RNA Seq analysis of the Eimeria tenella gametocyte transcriptome reveals clues about the molecular basis for sexual reproduction and oocyst biogenesis.
Identifieur interne : 003046 ( PubMed/Corpus ); précédent : 003045; suivant : 003047RNA Seq analysis of the Eimeria tenella gametocyte transcriptome reveals clues about the molecular basis for sexual reproduction and oocyst biogenesis.
Auteurs : Robert A. Walker ; Philippa A. Sharman ; Catherine M. Miller ; Christoph Lippuner ; Michal Okoniewski ; Ramon M. Eichenberger ; Chandra Ramakrishnan ; Fabien Brossier ; Peter Deplazes ; Adrian B. Hehl ; Nicholas C. SmithSource :
- BMC genomics [ 1471-2164 ] ; 2015.
English descriptors
- KwdEn :
- Amino Acid Sequence, Animals, Chickens (parasitology), Coccidiosis (parasitology), Coccidiosis (pathology), Eimeria tenella (genetics), Eimeria tenella (growth & development), Genome, Protozoan, Merozoites (metabolism), Microscopy, Fluorescence, Molecular Sequence Data, Oocysts (metabolism), Oxidoreductases (genetics), Oxidoreductases (metabolism), Protozoan Proteins (genetics), Protozoan Proteins (metabolism), RNA (chemistry), RNA (isolation & purification), Recombinant Proteins (biosynthesis), Recombinant Proteins (chemistry), Recombinant Proteins (genetics), Sequence Alignment, Sequence Analysis, RNA, Sporozoites (metabolism), Transcriptome.
- MESH :
- chemical , biosynthesis : Recombinant Proteins.
- chemical , chemistry : RNA, Recombinant Proteins.
- chemical , genetics : Oxidoreductases, Protozoan Proteins, Recombinant Proteins.
- genetics : Eimeria tenella.
- growth & development : Eimeria tenella.
- chemical , isolation & purification : RNA.
- metabolism : Merozoites, Oocysts, Oxidoreductases, Protozoan Proteins, Sporozoites.
- parasitology : Chickens, Coccidiosis.
- pathology : Coccidiosis.
- Amino Acid Sequence, Animals, Genome, Protozoan, Microscopy, Fluorescence, Molecular Sequence Data, Sequence Alignment, Sequence Analysis, RNA, Transcriptome.
Abstract
The protozoan Eimeria tenella is a common parasite of chickens, causing avian coccidiosis, a disease of on-going concern to agricultural industries. The high prevalence of E. tenella can be attributed to the resilient oocyst stage, which is transmitted between hosts in the environment. As in related Coccidia, development of the eimerian oocyst appears to be dependent on completion of the parasite's sexual cycle. RNA Seq transcriptome profiling offers insights into the mechanisms governing the biology of E. tenella sexual stages (gametocytes) and the potential to identify targets for blocking parasite transmission.
DOI: 10.1186/s12864-015-1298-6
PubMed: 25765081
Links to Exploration step
pubmed:25765081Le document en format XML
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Sharman</name><affiliation><nlm:affiliation>College of Public Health, Medical and Veterinary Sciences, James Cook University, Cairns Campus, McGregor Road, Smithfield, QLD, 4878, Australia. philippasharman@gmail.com.</nlm:affiliation></affiliation></author><author><name sortKey="Miller, Catherine M" sort="Miller, Catherine M" uniqKey="Miller C" first="Catherine M" last="Miller">Catherine M. 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Smith</name><affiliation><nlm:affiliation>Queensland Tropical Health Alliance Research Laboratory, Australian Institute of Tropical Health and Medicine, James Cook University, Cairns Campus, McGregor Road, Smithfield, QLD, 4878, Australia. nicholas.smith@jcu.edu.au.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2015">2015</date><idno type="RBID">pubmed:25765081</idno><idno type="pmid">25765081</idno><idno type="doi">10.1186/s12864-015-1298-6</idno><idno type="wicri:Area/PubMed/Corpus">003046</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">003046</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">RNA Seq analysis of the Eimeria tenella gametocyte transcriptome reveals clues about the molecular basis for sexual reproduction and oocyst biogenesis.</title><author><name sortKey="Walker, Robert A" sort="Walker, Robert A" uniqKey="Walker R" first="Robert A" last="Walker">Robert A. Walker</name><affiliation><nlm:affiliation>Queensland Tropical Health Alliance Research Laboratory, Australian Institute of Tropical Health and Medicine, James Cook University, Cairns Campus, McGregor Road, Smithfield, QLD, 4878, Australia. robert.walker1@jcu.edu.au.</nlm:affiliation></affiliation></author><author><name sortKey="Sharman, Philippa A" sort="Sharman, Philippa A" uniqKey="Sharman P" first="Philippa A" last="Sharman">Philippa A. Sharman</name><affiliation><nlm:affiliation>College of Public Health, Medical and Veterinary Sciences, James Cook University, Cairns Campus, McGregor Road, Smithfield, QLD, 4878, Australia. philippasharman@gmail.com.</nlm:affiliation></affiliation></author><author><name sortKey="Miller, Catherine M" sort="Miller, Catherine M" uniqKey="Miller C" first="Catherine M" last="Miller">Catherine M. Miller</name><affiliation><nlm:affiliation>College of Public Health, Medical and Veterinary Sciences, James Cook University, Cairns Campus, McGregor Road, Smithfield, QLD, 4878, Australia. kate.miller1@jcu.edu.au.</nlm:affiliation></affiliation></author><author><name sortKey="Lippuner, Christoph" sort="Lippuner, Christoph" uniqKey="Lippuner C" first="Christoph" last="Lippuner">Christoph Lippuner</name><affiliation><nlm:affiliation>Institute of Parasitology, University of Zurich, Winterthurerstrasse 266a, CH-8057, Zürich, Switzerland. christoph.lippuner@dkf.unibe.ch.</nlm:affiliation></affiliation></author><author><name sortKey="Okoniewski, Michal" sort="Okoniewski, Michal" uniqKey="Okoniewski M" first="Michal" last="Okoniewski">Michal Okoniewski</name><affiliation><nlm:affiliation>Functional Genomics Center Zurich, Winterthurerstrasse, CH-8057, Zürich, Switzerland. michal.okoniewski@gmail.com.</nlm:affiliation></affiliation></author><author><name sortKey="Eichenberger, Ramon M" sort="Eichenberger, Ramon M" uniqKey="Eichenberger R" first="Ramon M" last="Eichenberger">Ramon M. Eichenberger</name><affiliation><nlm:affiliation>Institute of Parasitology, University of Zurich, Winterthurerstrasse 266a, CH-8057, Zürich, Switzerland. ramon.eichenberger@uzh.ch.</nlm:affiliation></affiliation></author><author><name sortKey="Ramakrishnan, Chandra" sort="Ramakrishnan, Chandra" uniqKey="Ramakrishnan C" first="Chandra" last="Ramakrishnan">Chandra Ramakrishnan</name><affiliation><nlm:affiliation>Institute of Parasitology, University of Zurich, Winterthurerstrasse 266a, CH-8057, Zürich, Switzerland. chandra.ramakrishnan@uzh.ch.</nlm:affiliation></affiliation></author><author><name sortKey="Brossier, Fabien" sort="Brossier, Fabien" uniqKey="Brossier F" first="Fabien" last="Brossier">Fabien Brossier</name><affiliation><nlm:affiliation>Apicomplexes et Immunité Mucosale, INRA, UMR1282, Infectiologie et Santé Publique, F-37380, Nouzilly, France. nicholas.smith@jcu.edu.au.</nlm:affiliation></affiliation></author><author><name sortKey="Deplazes, Peter" sort="Deplazes, Peter" uniqKey="Deplazes P" first="Peter" last="Deplazes">Peter Deplazes</name><affiliation><nlm:affiliation>Institute of Parasitology, University of Zurich, Winterthurerstrasse 266a, CH-8057, Zürich, Switzerland. deplazesp@access.uzh.ch.</nlm:affiliation></affiliation></author><author><name sortKey="Hehl, Adrian B" sort="Hehl, Adrian B" uniqKey="Hehl A" first="Adrian B" last="Hehl">Adrian B. Hehl</name><affiliation><nlm:affiliation>Institute of Parasitology, University of Zurich, Winterthurerstrasse 266a, CH-8057, Zürich, Switzerland. adrian.hehl@uzh.ch.</nlm:affiliation></affiliation></author><author><name sortKey="Smith, Nicholas C" sort="Smith, Nicholas C" uniqKey="Smith N" first="Nicholas C" last="Smith">Nicholas C. Smith</name><affiliation><nlm:affiliation>Queensland Tropical Health Alliance Research Laboratory, Australian Institute of Tropical Health and Medicine, James Cook University, Cairns Campus, McGregor Road, Smithfield, QLD, 4878, Australia. nicholas.smith@jcu.edu.au.</nlm:affiliation></affiliation></author></analytic><series><title level="j">BMC genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence</term><term>Animals</term><term>Chickens (parasitology)</term><term>Coccidiosis (parasitology)</term><term>Coccidiosis (pathology)</term><term>Eimeria tenella (genetics)</term><term>Eimeria tenella (growth & development)</term><term>Genome, Protozoan</term><term>Merozoites (metabolism)</term><term>Microscopy, Fluorescence</term><term>Molecular Sequence Data</term><term>Oocysts (metabolism)</term><term>Oxidoreductases (genetics)</term><term>Oxidoreductases (metabolism)</term><term>Protozoan Proteins (genetics)</term><term>Protozoan Proteins (metabolism)</term><term>RNA (chemistry)</term><term>RNA (isolation & purification)</term><term>Recombinant Proteins (biosynthesis)</term><term>Recombinant Proteins (chemistry)</term><term>Recombinant Proteins (genetics)</term><term>Sequence Alignment</term><term>Sequence Analysis, RNA</term><term>Sporozoites (metabolism)</term><term>Transcriptome</term></keywords><keywords scheme="MESH" type="chemical" qualifier="biosynthesis" xml:lang="en"><term>Recombinant Proteins</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>RNA</term><term>Recombinant Proteins</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Oxidoreductases</term><term>Protozoan Proteins</term><term>Recombinant Proteins</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Eimeria tenella</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Eimeria tenella</term></keywords><keywords scheme="MESH" type="chemical" qualifier="isolation & purification" xml:lang="en"><term>RNA</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Merozoites</term><term>Oocysts</term><term>Oxidoreductases</term><term>Protozoan Proteins</term><term>Sporozoites</term></keywords><keywords scheme="MESH" qualifier="parasitology" xml:lang="en"><term>Chickens</term><term>Coccidiosis</term></keywords><keywords scheme="MESH" qualifier="pathology" xml:lang="en"><term>Coccidiosis</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term><term>Animals</term><term>Genome, Protozoan</term><term>Microscopy, Fluorescence</term><term>Molecular Sequence Data</term><term>Sequence Alignment</term><term>Sequence Analysis, RNA</term><term>Transcriptome</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The protozoan Eimeria tenella is a common parasite of chickens, causing avian coccidiosis, a disease of on-going concern to agricultural industries. The high prevalence of E. tenella can be attributed to the resilient oocyst stage, which is transmitted between hosts in the environment. As in related Coccidia, development of the eimerian oocyst appears to be dependent on completion of the parasite's sexual cycle. RNA Seq transcriptome profiling offers insights into the mechanisms governing the biology of E. tenella sexual stages (gametocytes) and the potential to identify targets for blocking parasite transmission.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25765081</PMID><DateCreated><Year>2015</Year><Month>04</Month><Day>17</Day></DateCreated><DateCompleted><Year>2016</Year><Month>01</Month><Day>20</Day></DateCompleted><DateRevised><Year>2015</Year><Month>04</Month><Day>17</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2164</ISSN><JournalIssue CitedMedium="Internet"><Volume>16</Volume><PubDate><Year>2015</Year><Month>Feb</Month><Day>18</Day></PubDate></JournalIssue><Title>BMC genomics</Title><ISOAbbreviation>BMC Genomics</ISOAbbreviation></Journal><ArticleTitle>RNA Seq analysis of the Eimeria tenella gametocyte transcriptome reveals clues about the molecular basis for sexual reproduction and oocyst biogenesis.</ArticleTitle><Pagination><MedlinePgn>94</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/s12864-015-1298-6</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">The protozoan Eimeria tenella is a common parasite of chickens, causing avian coccidiosis, a disease of on-going concern to agricultural industries. The high prevalence of E. tenella can be attributed to the resilient oocyst stage, which is transmitted between hosts in the environment. As in related Coccidia, development of the eimerian oocyst appears to be dependent on completion of the parasite's sexual cycle. RNA Seq transcriptome profiling offers insights into the mechanisms governing the biology of E. tenella sexual stages (gametocytes) and the potential to identify targets for blocking parasite transmission.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">Comparisons between the sequenced transcriptomes of E. tenella gametocytes and two asexual developmental stages, merozoites and sporozoites, revealed upregulated gametocyte transcription of 863 genes. Many of these genes code for proteins involved in coccidian sexual biology, such as oocyst wall biosynthesis and fertilisation, and some of these were characterised in more depth. Thus, macrogametocyte-specific expression and localisation was confirmed for two proteins destined for incorporation into the oocyst wall, as well as for a subtilisin protease and an oxidoreductase. Homologues of an oocyst wall protein and oxidoreductase were found in the related coccidian, Toxoplasma gondii, and shown to be macrogametocyte-specific. In addition, a microgametocyte gamete fusion protein, EtHAP2, was discovered.</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">The need for novel vaccine candidates capable of controlling coccidiosis is rising and this panel of gametocyte targets represents an invaluable resource for development of future strategies to interrupt parasite transmission, not just in Eimeria but in other Coccidia, including Toxoplasma, where transmission blocking is a relatively unexplored strategy.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Walker</LastName><ForeName>Robert A</ForeName><Initials>RA</Initials><AffiliationInfo><Affiliation>Queensland Tropical Health Alliance Research Laboratory, Australian Institute of Tropical Health and Medicine, James Cook University, Cairns Campus, McGregor Road, Smithfield, QLD, 4878, Australia. robert.walker1@jcu.edu.au.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Institute of Parasitology, University of Zurich, Winterthurerstrasse 266a, CH-8057, Zürich, Switzerland. robert.walker1@jcu.edu.au.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sharman</LastName><ForeName>Philippa A</ForeName><Initials>PA</Initials><AffiliationInfo><Affiliation>College of Public Health, Medical and Veterinary Sciences, James Cook University, Cairns Campus, McGregor Road, Smithfield, QLD, 4878, Australia. philippasharman@gmail.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Miller</LastName><ForeName>Catherine M</ForeName><Initials>CM</Initials><AffiliationInfo><Affiliation>College of Public Health, Medical and Veterinary Sciences, James Cook University, Cairns Campus, McGregor Road, Smithfield, QLD, 4878, Australia. kate.miller1@jcu.edu.au.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lippuner</LastName><ForeName>Christoph</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Institute of Parasitology, University of Zurich, Winterthurerstrasse 266a, CH-8057, Zürich, Switzerland. christoph.lippuner@dkf.unibe.ch.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Farm Animal, University of Zurich, Winterthurerstrasse, CH-8057, Zürich, Switzerland. christoph.lippuner@dkf.unibe.ch.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Okoniewski</LastName><ForeName>Michal</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Functional Genomics Center Zurich, Winterthurerstrasse, CH-8057, Zürich, Switzerland. michal.okoniewski@gmail.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Eichenberger</LastName><ForeName>Ramon M</ForeName><Initials>RM</Initials><AffiliationInfo><Affiliation>Institute of Parasitology, University of Zurich, Winterthurerstrasse 266a, CH-8057, Zürich, Switzerland. ramon.eichenberger@uzh.ch.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ramakrishnan</LastName><ForeName>Chandra</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Institute of Parasitology, University of Zurich, Winterthurerstrasse 266a, CH-8057, Zürich, Switzerland. chandra.ramakrishnan@uzh.ch.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Brossier</LastName><ForeName>Fabien</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Apicomplexes et Immunité Mucosale, INRA, UMR1282, Infectiologie et Santé Publique, F-37380, Nouzilly, France. nicholas.smith@jcu.edu.au.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Université François Rabelais de Tours, UMR1282, Infectiologie et Santé Publique, F-37000, Tours, France. nicholas.smith@jcu.edu.au.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Deplazes</LastName><ForeName>Peter</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Institute of Parasitology, University of Zurich, Winterthurerstrasse 266a, CH-8057, Zürich, Switzerland. deplazesp@access.uzh.ch.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hehl</LastName><ForeName>Adrian B</ForeName><Initials>AB</Initials><AffiliationInfo><Affiliation>Institute of Parasitology, University of Zurich, Winterthurerstrasse 266a, CH-8057, Zürich, Switzerland. adrian.hehl@uzh.ch.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Smith</LastName><ForeName>Nicholas C</ForeName><Initials>NC</Initials><AffiliationInfo><Affiliation>Queensland Tropical Health Alliance Research Laboratory, Australian Institute of Tropical Health and Medicine, James Cook University, Cairns Campus, McGregor Road, Smithfield, QLD, 4878, Australia. nicholas.smith@jcu.edu.au.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>02</Month><Day>18</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>BMC Genomics</MedlineTA><NlmUniqueID>100965258</NlmUniqueID><ISSNLinking>1471-2164</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D015800">Protozoan Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D011994">Recombinant Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>63231-63-0</RegistryNumber><NameOfSubstance UI="D012313">RNA</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 1.-</RegistryNumber><NameOfSubstance UI="D010088">Oxidoreductases</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><CommentsCorrectionsList><CommentsCorrections RefType="Cites"><RefSource>Mol Biochem Parasitol. 2005 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Version="1">16324218</PMID></CommentsCorrections></CommentsCorrectionsList><MeshHeadingList><MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002645" MajorTopicYN="N">Chickens</DescriptorName><QualifierName UI="Q000469" MajorTopicYN="N">parasitology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D003048" MajorTopicYN="N">Coccidiosis</DescriptorName><QualifierName UI="Q000469" MajorTopicYN="N">parasitology</QualifierName><QualifierName UI="Q000473" MajorTopicYN="N">pathology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016786" MajorTopicYN="N">Eimeria tenella</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName 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IdType="pubmed">25765081</ArticleId><ArticleId IdType="doi">10.1186/s12864-015-1298-6</ArticleId><ArticleId IdType="pii">s12864-015-1298-6</ArticleId><ArticleId IdType="pmc">PMC4345034</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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