RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations.
Identifieur interne : 002352 ( PubMed/Corpus ); précédent : 002351; suivant : 002353RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations.
Auteurs : Edin Hamzi ; Rikke Br Dsgaard Kj Rup ; Núria Mach ; Guilietta Minozzi ; Francesco Strozzi ; Valentina Gualdi ; John L. Williams ; Jun Chen ; Eva Wattrang ; Bart Buitenhuis ; Helle Risdahl Juul-Madsen ; Tina S Rensen DalgaardSource :
- BMC genomics [ 1471-2164 ] ; 2016.
English descriptors
- KwdEn :
- MESH :
- chemical , blood : Mannose-Binding Lectin.
- genetics : Infectious bronchitis virus, Mannose-Binding Lectin.
- physiopathology : Coronavirus Infections.
- veterinary : Coronavirus Infections.
- Animals, Chickens, Sequence Analysis, RNA, Transcriptome.
Abstract
Avian infectious bronchitis is a highly contagious disease of the upper-respiratory tract caused by infectious bronchitis virus (IBV). Understanding the molecular mechanisms involved in the interaction between innate and adaptive immune responses to IBV infection is a crucial element for further improvements in strategies to control IB. To this end, two chicken lines, selected for high (L10H line) and low (L10L line) serum concentration of mannose-binding lectin (MBL) were studied. In total, 32 birds from each line were used. Sixteen birds from each line were infected with IBV and sixteen were left uninfected. Eight uninfected and infected birds from each line were euthanized at 1 and 3 weeks post infection. RNA sequencing was performed on spleen samples from all 64 birds and differential gene expression analysis was performed for four comparisons: L10L line versus L10H line for uninfected birds at weeks 1 and 3, respectively, and in the same way for infected birds. Functional analysis was performed using Gene Ontology (GO) Immune System Process terms specific for Gallus gallus.
DOI: 10.1186/s12864-016-2403-1
PubMed: 26819139
Links to Exploration step
pubmed:26819139Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations.</title><author><name sortKey="Hamzi, Edin" sort="Hamzi, Edin" uniqKey="Hamzi E" first="Edin" last="Hamzi">Edin Hamzi</name><affiliation><nlm:affiliation>UMR1313 Animal Genetics and Integrative Biology Unit, AgroParisTech, Université Paris-Saclay, 16 rue Claude Bernard, 75005, Paris, France. edin.hamzic@jouy.inra.fr.</nlm:affiliation></affiliation></author><author><name sortKey="Kj Rup, Rikke Br Dsgaard" sort="Kj Rup, Rikke Br Dsgaard" uniqKey="Kj Rup R" first="Rikke Br Dsgaard" last="Kj Rup">Rikke Br Dsgaard Kj Rup</name><affiliation><nlm:affiliation>Department of Animal Science, Aarhus University, Blichers Allé 20, P.O. Box 50, 8830, Tjele, Denmark. rikke.kjaerup@anis.au.dk.</nlm:affiliation></affiliation></author><author><name sortKey="Mach, Nuria" sort="Mach, Nuria" uniqKey="Mach N" first="Núria" last="Mach">Núria Mach</name><affiliation><nlm:affiliation>UMR1313 Animal Genetics and Integrative Biology Unit, INRA, Université Paris-Saclay, Domaine de Vilvert, 78350, Jouy-en-Josas, France. nuria.mach@jouy.inra.fr.</nlm:affiliation></affiliation></author><author><name sortKey="Minozzi, Guilietta" sort="Minozzi, Guilietta" uniqKey="Minozzi G" first="Guilietta" last="Minozzi">Guilietta Minozzi</name><affiliation><nlm:affiliation>Parco Tecnologico Padano, Via Einstein, 26900, Lodi, Italy. giulietta.minozzi@unimi.it.</nlm:affiliation></affiliation></author><author><name sortKey="Strozzi, Francesco" sort="Strozzi, Francesco" uniqKey="Strozzi F" first="Francesco" last="Strozzi">Francesco Strozzi</name><affiliation><nlm:affiliation>Parco Tecnologico Padano, Via Einstein, 26900, Lodi, Italy. francesco.strozzi@ptp.it.</nlm:affiliation></affiliation></author><author><name sortKey="Gualdi, Valentina" sort="Gualdi, Valentina" uniqKey="Gualdi V" first="Valentina" last="Gualdi">Valentina Gualdi</name><affiliation><nlm:affiliation>Parco Tecnologico Padano, Via Einstein, 26900, Lodi, Italy. valentina.gualdi@ptp.it.</nlm:affiliation></affiliation></author><author><name sortKey="Williams, John L" sort="Williams, John L" uniqKey="Williams J" first="John L" last="Williams">John L. Williams</name><affiliation><nlm:affiliation>Parco Tecnologico Padano, Via Einstein, 26900, Lodi, Italy. john.williams01@adelaide.edu.au.</nlm:affiliation></affiliation></author><author><name sortKey="Chen, Jun" sort="Chen, Jun" uniqKey="Chen J" first="Jun" last="Chen">Jun Chen</name><affiliation><nlm:affiliation>Cobb-Vantress Inc, US-412 Road, Siloam Springs, AR, 72761, USA. jun.chen@cobb-vantress.com.</nlm:affiliation></affiliation></author><author><name sortKey="Wattrang, Eva" sort="Wattrang, Eva" uniqKey="Wattrang E" first="Eva" last="Wattrang">Eva Wattrang</name><affiliation><nlm:affiliation>National Veterinary Institute, Ulls väg 2B, 751 89, Uppsala, Sweden. eva.wattrang@sva.se.</nlm:affiliation></affiliation></author><author><name sortKey="Buitenhuis, Bart" sort="Buitenhuis, Bart" uniqKey="Buitenhuis B" first="Bart" last="Buitenhuis">Bart Buitenhuis</name><affiliation><nlm:affiliation>Department of Molecular Biology and Genetics, Center for Quantitative Genetics and Genomics, Aarhus University, Blichers Allé 20, P.O. Box 50, 8830, Tjele, Denmark. bart.buitenhuis@mbg.au.dk.</nlm:affiliation></affiliation></author><author><name sortKey="Juul Madsen, Helle Risdahl" sort="Juul Madsen, Helle Risdahl" uniqKey="Juul Madsen H" first="Helle Risdahl" last="Juul-Madsen">Helle Risdahl Juul-Madsen</name><affiliation><nlm:affiliation>Department of Animal Science, Aarhus University, Blichers Allé 20, P.O. Box 50, 8830, Tjele, Denmark. helle.juulmadsen@anis.au.dk.</nlm:affiliation></affiliation></author><author><name sortKey="Dalgaard, Tina S Rensen" sort="Dalgaard, Tina S Rensen" uniqKey="Dalgaard T" first="Tina S Rensen" last="Dalgaard">Tina S Rensen Dalgaard</name><affiliation><nlm:affiliation>Department of Animal Science, Aarhus University, Blichers Allé 20, P.O. Box 50, 8830, Tjele, Denmark. tina.dalgaard@anis.au.dk.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2016">2016</date><idno type="RBID">pubmed:26819139</idno><idno type="pmid">26819139</idno><idno type="doi">10.1186/s12864-016-2403-1</idno><idno type="wicri:Area/PubMed/Corpus">002352</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">002352</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations.</title><author><name sortKey="Hamzi, Edin" sort="Hamzi, Edin" uniqKey="Hamzi E" first="Edin" last="Hamzi">Edin Hamzi</name><affiliation><nlm:affiliation>UMR1313 Animal Genetics and Integrative Biology Unit, AgroParisTech, Université Paris-Saclay, 16 rue Claude Bernard, 75005, Paris, France. edin.hamzic@jouy.inra.fr.</nlm:affiliation></affiliation></author><author><name sortKey="Kj Rup, Rikke Br Dsgaard" sort="Kj Rup, Rikke Br Dsgaard" uniqKey="Kj Rup R" first="Rikke Br Dsgaard" last="Kj Rup">Rikke Br Dsgaard Kj Rup</name><affiliation><nlm:affiliation>Department of Animal Science, Aarhus University, Blichers Allé 20, P.O. Box 50, 8830, Tjele, Denmark. rikke.kjaerup@anis.au.dk.</nlm:affiliation></affiliation></author><author><name sortKey="Mach, Nuria" sort="Mach, Nuria" uniqKey="Mach N" first="Núria" last="Mach">Núria Mach</name><affiliation><nlm:affiliation>UMR1313 Animal Genetics and Integrative Biology Unit, INRA, Université Paris-Saclay, Domaine de Vilvert, 78350, Jouy-en-Josas, France. nuria.mach@jouy.inra.fr.</nlm:affiliation></affiliation></author><author><name sortKey="Minozzi, Guilietta" sort="Minozzi, Guilietta" uniqKey="Minozzi G" first="Guilietta" last="Minozzi">Guilietta Minozzi</name><affiliation><nlm:affiliation>Parco Tecnologico Padano, Via Einstein, 26900, Lodi, Italy. giulietta.minozzi@unimi.it.</nlm:affiliation></affiliation></author><author><name sortKey="Strozzi, Francesco" sort="Strozzi, Francesco" uniqKey="Strozzi F" first="Francesco" last="Strozzi">Francesco Strozzi</name><affiliation><nlm:affiliation>Parco Tecnologico Padano, Via Einstein, 26900, Lodi, Italy. francesco.strozzi@ptp.it.</nlm:affiliation></affiliation></author><author><name sortKey="Gualdi, Valentina" sort="Gualdi, Valentina" uniqKey="Gualdi V" first="Valentina" last="Gualdi">Valentina Gualdi</name><affiliation><nlm:affiliation>Parco Tecnologico Padano, Via Einstein, 26900, Lodi, Italy. valentina.gualdi@ptp.it.</nlm:affiliation></affiliation></author><author><name sortKey="Williams, John L" sort="Williams, John L" uniqKey="Williams J" first="John L" last="Williams">John L. Williams</name><affiliation><nlm:affiliation>Parco Tecnologico Padano, Via Einstein, 26900, Lodi, Italy. john.williams01@adelaide.edu.au.</nlm:affiliation></affiliation></author><author><name sortKey="Chen, Jun" sort="Chen, Jun" uniqKey="Chen J" first="Jun" last="Chen">Jun Chen</name><affiliation><nlm:affiliation>Cobb-Vantress Inc, US-412 Road, Siloam Springs, AR, 72761, USA. jun.chen@cobb-vantress.com.</nlm:affiliation></affiliation></author><author><name sortKey="Wattrang, Eva" sort="Wattrang, Eva" uniqKey="Wattrang E" first="Eva" last="Wattrang">Eva Wattrang</name><affiliation><nlm:affiliation>National Veterinary Institute, Ulls väg 2B, 751 89, Uppsala, Sweden. eva.wattrang@sva.se.</nlm:affiliation></affiliation></author><author><name sortKey="Buitenhuis, Bart" sort="Buitenhuis, Bart" uniqKey="Buitenhuis B" first="Bart" last="Buitenhuis">Bart Buitenhuis</name><affiliation><nlm:affiliation>Department of Molecular Biology and Genetics, Center for Quantitative Genetics and Genomics, Aarhus University, Blichers Allé 20, P.O. Box 50, 8830, Tjele, Denmark. bart.buitenhuis@mbg.au.dk.</nlm:affiliation></affiliation></author><author><name sortKey="Juul Madsen, Helle Risdahl" sort="Juul Madsen, Helle Risdahl" uniqKey="Juul Madsen H" first="Helle Risdahl" last="Juul-Madsen">Helle Risdahl Juul-Madsen</name><affiliation><nlm:affiliation>Department of Animal Science, Aarhus University, Blichers Allé 20, P.O. Box 50, 8830, Tjele, Denmark. helle.juulmadsen@anis.au.dk.</nlm:affiliation></affiliation></author><author><name sortKey="Dalgaard, Tina S Rensen" sort="Dalgaard, Tina S Rensen" uniqKey="Dalgaard T" first="Tina S Rensen" last="Dalgaard">Tina S Rensen Dalgaard</name><affiliation><nlm:affiliation>Department of Animal Science, Aarhus University, Blichers Allé 20, P.O. Box 50, 8830, Tjele, Denmark. tina.dalgaard@anis.au.dk.</nlm:affiliation></affiliation></author></analytic><series><title level="j">BMC genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Chickens</term><term>Coronavirus Infections (physiopathology)</term><term>Coronavirus Infections (veterinary)</term><term>Infectious bronchitis virus (genetics)</term><term>Mannose-Binding Lectin (blood)</term><term>Mannose-Binding Lectin (genetics)</term><term>Sequence Analysis, RNA</term><term>Transcriptome</term></keywords><keywords scheme="MESH" type="chemical" qualifier="blood" xml:lang="en"><term>Mannose-Binding Lectin</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Infectious bronchitis virus</term><term>Mannose-Binding Lectin</term></keywords><keywords scheme="MESH" qualifier="physiopathology" xml:lang="en"><term>Coronavirus Infections</term></keywords><keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Coronavirus Infections</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Chickens</term><term>Sequence Analysis, RNA</term><term>Transcriptome</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Avian infectious bronchitis is a highly contagious disease of the upper-respiratory tract caused by infectious bronchitis virus (IBV). Understanding the molecular mechanisms involved in the interaction between innate and adaptive immune responses to IBV infection is a crucial element for further improvements in strategies to control IB. To this end, two chicken lines, selected for high (L10H line) and low (L10L line) serum concentration of mannose-binding lectin (MBL) were studied. In total, 32 birds from each line were used. Sixteen birds from each line were infected with IBV and sixteen were left uninfected. Eight uninfected and infected birds from each line were euthanized at 1 and 3 weeks post infection. RNA sequencing was performed on spleen samples from all 64 birds and differential gene expression analysis was performed for four comparisons: L10L line versus L10H line for uninfected birds at weeks 1 and 3, respectively, and in the same way for infected birds. Functional analysis was performed using Gene Ontology (GO) Immune System Process terms specific for Gallus gallus.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26819139</PMID><DateCreated><Year>2016</Year><Month>01</Month><Day>28</Day></DateCreated><DateCompleted><Year>2016</Year><Month>12</Month><Day>13</Day></DateCompleted><DateRevised><Year>2017</Year><Month>02</Month><Day>20</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2164</ISSN><JournalIssue CitedMedium="Internet"><Volume>17</Volume><PubDate><Year>2016</Year><Month>Jan</Month><Day>27</Day></PubDate></JournalIssue><Title>BMC genomics</Title><ISOAbbreviation>BMC Genomics</ISOAbbreviation></Journal><ArticleTitle>RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations.</ArticleTitle><Pagination><MedlinePgn>82</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/s12864-016-2403-1</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Avian infectious bronchitis is a highly contagious disease of the upper-respiratory tract caused by infectious bronchitis virus (IBV). Understanding the molecular mechanisms involved in the interaction between innate and adaptive immune responses to IBV infection is a crucial element for further improvements in strategies to control IB. To this end, two chicken lines, selected for high (L10H line) and low (L10L line) serum concentration of mannose-binding lectin (MBL) were studied. In total, 32 birds from each line were used. Sixteen birds from each line were infected with IBV and sixteen were left uninfected. Eight uninfected and infected birds from each line were euthanized at 1 and 3 weeks post infection. RNA sequencing was performed on spleen samples from all 64 birds and differential gene expression analysis was performed for four comparisons: L10L line versus L10H line for uninfected birds at weeks 1 and 3, respectively, and in the same way for infected birds. Functional analysis was performed using Gene Ontology (GO) Immune System Process terms specific for Gallus gallus.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">Comparing uninfected L10H and L10L birds, we identified 1698 and 1424 differentially expressed (DE) genes at weeks 1 and 3, respectively. For the IBV-infected birds, 1934 and 866 DE genes were identified between the two lines at weeks 1 and 3, respectively. The two most enriched GO terms emerging from the comparison of uninfected birds between the two lines were "Lymphocyte activation involved in immune response" and "Somatic recombination of immunoglobulin genes involved in immune response" at weeks 1 and 3, respectively. When comparing IBV-infected birds between the two lines, the most enriched GO terms were "Alpha-beta T cell activation" and "Positive regulation of leukocyte activation" at weeks 1 and 3, respectively.</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">Healthy birds from the two lines showed significant differences in expression profiles for subsets of adaptive and innate immunity-related genes, whereas comparison of the IBV-infected birds from the two lines showed differences in expression of immunity-related genes involved in T cell activation and proliferation. The observed transcriptome differences between the two lines indicate that selection for MBL had influenced innate as well as adaptive immunity.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Hamzić</LastName><ForeName>Edin</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>UMR1313 Animal Genetics and Integrative Biology Unit, AgroParisTech, Université Paris-Saclay, 16 rue Claude Bernard, 75005, Paris, France. edin.hamzic@jouy.inra.fr.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>UMR1313 Animal Genetics and Integrative Biology Unit, INRA, Université Paris-Saclay, Domaine de Vilvert, 78350, Jouy-en-Josas, France. edin.hamzic@jouy.inra.fr.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Molecular Biology and Genetics, Center for Quantitative Genetics and Genomics, Aarhus University, Blichers Allé 20, P.O. Box 50, 8830, Tjele, Denmark. edin.hamzic@jouy.inra.fr.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kjærup</LastName><ForeName>Rikke Brødsgaard</ForeName><Initials>RB</Initials><AffiliationInfo><Affiliation>Department of Animal Science, Aarhus University, Blichers Allé 20, P.O. Box 50, 8830, Tjele, Denmark. rikke.kjaerup@anis.au.dk.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mach</LastName><ForeName>Núria</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>UMR1313 Animal Genetics and Integrative Biology Unit, INRA, Université Paris-Saclay, Domaine de Vilvert, 78350, Jouy-en-Josas, France. nuria.mach@jouy.inra.fr.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Minozzi</LastName><ForeName>Guilietta</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Parco Tecnologico Padano, Via Einstein, 26900, Lodi, Italy. giulietta.minozzi@unimi.it.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>University of Milan, DIVET, Via Celoria 10, 20133, Milan, Italy. giulietta.minozzi@unimi.it.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Strozzi</LastName><ForeName>Francesco</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Parco Tecnologico Padano, Via Einstein, 26900, Lodi, Italy. francesco.strozzi@ptp.it.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gualdi</LastName><ForeName>Valentina</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>Parco Tecnologico Padano, Via Einstein, 26900, Lodi, Italy. valentina.gualdi@ptp.it.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Williams</LastName><ForeName>John L</ForeName><Initials>JL</Initials><AffiliationInfo><Affiliation>Parco Tecnologico Padano, Via Einstein, 26900, Lodi, Italy. john.williams01@adelaide.edu.au.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>School of Animal and Veterinary Sciences, University of Adelaide, SA, 5371, Roseworthy, Australia. john.williams01@adelaide.edu.au.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Jun</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Cobb-Vantress Inc, US-412 Road, Siloam Springs, AR, 72761, USA. jun.chen@cobb-vantress.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wattrang</LastName><ForeName>Eva</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>National Veterinary Institute, Ulls väg 2B, 751 89, Uppsala, Sweden. eva.wattrang@sva.se.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Buitenhuis</LastName><ForeName>Bart</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Department of Molecular Biology and Genetics, Center for Quantitative Genetics and Genomics, Aarhus University, Blichers Allé 20, P.O. Box 50, 8830, Tjele, Denmark. bart.buitenhuis@mbg.au.dk.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Juul-Madsen</LastName><ForeName>Helle Risdahl</ForeName><Initials>HR</Initials><AffiliationInfo><Affiliation>Department of Animal Science, Aarhus University, Blichers Allé 20, P.O. Box 50, 8830, Tjele, Denmark. helle.juulmadsen@anis.au.dk.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dalgaard</LastName><ForeName>Tina Sørensen</ForeName><Initials>TS</Initials><AffiliationInfo><Affiliation>Department of Animal Science, Aarhus University, Blichers Allé 20, P.O. Box 50, 8830, Tjele, Denmark. tina.dalgaard@anis.au.dk.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>01</Month><Day>27</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>BMC Genomics</MedlineTA><NlmUniqueID>100965258</NlmUniqueID><ISSNLinking>1471-2164</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D037601">Mannose-Binding Lectin</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><CommentsCorrectionsList><CommentsCorrections RefType="Cites"><RefSource>Immunogenetics. 2013 Jun;65(6):461-71</RefSource><PMID Version="1">23455474</PMID></CommentsCorrections><CommentsCorrections 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MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002645" MajorTopicYN="N">Chickens</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018352" MajorTopicYN="N">Coronavirus Infections</DescriptorName><QualifierName UI="Q000503" MajorTopicYN="N">physiopathology</QualifierName><QualifierName UI="Q000662" MajorTopicYN="Y">veterinary</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001351" MajorTopicYN="N">Infectious bronchitis virus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D037601" MajorTopicYN="N">Mannose-Binding Lectin</DescriptorName><QualifierName UI="Q000097" MajorTopicYN="Y">blood</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017423" MajorTopicYN="N">Sequence Analysis, RNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D059467" MajorTopicYN="Y">Transcriptome</DescriptorName></MeshHeading></MeshHeadingList><OtherID Source="NLM">PMC4729133</OtherID></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year><Month>08</Month><Day>24</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2016</Year><Month>01</Month><Day>18</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2016</Year><Month>1</Month><Day>29</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2016</Year><Month>1</Month><Day>29</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2016</Year><Month>12</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">26819139</ArticleId><ArticleId IdType="doi">10.1186/s12864-016-2403-1</ArticleId><ArticleId IdType="pii">10.1186/s12864-016-2403-1</ArticleId><ArticleId 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