR Helmholtz Centre for Ocean Research, Kiel, and Christian-Albrechts-University of Kiel, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>RD3 Marine Microbiology, GEOMAR Helmholtz Centre for Ocean Research, Kiel, and Christian-Albrechts-University of Kiel</wicri:regionArea></affiliation></author><author><name sortKey="Li, Zhiyong" sort="Li, Zhiyong" uniqKey="Li Z" first="Zhiyong" last="Li">Zhiyong Li</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, P.R. China.</nlm:affiliation><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240</wicri:regionArea></affiliation></author><author><name sortKey="Webster, Nicole S" sort="Webster, Nicole S" uniqKey="Webster N" first="Nicole S" last="Webster">Nicole S. Webster</name><affiliation wicri:level="1"><nlm:affiliation>Australian Institute of Marine Science (AIMS), Townsville, 4810, Queensland, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Institute of Marine Science (AIMS), Townsville, 4810, Queensland</wicri:regionArea></affiliation></author><author><name sortKey="Thomas, Torsten" sort="Thomas, Torsten" uniqKey="Thomas T" first="Torsten" last="Thomas">Torsten Thomas</name><affiliation wicri:level="1"><nlm:affiliation>Centre for Marine Bio-Innovation and School of Biological, Earth and Environmental Sciences, The University of New South Wales, Sydney, 2052, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Centre for Marine Bio-Innovation and School of Biological, Earth and Environmental Sciences, The University of New South Wales, Sydney, 2052</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2017">2017</date><idno type="RBID">pubmed:29020741</idno><idno type="pmid">29020741</idno><idno type="doi">10.1093/gigascience/gix077</idno><idno type="wicri:Area/PubMed/Corpus">000382</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000382</idno><idno type="wicri:Area/PubMed/Curation">000380</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000380</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">The sponge microbiome project.</title><author><name sortKey="Moitinho Silva, Lucas" sort="Moitinho Silva, Lucas" uniqKey="Moitinho Silva L" first="Lucas" last="Moitinho-Silva">Lucas Moitinho-Silva</name><affiliation wicri:level="1"><nlm:affiliation>Centre for Marine Bio-Innovation and School of Biological, Earth and Environmental Sciences, The University of New South Wales, Sydney, 2052, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Centre for Marine Bio-Innovation and School of Biological, Earth and Environmental Sciences, The University of New South Wales, Sydney, 2052</wicri:regionArea></affiliation></author><author><name sortKey="Nielsen, Shaun" sort="Nielsen, Shaun" uniqKey="Nielsen S" first="Shaun" last="Nielsen">Shaun Nielsen</name><affiliation wicri:level="1"><nlm:affiliation>Centre for Marine Bio-Innovation and School of Biological, Earth and Environmental Sciences, The University of New South Wales, Sydney, 2052, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Centre for Marine Bio-Innovation and School of Biological, Earth and Environmental Sciences, The University of New South Wales, Sydney, 2052</wicri:regionArea></affiliation></author><author><name sortKey="Amir, Amnon" sort="Amir, Amnon" uniqKey="Amir A" first="Amnon" last="Amir">Amnon Amir</name><affiliation wicri:level="1"><nlm:affiliation>Department of Pediatrics, University of California - San Diego, La Jolla, CA 92093, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Pediatrics, University of California - San Diego, La Jolla, CA 92093</wicri:regionArea></affiliation></author><author><name sortKey="Gonzalez, Antonio" sort="Gonzalez, Antonio" uniqKey="Gonzalez A" first="Antonio" last="Gonzalez">Antonio Gonzalez</name><affiliation wicri:level="1"><nlm:affiliation>Department of Pediatrics, University of California - San Diego, La Jolla, CA 92093, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Pediatrics, University of California - San Diego, La Jolla, CA 92093</wicri:regionArea></affiliation></author><author><name sortKey="Ackermann, Gail L" sort="Ackermann, Gail L" uniqKey="Ackermann G" first="Gail L" last="Ackermann">Gail L. Ackermann</name><affiliation wicri:level="1"><nlm:affiliation>Department of Pediatrics, University of California - San Diego, La Jolla, CA 92093, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Pediatrics, University of California - San Diego, La Jolla, CA 92093</wicri:regionArea></affiliation></author><author><name sortKey="Cerrano, Carlo" sort="Cerrano, Carlo" uniqKey="Cerrano C" first="Carlo" last="Cerrano">Carlo Cerrano</name><affiliation wicri:level="1"><nlm:affiliation>Department of Life and Environmental Sciences, Polytechnic University of Marche, Ancona, 60131, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Life and Environmental Sciences, Polytechnic University of Marche, Ancona, 60131</wicri:regionArea></affiliation></author><author><name sortKey="Astudillo Garcia, Carmen" sort="Astudillo Garcia, Carmen" uniqKey="Astudillo Garcia C" first="Carmen" last="Astudillo-Garcia">Carmen Astudillo-Garcia</name><affiliation wicri:level="1"><nlm:affiliation>School of Biological Sciences, University of Auckland, Auckland, New Zealand.</nlm:affiliation><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea>School of Biological Sciences, University of Auckland, Auckland</wicri:regionArea></affiliation></author><author><name sortKey="Easson, Cole" sort="Easson, Cole" uniqKey="Easson C" first="Cole" last="Easson">Cole Easson</name><affiliation wicri:level="1"><nlm:affiliation>Halmos College of Natural Sciences and Oceanography, Nova Southeastern University, Dania Beach, FL 33004, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Halmos College of Natural Sciences and Oceanography, Nova Southeastern University, Dania Beach, FL 33004</wicri:regionArea></affiliation></author><author><name sortKey="Sipkema, Detmer" sort="Sipkema, Detmer" uniqKey="Sipkema D" first="Detmer" last="Sipkema">Detmer Sipkema</name><affiliation wicri:level="1"><nlm:affiliation>Wageningen University, Laboratory of Microbiology, Stippeneng 4, 6708 WE Wageningen, The Netherlands.</nlm:affiliation><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Wageningen University, Laboratory of Microbiology, Stippeneng 4, 6708 WE Wageningen</wicri:regionArea></affiliation></author><author><name sortKey="Liu, Fang" sort="Liu, Fang" uniqKey="Liu F" first="Fang" last="Liu">Fang Liu</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, P.R. China.</nlm:affiliation><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240</wicri:regionArea></affiliation></author><author><name sortKey="Steinert, Georg" sort="Steinert, Georg" uniqKey="Steinert G" first="Georg" last="Steinert">Georg Steinert</name><affiliation wicri:level="1"><nlm:affiliation>Wageningen University, Laboratory of Microbiology, Stippeneng 4, 6708 WE Wageningen, The Netherlands.</nlm:affiliation><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Wageningen University, Laboratory of Microbiology, Stippeneng 4, 6708 WE Wageningen</wicri:regionArea></affiliation></author><author><name sortKey="Kotoulas, Giorgos" sort="Kotoulas, Giorgos" uniqKey="Kotoulas G" first="Giorgos" last="Kotoulas">Giorgos Kotoulas</name><affiliation wicri:level="1"><nlm:affiliation>Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Thalassocosmos, 71500 Heraklion, Greece.</nlm:affiliation><country xml:lang="fr">Grèce</country><wicri:regionArea>Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Thalassocosmos, 71500 Heraklion</wicri:regionArea></affiliation></author><author><name sortKey="Mccormack, Grace P" sort="Mccormack, Grace P" uniqKey="Mccormack G" first="Grace P" last="Mccormack">Grace P. Mccormack</name><affiliation wicri:level="1"><nlm:affiliation>Zoology, School of Natural Sciences, Ryan Institute, National University of Ireland Galway, University Rd., Galway, Ireland.</nlm:affiliation><country xml:lang="fr">Irlande (pays)</country><wicri:regionArea>Zoology, School of Natural Sciences, Ryan Institute, National University of Ireland Galway, University Rd., Galway</wicri:regionArea></affiliation></author><author><name sortKey="Feng, Guofang" sort="Feng, Guofang" uniqKey="Feng G" first="Guofang" last="Feng">Guofang Feng</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, P.R. China.</nlm:affiliation><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240</wicri:regionArea></affiliation></author><author><name sortKey="Bell, James J" sort="Bell, James J" uniqKey="Bell J" first="James J" last="Bell">James J. Bell</name><affiliation wicri:level="1"><nlm:affiliation>School of Biological Sciences, Victoria University of Wellington, Wellington, New Zealand.</nlm:affiliation><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea>School of Biological Sciences, Victoria University of Wellington, Wellington</wicri:regionArea></affiliation></author><author><name sortKey="Vicente, Jan" sort="Vicente, Jan" uniqKey="Vicente J" first="Jan" last="Vicente">Jan Vicente</name><affiliation wicri:level="2"><nlm:affiliation>Hawaii Institute of Marine Biology, 46-007 Lilipuna Road, Kaneohe, HI 96744-1346.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Hawaï</region></placeName><wicri:cityArea>Hawaii Institute of Marine Biology, 46-007 Lilipuna Road, Kaneohe</wicri:cityArea></affiliation></author><author><name sortKey="Bjork, Johannes R" sort="Bjork, Johannes R" uniqKey="Bjork J" first="Johannes R" last="Björk">Johannes R. Björk</name><affiliation wicri:level="1"><nlm:affiliation>Galvin Life Science Center, University of Notre Dame, Notre Dame, IN 46556, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Galvin Life Science Center, University of Notre Dame, Notre Dame, IN 46556</wicri:regionArea></affiliation></author><author><name sortKey="Montoya, Jose M" sort="Montoya, Jose M" uniqKey="Montoya J" first="Jose M" last="Montoya">Jose M. Montoya</name><affiliation wicri:level="1"><nlm:affiliation>Ecological Networks and Global Change Group, Theoretical and Experimental Ecology Station, CNRS and Paul Sabatier University, Moulis, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Ecological Networks and Global Change Group, Theoretical and Experimental Ecology Station, CNRS and Paul Sabatier University, Moulis</wicri:regionArea></affiliation></author><author><name sortKey="Olson, Julie B" sort="Olson, Julie B" uniqKey="Olson J" first="Julie B" last="Olson">Julie B. Olson</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biological Sciences, University of Alabama, Tuscaloosa, AL 35487, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biological Sciences, University of Alabama, Tuscaloosa, AL 35487</wicri:regionArea></affiliation></author><author><name sortKey="Reveillaud, Julie" sort="Reveillaud, Julie" uniqKey="Reveillaud J" first="Julie" last="Reveillaud">Julie Reveillaud</name><affiliation wicri:level="1"><nlm:affiliation>INRA, UMR1309 CMAEE; Cirad, UMR15 CMAEE, 34398 Montpellier, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>INRA, UMR1309 CMAEE; Cirad, UMR15 CMAEE, 34398 Montpellier</wicri:regionArea></affiliation></author><author><name sortKey="Steindler, Laura" sort="Steindler, Laura" uniqKey="Steindler L" first="Laura" last="Steindler">Laura Steindler</name><affiliation wicri:level="1"><nlm:affiliation>Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel.</nlm:affiliation><country xml:lang="fr">Israël</country><wicri:regionArea>Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa</wicri:regionArea></affiliation></author><author><name sortKey="Pineda, Mari Carmen" sort="Pineda, Mari Carmen" uniqKey="Pineda M" first="Mari-Carmen" last="Pineda">Mari-Carmen Pineda</name><affiliation wicri:level="1"><nlm:affiliation>Australian Institute of Marine Science (AIMS), Townsville, 4810, Queensland, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Institute of Marine Science (AIMS), Townsville, 4810, Queensland</wicri:regionArea></affiliation></author><author><name sortKey="Marra, Maria V" sort="Marra, Maria V" uniqKey="Marra M" first="Maria V" last="Marra">Maria V. Marra</name><affiliation wicri:level="1"><nlm:affiliation>Zoology, School of Natural Sciences, Ryan Institute, National University of Ireland Galway, University Rd., Galway, Ireland.</nlm:affiliation><country xml:lang="fr">Irlande (pays)</country><wicri:regionArea>Zoology, School of Natural Sciences, Ryan Institute, National University of Ireland Galway, University Rd., Galway</wicri:regionArea></affiliation></author><author><name sortKey="Ilan, Micha" sort="Ilan, Micha" uniqKey="Ilan M" first="Micha" last="Ilan">Micha Ilan</name><affiliation wicri:level="1"><nlm:affiliation>Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel.</nlm:affiliation><country xml:lang="fr">Israël</country><wicri:regionArea>Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978</wicri:regionArea></affiliation></author><author><name sortKey="Taylor, Michael W" sort="Taylor, Michael W" uniqKey="Taylor M" first="Michael W" last="Taylor">Michael W. Taylor</name><affiliation wicri:level="1"><nlm:affiliation>School of Biological Sciences, University of Auckland, Auckland, New Zealand.</nlm:affiliation><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea>School of Biological Sciences, University of Auckland, Auckland</wicri:regionArea></affiliation></author><author><name sortKey="Polymenakou, Paraskevi" sort="Polymenakou, Paraskevi" uniqKey="Polymenakou P" first="Paraskevi" last="Polymenakou">Paraskevi Polymenakou</name><affiliation wicri:level="1"><nlm:affiliation>Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Thalassocosmos, 71500 Heraklion, Greece.</nlm:affiliation><country xml:lang="fr">Grèce</country><wicri:regionArea>Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Thalassocosmos, 71500 Heraklion</wicri:regionArea></affiliation></author><author><name sortKey="Erwin, Patrick M" sort="Erwin, Patrick M" uniqKey="Erwin P" first="Patrick M" last="Erwin">Patrick M. Erwin</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biology and Marine Biology, University of North Carolina Wilmington, Wilmington NC 28409, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology and Marine Biology, University of North Carolina Wilmington, Wilmington NC 28409</wicri:regionArea></affiliation></author><author><name sortKey="Schupp, Peter J" sort="Schupp, Peter J" uniqKey="Schupp P" first="Peter J" last="Schupp">Peter J. Schupp</name><affiliation wicri:level="1"><nlm:affiliation>Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky and University Oldenburg, Schleusenstr. 1, 26382 Wilhelmshaven, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky and University Oldenburg, Schleusenstr. 1, 26382 Wilhelmshaven</wicri:regionArea></affiliation></author><author><name sortKey="Simister, Rachel L" sort="Simister, Rachel L" uniqKey="Simister R" first="Rachel L" last="Simister">Rachel L. Simister</name><affiliation><nlm:affiliation>Department of Microbiology and Immunology, University of British Columbia, Canada, V6T 1Z3.</nlm:affiliation><wicri:noCountry code="subField">V6T 1Z3</wicri:noCountry></affiliation></author><author><name sortKey="Knight, Rob" sort="Knight, Rob" uniqKey="Knight R" first="Rob" last="Knight">Rob Knight</name><affiliation wicri:level="1"><nlm:affiliation>Department of Pediatrics, University of California - San Diego, La Jolla, CA 92093, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Pediatrics, University of California - San Diego, La Jolla, CA 92093</wicri:regionArea></affiliation></author><author><name sortKey="Thacker, Robert W" sort="Thacker, Robert W" uniqKey="Thacker R" first="Robert W" last="Thacker">Robert W. Thacker</name><affiliation wicri:level="1"><nlm:affiliation>Department of Ecology and Evolution, Stony Brook University, Stony Brook NY 11794, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Ecology and Evolution, Stony Brook University, Stony Brook NY 11794</wicri:regionArea></affiliation></author><author><name sortKey="Costa, Rodrigo" sort="Costa, Rodrigo" uniqKey="Costa R" first="Rodrigo" last="Costa">Rodrigo Costa</name><affiliation wicri:level="1"><nlm:affiliation>Institute for Bioengineering and Biosciences (IBB), Department of Bioengineering, IST, Universidade de Lisboa, Lisbon, Portugal.</nlm:affiliation><country xml:lang="fr">Portugal</country><wicri:regionArea>Institute for Bioengineering and Biosciences (IBB), Department of Bioengineering, IST, Universidade de Lisboa, Lisbon</wicri:regionArea></affiliation></author><author><name sortKey="Hill, Russell T" sort="Hill, Russell T" uniqKey="Hill R" first="Russell T" last="Hill">Russell T. Hill</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Marine and Environmental Technology, University of Maryland Center for Environmental Science, 701 East Pratt Street, Baltimore, MD 21202, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Institute of Marine and Environmental Technology, University of Maryland Center for Environmental Science, 701 East Pratt Street, Baltimore, MD 21202</wicri:regionArea></affiliation></author><author><name sortKey="Lopez Legentil, Susanna" sort="Lopez Legentil, Susanna" uniqKey="Lopez Legentil S" first="Susanna" last="Lopez-Legentil">Susanna Lopez-Legentil</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biology and Marine Biology, University of North Carolina Wilmington, Wilmington NC 28409, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology and Marine Biology, University of North Carolina Wilmington, Wilmington NC 28409</wicri:regionArea></affiliation></author><author><name sortKey="Dailianis, Thanos" sort="Dailianis, Thanos" uniqKey="Dailianis T" first="Thanos" last="Dailianis">Thanos Dailianis</name><affiliation wicri:level="1"><nlm:affiliation>Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Thalassocosmos, 71500 Heraklion, Greece.</nlm:affiliation><country xml:lang="fr">Grèce</country><wicri:regionArea>Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Thalassocosmos, 71500 Heraklion</wicri:regionArea></affiliation></author><author><name sortKey="Ravasi, Timothy" sort="Ravasi, Timothy" uniqKey="Ravasi T" first="Timothy" last="Ravasi">Timothy Ravasi</name><affiliation><nlm:affiliation>KAUST Environmental Epigenetic Program (KEEP), Division of Biological and Environmental Sciences & Engineering, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.</nlm:affiliation><wicri:noCountry code="subField">Kingdom of Saudi Arabia</wicri:noCountry></affiliation></author><author><name sortKey="Hentschel, Ute" sort="Hentschel, Ute" uniqKey="Hentschel U" first="Ute" last="Hentschel">Ute Hentschel</name><affiliation wicri:level="1"><nlm:affiliation>RD3 Marine Microbiology, GEOMAR Helmholtz Centre for Ocean Research, Kiel, and Christian-Albrechts-University of Kiel, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>RD3 Marine Microbiology, GEOMAR Helmholtz Centre for Ocean Research, Kiel, and Christian-Albrechts-University of Kiel</wicri:regionArea></affiliation></author><author><name sortKey="Li, Zhiyong" sort="Li, Zhiyong" uniqKey="Li Z" first="Zhiyong" last="Li">Zhiyong Li</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, P.R. China.</nlm:affiliation><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240</wicri:regionArea></affiliation></author><author><name sortKey="Webster, Nicole S" sort="Webster, Nicole S" uniqKey="Webster N" first="Nicole S" last="Webster">Nicole S. Webster</name><affiliation wicri:level="1"><nlm:affiliation>Australian Institute of Marine Science (AIMS), Townsville, 4810, Queensland, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Institute of Marine Science (AIMS), Townsville, 4810, Queensland</wicri:regionArea></affiliation></author><author><name sortKey="Thomas, Torsten" sort="Thomas, Torsten" uniqKey="Thomas T" first="Torsten" last="Thomas">Torsten Thomas</name><affiliation wicri:level="1"><nlm:affiliation>Centre for Marine Bio-Innovation and School of Biological, Earth and Environmental Sciences, The University of New South Wales, Sydney, 2052, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Centre for Marine Bio-Innovation and School of Biological, Earth and Environmental Sciences, The University of New South Wales, Sydney, 2052</wicri:regionArea></affiliation></author></analytic><series><title level="j">GigaScience</title><idno type="eISSN">2047-217X</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Marine sponges (phylum Porifera) are a diverse, phylogenetically deep-branching clade known for forming intimate partnerships with complex communities of microorganisms. To date, 16S rRNA gene sequencing studies have largely utilised different extraction and amplification methodologies to target the microbial communities of a limited number of sponge species, severely limiting comparative analyses of sponge microbial diversity and structure. Here, we provide an extensive and standardised dataset that will facilitate sponge microbiome comparisons across large spatial, temporal, and environmental scales. Samples from marine sponges (n = 3569 specimens), seawater (n = 370), marine sediments (n = 65) and other environments (n = 29) were collected from different locations across the globe. This dataset incorporates at least 268 different sponge species, including several yet unidentified taxa. The V4 region of the 16S rRNA gene was amplified and sequenced from extracted DNA using standardised procedures. Raw sequences (total of 1.1 billion sequences) were processed and clustered with (i) a standard protocol using QIIME closed-reference picking resulting in 39 543 operational taxonomic units (OTU) at 97% sequence identity, (ii) a de novo clustering using Mothur resulting in 518 246 OTUs, and (iii) a new high-resolution Deblur protocol resulting in 83 908 unique bacterial sequences. Abundance tables, representative sequences, taxonomic classifications, and metadata are provided. This dataset represents a comprehensive resource of sponge-associated microbial communities based on 16S rRNA gene sequences that can be used to address overarching hypotheses regarding host-associated prokaryotes, including host specificity, convergent evolution, environmental drivers of microbiome structure, and the sponge-associated rare biosphere.</div></front></TEI><pubmed><MedlineCitation Status="In-Process" Owner="NLM"><PMID Version="1">29020741</PMID><DateCreated><Year>2017</Year><Month>10</Month><Day>12</Day></DateCreated><DateRevised><Year>2017</Year><Month>10</Month><Day>15</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Electronic">2047-217X</ISSN><JournalIssue CitedMedium="Internet"><Volume>6</Volume><Issue>10</Issue><PubDate><Year>2017</Year><Month>Oct</Month><Day>01</Day></PubDate></JournalIssue><Title>GigaScience</Title><ISOAbbreviation>Gigascience</ISOAbbreviation></Journal><ArticleTitle>The sponge microbiome project.</ArticleTitle><Pagination><MedlinePgn>1-7</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1093/gigascience/gix077</ELocationID><Abstract><AbstractText>Marine sponges (phylum Porifera) are a diverse, phylogenetically deep-branching clade known for forming intimate partnerships with complex communities of microorganisms. To date, 16S rRNA gene sequencing studies have largely utilised different extraction and amplification methodologies to target the microbial communities of a limited number of sponge species, severely limiting comparative analyses of sponge microbial diversity and structure. Here, we provide an extensive and standardised dataset that will facilitate sponge microbiome comparisons across large spatial, temporal, and environmental scales. Samples from marine sponges (n = 3569 specimens), seawater (n = 370), marine sediments (n = 65) and other environments (n = 29) were collected from different locations across the globe. This dataset incorporates at least 268 different sponge species, including several yet unidentified taxa. The V4 region of the 16S rRNA gene was amplified and sequenced from extracted DNA using standardised procedures. Raw sequences (total of 1.1 billion sequences) were processed and clustered with (i) a standard protocol using QIIME closed-reference picking resulting in 39 543 operational taxonomic units (OTU) at 97% sequence identity, (ii) a de novo clustering using Mothur resulting in 518 246 OTUs, and (iii) a new high-resolution Deblur protocol resulting in 83 908 unique bacterial sequences. Abundance tables, representative sequences, taxonomic classifications, and metadata are provided. This dataset represents a comprehensive resource of sponge-associated microbial communities based on 16S rRNA gene sequences that can be used to address overarching hypotheses regarding host-associated prokaryotes, including host specificity, convergent evolution, environmental drivers of microbiome structure, and the sponge-associated rare biosphere.</AbstractText><CopyrightInformation>© The Authors 2017. Published by Oxford University Press.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Moitinho-Silva</LastName><ForeName>Lucas</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Centre for Marine Bio-Innovation and School of Biological, Earth and Environmental Sciences, The University of New South Wales, Sydney, 2052, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nielsen</LastName><ForeName>Shaun</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Centre for Marine Bio-Innovation and School of Biological, Earth and Environmental Sciences, The University of New South Wales, Sydney, 2052, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Amir</LastName><ForeName>Amnon</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Pediatrics, University of California - San Diego, La Jolla, CA 92093, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gonzalez</LastName><ForeName>Antonio</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Pediatrics, University of California - San Diego, La Jolla, CA 92093, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ackermann</LastName><ForeName>Gail L</ForeName><Initials>GL</Initials><AffiliationInfo><Affiliation>Department of Pediatrics, University of California - San Diego, La Jolla, CA 92093, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cerrano</LastName><ForeName>Carlo</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Department of Life and Environmental Sciences, Polytechnic University of Marche, Ancona, 60131, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Astudillo-Garcia</LastName><ForeName>Carmen</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>School of Biological Sciences, University of Auckland, Auckland, New Zealand.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Easson</LastName><ForeName>Cole</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Halmos College of Natural Sciences and Oceanography, Nova Southeastern University, Dania Beach, FL 33004, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sipkema</LastName><ForeName>Detmer</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Wageningen University, Laboratory of Microbiology, Stippeneng 4, 6708 WE Wageningen, The Netherlands.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Fang</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, P.R. China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Steinert</LastName><ForeName>Georg</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Wageningen University, Laboratory of Microbiology, Stippeneng 4, 6708 WE Wageningen, The Netherlands.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kotoulas</LastName><ForeName>Giorgos</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Thalassocosmos, 71500 Heraklion, Greece.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>McCormack</LastName><ForeName>Grace P</ForeName><Initials>GP</Initials><AffiliationInfo><Affiliation>Zoology, School of Natural Sciences, Ryan Institute, National University of Ireland Galway, University Rd., Galway, Ireland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Feng</LastName><ForeName>Guofang</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, P.R. China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bell</LastName><ForeName>James J</ForeName><Initials>JJ</Initials><AffiliationInfo><Affiliation>School of Biological Sciences, Victoria University of Wellington, Wellington, New Zealand.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Vicente</LastName><ForeName>Jan</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Hawaii Institute of Marine Biology, 46-007 Lilipuna Road, Kaneohe, HI 96744-1346.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Björk</LastName><ForeName>Johannes R</ForeName><Initials>JR</Initials><AffiliationInfo><Affiliation>Galvin Life Science Center, University of Notre Dame, Notre Dame, IN 46556, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Montoya</LastName><ForeName>Jose M</ForeName><Initials>JM</Initials><AffiliationInfo><Affiliation>Ecological Networks and Global Change Group, Theoretical and Experimental Ecology Station, CNRS and Paul Sabatier University, Moulis, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Olson</LastName><ForeName>Julie B</ForeName><Initials>JB</Initials><AffiliationInfo><Affiliation>Department of Biological Sciences, University of Alabama, Tuscaloosa, AL 35487, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Reveillaud</LastName><ForeName>Julie</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>INRA, UMR1309 CMAEE; Cirad, UMR15 CMAEE, 34398 Montpellier, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Steindler</LastName><ForeName>Laura</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pineda</LastName><ForeName>Mari-Carmen</ForeName><Initials>MC</Initials><AffiliationInfo><Affiliation>Australian Institute of Marine Science (AIMS), Townsville, 4810, Queensland, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Marra</LastName><ForeName>Maria V</ForeName><Initials>MV</Initials><AffiliationInfo><Affiliation>Zoology, School of Natural Sciences, Ryan Institute, National University of Ireland Galway, University Rd., Galway, Ireland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ilan</LastName><ForeName>Micha</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Taylor</LastName><ForeName>Michael W</ForeName><Initials>MW</Initials><AffiliationInfo><Affiliation>School of Biological Sciences, University of Auckland, Auckland, New Zealand.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Polymenakou</LastName><ForeName>Paraskevi</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Thalassocosmos, 71500 Heraklion, Greece.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Erwin</LastName><ForeName>Patrick M</ForeName><Initials>PM</Initials><AffiliationInfo><Affiliation>Department of Biology and Marine Biology, University of North Carolina Wilmington, Wilmington NC 28409, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Schupp</LastName><ForeName>Peter J</ForeName><Initials>PJ</Initials><AffiliationInfo><Affiliation>Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky and University Oldenburg, Schleusenstr. 1, 26382 Wilhelmshaven, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Simister</LastName><ForeName>Rachel L</ForeName><Initials>RL</Initials><AffiliationInfo><Affiliation>Department of Microbiology and Immunology, University of British Columbia, Canada, V6T 1Z3.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Knight</LastName><ForeName>Rob</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Department of Pediatrics, University of California - San Diego, La Jolla, CA 92093, USA.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Computer Science and Engineering, and Center for Microbiome Innovation, University of California - San Diego, La Jolla, CA 92093, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Thacker</LastName><ForeName>Robert W</ForeName><Initials>RW</Initials><AffiliationInfo><Affiliation>Department of Ecology and Evolution, Stony Brook University, Stony Brook NY 11794, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Costa</LastName><ForeName>Rodrigo</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Institute for Bioengineering and Biosciences (IBB), Department of Bioengineering, IST, Universidade de Lisboa, Lisbon, Portugal.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hill</LastName><ForeName>Russell T</ForeName><Initials>RT</Initials><AffiliationInfo><Affiliation>Institute of Marine and Environmental Technology, University of Maryland Center for Environmental Science, 701 East Pratt Street, Baltimore, MD 21202, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lopez-Legentil</LastName><ForeName>Susanna</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Department of Biology and Marine Biology, University of North Carolina Wilmington, Wilmington NC 28409, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dailianis</LastName><ForeName>Thanos</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Thalassocosmos, 71500 Heraklion, Greece.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ravasi</LastName><ForeName>Timothy</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>KAUST Environmental Epigenetic Program (KEEP), Division of Biological and Environmental Sciences & Engineering, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hentschel</LastName><ForeName>Ute</ForeName><Initials>U</Initials><AffiliationInfo><Affiliation>RD3 Marine Microbiology, GEOMAR Helmholtz Centre for Ocean Research, Kiel, and Christian-Albrechts-University of Kiel, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Zhiyong</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, P.R. 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MajorTopicYN="N">microbiome</Keyword><Keyword MajorTopicYN="N">symbiosis</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>04</Month><Day>05</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2017</Year><Month>08</Month><Day>08</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2017</Year><Month>10</Month><Day>13</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2017</Year><Month>10</Month><Day>13</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2017</Year><Month>10</Month><Day>13</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">29020741</ArticleId><ArticleId IdType="pii">4082886</ArticleId><ArticleId IdType="doi">10.1093/gigascience/gix077</ArticleId><ArticleId 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