Overview of the interactive task in BioCreative V.
Identifieur interne : 001955 ( PubMed/Corpus ); précédent : 001954; suivant : 001956Overview of the interactive task in BioCreative V.
Auteurs : Qinghua Wang ; Shabbir S Abdul ; Lara Almeida ; Sophia Ananiadou ; Yalbi I. Balderas-Martínez ; Riza Batista-Navarro ; David Campos ; Lucy Chilton ; Hui-Jou Chou ; Gabriela Contreras ; Laurel Cooper ; Hong-Jie Dai ; Barbra Ferrell ; Juliane Fluck ; Socorro Gama-Castro ; Nancy George ; Georgios Gkoutos ; Afroza K. Irin ; Lars J. Jensen ; Silvia Jimenez ; Toni R. Jue ; Ingrid Keseler ; Sumit Madan ; Sérgio Matos ; Peter Mcquilton ; Marija Milacic ; Matthew Mort ; Jeyakumar Natarajan ; Evangelos Pafilis ; Emiliano Pereira ; Shruti Rao ; Fabio Rinaldi ; Karen Rothfels ; David Salgado ; Raquel M. Silva ; Onkar Singh ; Raymund Stefancsik ; Chu-Hsien Su ; Suresh Subramani ; Hamsa D. Tadepally ; Loukia Tsaprouni ; Nicole Vasilevsky ; Xiaodong Wang ; Andrew Chatr-Aryamontri ; Stanley J F. Laulederkind ; Sherri Matis-Mitchell ; Johanna Mcentyre ; Sandra Orchard ; Sangya Pundir ; Raul Rodriguez-Esteban ; Kimberly Van Auken ; Zhiyong Lu ; Mary Schaeffer ; Cathy H. Wu ; Lynette Hirschman ; Cecilia N. ArighiSource :
- Database : the journal of biological databases and curation [ 1758-0463 ] ; 2016.
Abstract
Fully automated text mining (TM) systems promote efficient literature searching, retrieval, and review but are not sufficient to produce ready-to-consume curated documents. These systems are not meant to replace biocurators, but instead to assist them in one or more literature curation steps. To do so, the user interface is an important aspect that needs to be considered for tool adoption. The BioCreative Interactive task (IAT) is a track designed for exploring user-system interactions, promoting development of useful TM tools, and providing a communication channel between the biocuration and the TM communities. In BioCreative V, the IAT track followed a format similar to previous interactive tracks, where the utility and usability of TM tools, as well as the generation of use cases, have been the focal points. The proposed curation tasks are user-centric and formally evaluated by biocurators. In BioCreative V IAT, seven TM systems and 43 biocurators participated. Two levels of user participation were offered to broaden curator involvement and obtain more feedback on usability aspects. The full level participation involved training on the system, curation of a set of documents with and without TM assistance, tracking of time-on-task, and completion of a user survey. The partial level participation was designed to focus on usability aspects of the interface and not the performance per se In this case, biocurators navigated the system by performing pre-designed tasks and then were asked whether they were able to achieve the task and the level of difficulty in completing the task. In this manuscript, we describe the development of the interactive task, from planning to execution and discuss major findings for the systems tested.Database URL: http://www.biocreative.org.
DOI: 10.1093/database/baw119
PubMed: 27589961
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pubmed:27589961Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Overview of the interactive task in BioCreative V.</title><author><name sortKey="Wang, Qinghua" sort="Wang, Qinghua" uniqKey="Wang Q" first="Qinghua" last="Wang">Qinghua Wang</name><affiliation><nlm:affiliation>Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, 19711, USA Department of Computer and Information Sciences, University of Delaware, Newark, DE, 19711, USA.</nlm:affiliation></affiliation></author><author><name sortKey="S Abdul, Shabbir" sort="S Abdul, Shabbir" uniqKey="S Abdul S" first="Shabbir" last="S Abdul">Shabbir S Abdul</name><affiliation><nlm:affiliation>International Centre of Health Information Technology, Taipei Medical University, Taipei, Taiwan.</nlm:affiliation></affiliation></author><author><name sortKey="Almeida, Lara" sort="Almeida, Lara" uniqKey="Almeida L" first="Lara" last="Almeida">Lara Almeida</name><affiliation><nlm:affiliation>DETI/IEETA, University of Aveiro, Campus Universitário de Santiago, Aveiro 3810-193, Portugal.</nlm:affiliation></affiliation></author><author><name sortKey="Ananiadou, Sophia" sort="Ananiadou, Sophia" uniqKey="Ananiadou S" first="Sophia" last="Ananiadou">Sophia Ananiadou</name><affiliation><nlm:affiliation>National Centre for Text Mining, University of Manchester, Manchester, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Balderas Martinez, Yalbi I" sort="Balderas Martinez, Yalbi I" uniqKey="Balderas Martinez Y" first="Yalbi I" last="Balderas-Martínez">Yalbi I. Balderas-Martínez</name><affiliation><nlm:affiliation>Facultad de Ciencias, Universidad Nacional Autónoma de México, 04510 Ciudad de México, México.</nlm:affiliation></affiliation></author><author><name sortKey="Batista Navarro, Riza" sort="Batista Navarro, Riza" uniqKey="Batista Navarro R" first="Riza" last="Batista-Navarro">Riza Batista-Navarro</name><affiliation><nlm:affiliation>National Centre for Text Mining, University of Manchester, Manchester, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Campos, David" sort="Campos, David" uniqKey="Campos D" first="David" last="Campos">David Campos</name><affiliation><nlm:affiliation>BMD Software, Aveiro, Portugal.</nlm:affiliation></affiliation></author><author><name sortKey="Chilton, Lucy" sort="Chilton, Lucy" uniqKey="Chilton L" first="Lucy" last="Chilton">Lucy Chilton</name><affiliation><nlm:affiliation>Northern Institute for Cancer Research, Newcastle University, New Castle, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Chou, Hui Jou" sort="Chou, Hui Jou" uniqKey="Chou H" first="Hui-Jou" last="Chou">Hui-Jou Chou</name><affiliation><nlm:affiliation>Rutgers University-Camden, Camden, NJ 08102, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Contreras, Gabriela" sort="Contreras, Gabriela" uniqKey="Contreras G" first="Gabriela" last="Contreras">Gabriela Contreras</name><affiliation><nlm:affiliation>Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, 04510 Ciudad de México, México.</nlm:affiliation></affiliation></author><author><name sortKey="Cooper, Laurel" sort="Cooper, Laurel" uniqKey="Cooper L" first="Laurel" last="Cooper">Laurel Cooper</name><affiliation><nlm:affiliation>Department of Botany and Plant Pathology, Oregon State University Corvallis, OR 97331, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Dai, Hong Jie" sort="Dai, Hong Jie" uniqKey="Dai H" first="Hong-Jie" last="Dai">Hong-Jie Dai</name><affiliation><nlm:affiliation>Department of Computer Science and Information Engineering, National Taitung University, Taitung, Taiwan.</nlm:affiliation></affiliation></author><author><name sortKey="Ferrell, Barbra" sort="Ferrell, Barbra" uniqKey="Ferrell B" first="Barbra" last="Ferrell">Barbra Ferrell</name><affiliation><nlm:affiliation>College of Agriculture and Natural Resources, University of Delaware, Newark, DE 19711, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Fluck, Juliane" sort="Fluck, Juliane" uniqKey="Fluck J" first="Juliane" last="Fluck">Juliane Fluck</name><affiliation><nlm:affiliation>Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, 53754 St. Augustin, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Gama Castro, Socorro" sort="Gama Castro, Socorro" uniqKey="Gama Castro S" first="Socorro" last="Gama-Castro">Socorro Gama-Castro</name><affiliation><nlm:affiliation>Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, 04510 Ciudad de México, México.</nlm:affiliation></affiliation></author><author><name sortKey="George, Nancy" sort="George, Nancy" uniqKey="George N" first="Nancy" last="George">Nancy George</name><affiliation><nlm:affiliation>SourceData, EMBO, Heidelberg, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Gkoutos, Georgios" sort="Gkoutos, Georgios" uniqKey="Gkoutos G" first="Georgios" last="Gkoutos">Georgios Gkoutos</name><affiliation><nlm:affiliation>College of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences, Centre for Computational Biology, University of Birmingham, Birmingham B15 2TT, UK Institute of Translational Medicine, University Hospitals Birmingham NHS Foundation Trust, Birmingham B15 2TT, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Irin, Afroza K" sort="Irin, Afroza K" uniqKey="Irin A" first="Afroza K" last="Irin">Afroza K. Irin</name><affiliation><nlm:affiliation>Life Science Informatics, University of Bonn, Bonn, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Jensen, Lars J" sort="Jensen, Lars J" uniqKey="Jensen L" first="Lars J" last="Jensen">Lars J. Jensen</name><affiliation><nlm:affiliation>Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Jimenez, Silvia" sort="Jimenez, Silvia" uniqKey="Jimenez S" first="Silvia" last="Jimenez">Silvia Jimenez</name><affiliation><nlm:affiliation>Blue Brain Project, École Polytechnique Fédérale de Lausanne (EPFL) Biotech Campus, Geneva, Switzerland.</nlm:affiliation></affiliation></author><author><name sortKey="Jue, Toni R" sort="Jue, Toni R" uniqKey="Jue T" first="Toni R" last="Jue">Toni R. Jue</name><affiliation><nlm:affiliation>Prince of Wales Clinical School, University of New South Wales NSW, Sydney, New South Wales, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Keseler, Ingrid" sort="Keseler, Ingrid" uniqKey="Keseler I" first="Ingrid" last="Keseler">Ingrid Keseler</name><affiliation><nlm:affiliation>SRI International, Menlo Park, CA 94025, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Madan, Sumit" sort="Madan, Sumit" uniqKey="Madan S" first="Sumit" last="Madan">Sumit Madan</name><affiliation><nlm:affiliation>Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, 53754 St. Augustin, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Matos, Sergio" sort="Matos, Sergio" uniqKey="Matos S" first="Sérgio" last="Matos">Sérgio Matos</name><affiliation><nlm:affiliation>DETI/IEETA, University of Aveiro, Campus Universitário de Santiago, Aveiro 3810-193, Portugal.</nlm:affiliation></affiliation></author><author><name sortKey="Mcquilton, Peter" sort="Mcquilton, Peter" uniqKey="Mcquilton P" first="Peter" last="Mcquilton">Peter Mcquilton</name><affiliation><nlm:affiliation>Oxford e-Research Centre, University of Oxford, Oxford, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Milacic, Marija" sort="Milacic, Marija" uniqKey="Milacic M" first="Marija" last="Milacic">Marija Milacic</name><affiliation><nlm:affiliation>Department of Informatics and Bio-Computing, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Mort, Matthew" sort="Mort, Matthew" uniqKey="Mort M" first="Matthew" last="Mort">Matthew Mort</name><affiliation><nlm:affiliation>HGMD, Institute of Medical Genetics, Cardiff University, Heath Park, Cardiff, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Natarajan, Jeyakumar" sort="Natarajan, Jeyakumar" uniqKey="Natarajan J" first="Jeyakumar" last="Natarajan">Jeyakumar Natarajan</name><affiliation><nlm:affiliation>Department of Bioinformatics, Bharathiar University, Coimbatore, Tamil Nadu, India.</nlm:affiliation></affiliation></author><author><name sortKey="Pafilis, Evangelos" sort="Pafilis, Evangelos" uniqKey="Pafilis E" first="Evangelos" last="Pafilis">Evangelos Pafilis</name><affiliation><nlm:affiliation>Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Heraklion, Crete, Greece.</nlm:affiliation></affiliation></author><author><name sortKey="Pereira, Emiliano" sort="Pereira, Emiliano" uniqKey="Pereira E" first="Emiliano" last="Pereira">Emiliano Pereira</name><affiliation><nlm:affiliation>Microbial Genomics and Bioinformatics Group, Max Planck Institute for Marine Microbiology, Bremen, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Rao, Shruti" sort="Rao, Shruti" uniqKey="Rao S" first="Shruti" last="Rao">Shruti Rao</name><affiliation><nlm:affiliation>Innovation Center for Biomedical Informatics (ICBI), Georgetown University, Washington, DC 20007, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Rinaldi, Fabio" sort="Rinaldi, Fabio" uniqKey="Rinaldi F" first="Fabio" last="Rinaldi">Fabio Rinaldi</name><affiliation><nlm:affiliation>Institute of Computational Linguistics, University of Zurich, Zurich, Switzerland.</nlm:affiliation></affiliation></author><author><name sortKey="Rothfels, Karen" sort="Rothfels, Karen" uniqKey="Rothfels K" first="Karen" last="Rothfels">Karen Rothfels</name><affiliation><nlm:affiliation>Department of Informatics and Bio-Computing, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Salgado, David" sort="Salgado, David" uniqKey="Salgado D" first="David" last="Salgado">David Salgado</name><affiliation><nlm:affiliation>GMGF, Aix-Marseille Universite, 13385 Marseille, France Inserm, UMR_S 910, 13385 Marseille, France.</nlm:affiliation></affiliation></author><author><name sortKey="Silva, Raquel M" sort="Silva, Raquel M" uniqKey="Silva R" first="Raquel M" last="Silva">Raquel M. Silva</name><affiliation><nlm:affiliation>Department of Medical Sciences, iBiMED & IEETA, University of Aveiro, 3810-193 Aveiro, Portugal.</nlm:affiliation></affiliation></author><author><name sortKey="Singh, Onkar" sort="Singh, Onkar" uniqKey="Singh O" first="Onkar" last="Singh">Onkar Singh</name><affiliation><nlm:affiliation>Taipei Medical University Graduate Institute of Biomedical informatics, Taipei, Taiwan.</nlm:affiliation></affiliation></author><author><name sortKey="Stefancsik, Raymund" sort="Stefancsik, Raymund" uniqKey="Stefancsik R" first="Raymund" last="Stefancsik">Raymund Stefancsik</name><affiliation><nlm:affiliation>Department of Genetics, University of Cambridge, Cambridge, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Su, Chu Hsien" sort="Su, Chu Hsien" uniqKey="Su C" first="Chu-Hsien" last="Su">Chu-Hsien Su</name><affiliation><nlm:affiliation>Institute of Information Science, Academia Sinica, Taipei, Taiwan.</nlm:affiliation></affiliation></author><author><name sortKey="Subramani, Suresh" sort="Subramani, Suresh" uniqKey="Subramani S" first="Suresh" last="Subramani">Suresh Subramani</name><affiliation><nlm:affiliation>Department of Bioinformatics, Bharathiar University, Coimbatore, Tamil Nadu, India.</nlm:affiliation></affiliation></author><author><name sortKey="Tadepally, Hamsa D" sort="Tadepally, Hamsa D" uniqKey="Tadepally H" first="Hamsa D" last="Tadepally">Hamsa D. Tadepally</name><affiliation><nlm:affiliation>Freelance Scientific Curator, Cleveland, OH, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Tsaprouni, Loukia" sort="Tsaprouni, Loukia" uniqKey="Tsaprouni L" first="Loukia" last="Tsaprouni">Loukia Tsaprouni</name><affiliation><nlm:affiliation>Institute of Sport and Physical Activity Research (ISPAR), University of Bedfordshire, Bedford, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Vasilevsky, Nicole" sort="Vasilevsky, Nicole" uniqKey="Vasilevsky N" first="Nicole" last="Vasilevsky">Nicole Vasilevsky</name><affiliation><nlm:affiliation>Ontology Development Group, Oregon Health & Science University, Portland, OR 97239, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Wang, Xiaodong" sort="Wang, Xiaodong" uniqKey="Wang X" first="Xiaodong" last="Wang">Xiaodong Wang</name><affiliation><nlm:affiliation>WormBase Consortium, Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Chatr Aryamontri, Andrew" sort="Chatr Aryamontri, Andrew" uniqKey="Chatr Aryamontri A" first="Andrew" last="Chatr-Aryamontri">Andrew Chatr-Aryamontri</name><affiliation><nlm:affiliation>Institute for Research in Immunology and Cancer, Université de Montréal, Montréal, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Laulederkind, Stanley J F" sort="Laulederkind, Stanley J F" uniqKey="Laulederkind S" first="Stanley J F" last="Laulederkind">Stanley J F. Laulederkind</name><affiliation><nlm:affiliation>Medical College of Wisconsin, Milwaukee, WI 53226, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Matis Mitchell, Sherri" sort="Matis Mitchell, Sherri" uniqKey="Matis Mitchell S" first="Sherri" last="Matis-Mitchell">Sherri Matis-Mitchell</name><affiliation><nlm:affiliation>Reed Elsevier, Philadelphia, PA 19103, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Mcentyre, Johanna" sort="Mcentyre, Johanna" uniqKey="Mcentyre J" first="Johanna" last="Mcentyre">Johanna Mcentyre</name><affiliation><nlm:affiliation>European Bioinformatics Institute (EMBL-EBI), Hinxton, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Orchard, Sandra" sort="Orchard, Sandra" uniqKey="Orchard S" first="Sandra" last="Orchard">Sandra Orchard</name><affiliation><nlm:affiliation>European Bioinformatics Institute (EMBL-EBI), Hinxton, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Pundir, Sangya" sort="Pundir, Sangya" uniqKey="Pundir S" first="Sangya" last="Pundir">Sangya Pundir</name><affiliation><nlm:affiliation>European Bioinformatics Institute (EMBL-EBI), Hinxton, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Rodriguez Esteban, Raul" sort="Rodriguez Esteban, Raul" uniqKey="Rodriguez Esteban R" first="Raul" last="Rodriguez-Esteban">Raul Rodriguez-Esteban</name><affiliation><nlm:affiliation>Roche Innovation Center Basel, F. Hoffmann-La Roche Ltd, Basel, Switzerland.</nlm:affiliation></affiliation></author><author><name sortKey="Van Auken, Kimberly" sort="Van Auken, Kimberly" uniqKey="Van Auken K" first="Kimberly" last="Van Auken">Kimberly Van Auken</name><affiliation><nlm:affiliation>WormBase Consortium, Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Lu, Zhiyong" sort="Lu, Zhiyong" uniqKey="Lu Z" first="Zhiyong" last="Lu">Zhiyong Lu</name><affiliation><nlm:affiliation>National Center for Biotechnology Information (NCBI), National Institutes of Health, Bethesda, MD 20894, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Schaeffer, Mary" sort="Schaeffer, Mary" uniqKey="Schaeffer M" first="Mary" last="Schaeffer">Mary Schaeffer</name><affiliation><nlm:affiliation>MaizeGDB USDA ARS and University of Missouri, Columbia, MO 65211, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Wu, Cathy H" sort="Wu, Cathy H" uniqKey="Wu C" first="Cathy H" last="Wu">Cathy H. Wu</name><affiliation><nlm:affiliation>Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, 19711, USA Department of Computer and Information Sciences, University of Delaware, Newark, DE, 19711, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Hirschman, Lynette" sort="Hirschman, Lynette" uniqKey="Hirschman L" first="Lynette" last="Hirschman">Lynette Hirschman</name><affiliation><nlm:affiliation>The MITRE Corporation, Bedford, MA 01730, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Arighi, Cecilia N" sort="Arighi, Cecilia N" uniqKey="Arighi C" first="Cecilia N" last="Arighi">Cecilia N. Arighi</name><affiliation><nlm:affiliation>Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, 19711, USA Department of Computer and Information Sciences, University of Delaware, Newark, DE, 19711, USA arighi@dbi.udel.edu.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2016">2016</date><idno type="RBID">pubmed:27589961</idno><idno type="pmid">27589961</idno><idno type="doi">10.1093/database/baw119</idno><idno type="wicri:Area/PubMed/Corpus">001955</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">001955</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Overview of the interactive task in BioCreative V.</title><author><name sortKey="Wang, Qinghua" sort="Wang, Qinghua" uniqKey="Wang Q" first="Qinghua" last="Wang">Qinghua Wang</name><affiliation><nlm:affiliation>Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, 19711, USA Department of Computer and Information Sciences, University of Delaware, Newark, DE, 19711, USA.</nlm:affiliation></affiliation></author><author><name sortKey="S Abdul, Shabbir" sort="S Abdul, Shabbir" uniqKey="S Abdul S" first="Shabbir" last="S Abdul">Shabbir S Abdul</name><affiliation><nlm:affiliation>International Centre of Health Information Technology, Taipei Medical University, Taipei, Taiwan.</nlm:affiliation></affiliation></author><author><name sortKey="Almeida, Lara" sort="Almeida, Lara" uniqKey="Almeida L" first="Lara" last="Almeida">Lara Almeida</name><affiliation><nlm:affiliation>DETI/IEETA, University of Aveiro, Campus Universitário de Santiago, Aveiro 3810-193, Portugal.</nlm:affiliation></affiliation></author><author><name sortKey="Ananiadou, Sophia" sort="Ananiadou, Sophia" uniqKey="Ananiadou S" first="Sophia" last="Ananiadou">Sophia Ananiadou</name><affiliation><nlm:affiliation>National Centre for Text Mining, University of Manchester, Manchester, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Balderas Martinez, Yalbi I" sort="Balderas Martinez, Yalbi I" uniqKey="Balderas Martinez Y" first="Yalbi I" last="Balderas-Martínez">Yalbi I. Balderas-Martínez</name><affiliation><nlm:affiliation>Facultad de Ciencias, Universidad Nacional Autónoma de México, 04510 Ciudad de México, México.</nlm:affiliation></affiliation></author><author><name sortKey="Batista Navarro, Riza" sort="Batista Navarro, Riza" uniqKey="Batista Navarro R" first="Riza" last="Batista-Navarro">Riza Batista-Navarro</name><affiliation><nlm:affiliation>National Centre for Text Mining, University of Manchester, Manchester, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Campos, David" sort="Campos, David" uniqKey="Campos D" first="David" last="Campos">David Campos</name><affiliation><nlm:affiliation>BMD Software, Aveiro, Portugal.</nlm:affiliation></affiliation></author><author><name sortKey="Chilton, Lucy" sort="Chilton, Lucy" uniqKey="Chilton L" first="Lucy" last="Chilton">Lucy Chilton</name><affiliation><nlm:affiliation>Northern Institute for Cancer Research, Newcastle University, New Castle, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Chou, Hui Jou" sort="Chou, Hui Jou" uniqKey="Chou H" first="Hui-Jou" last="Chou">Hui-Jou Chou</name><affiliation><nlm:affiliation>Rutgers University-Camden, Camden, NJ 08102, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Contreras, Gabriela" sort="Contreras, Gabriela" uniqKey="Contreras G" first="Gabriela" last="Contreras">Gabriela Contreras</name><affiliation><nlm:affiliation>Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, 04510 Ciudad de México, México.</nlm:affiliation></affiliation></author><author><name sortKey="Cooper, Laurel" sort="Cooper, Laurel" uniqKey="Cooper L" first="Laurel" last="Cooper">Laurel Cooper</name><affiliation><nlm:affiliation>Department of Botany and Plant Pathology, Oregon State University Corvallis, OR 97331, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Dai, Hong Jie" sort="Dai, Hong Jie" uniqKey="Dai H" first="Hong-Jie" last="Dai">Hong-Jie Dai</name><affiliation><nlm:affiliation>Department of Computer Science and Information Engineering, National Taitung University, Taitung, Taiwan.</nlm:affiliation></affiliation></author><author><name sortKey="Ferrell, Barbra" sort="Ferrell, Barbra" uniqKey="Ferrell B" first="Barbra" last="Ferrell">Barbra Ferrell</name><affiliation><nlm:affiliation>College of Agriculture and Natural Resources, University of Delaware, Newark, DE 19711, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Fluck, Juliane" sort="Fluck, Juliane" uniqKey="Fluck J" first="Juliane" last="Fluck">Juliane Fluck</name><affiliation><nlm:affiliation>Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, 53754 St. Augustin, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Gama Castro, Socorro" sort="Gama Castro, Socorro" uniqKey="Gama Castro S" first="Socorro" last="Gama-Castro">Socorro Gama-Castro</name><affiliation><nlm:affiliation>Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, 04510 Ciudad de México, México.</nlm:affiliation></affiliation></author><author><name sortKey="George, Nancy" sort="George, Nancy" uniqKey="George N" first="Nancy" last="George">Nancy George</name><affiliation><nlm:affiliation>SourceData, EMBO, Heidelberg, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Gkoutos, Georgios" sort="Gkoutos, Georgios" uniqKey="Gkoutos G" first="Georgios" last="Gkoutos">Georgios Gkoutos</name><affiliation><nlm:affiliation>College of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences, Centre for Computational Biology, University of Birmingham, Birmingham B15 2TT, UK Institute of Translational Medicine, University Hospitals Birmingham NHS Foundation Trust, Birmingham B15 2TT, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Irin, Afroza K" sort="Irin, Afroza K" uniqKey="Irin A" first="Afroza K" last="Irin">Afroza K. Irin</name><affiliation><nlm:affiliation>Life Science Informatics, University of Bonn, Bonn, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Jensen, Lars J" sort="Jensen, Lars J" uniqKey="Jensen L" first="Lars J" last="Jensen">Lars J. Jensen</name><affiliation><nlm:affiliation>Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Jimenez, Silvia" sort="Jimenez, Silvia" uniqKey="Jimenez S" first="Silvia" last="Jimenez">Silvia Jimenez</name><affiliation><nlm:affiliation>Blue Brain Project, École Polytechnique Fédérale de Lausanne (EPFL) Biotech Campus, Geneva, Switzerland.</nlm:affiliation></affiliation></author><author><name sortKey="Jue, Toni R" sort="Jue, Toni R" uniqKey="Jue T" first="Toni R" last="Jue">Toni R. Jue</name><affiliation><nlm:affiliation>Prince of Wales Clinical School, University of New South Wales NSW, Sydney, New South Wales, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Keseler, Ingrid" sort="Keseler, Ingrid" uniqKey="Keseler I" first="Ingrid" last="Keseler">Ingrid Keseler</name><affiliation><nlm:affiliation>SRI International, Menlo Park, CA 94025, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Madan, Sumit" sort="Madan, Sumit" uniqKey="Madan S" first="Sumit" last="Madan">Sumit Madan</name><affiliation><nlm:affiliation>Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, 53754 St. Augustin, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Matos, Sergio" sort="Matos, Sergio" uniqKey="Matos S" first="Sérgio" last="Matos">Sérgio Matos</name><affiliation><nlm:affiliation>DETI/IEETA, University of Aveiro, Campus Universitário de Santiago, Aveiro 3810-193, Portugal.</nlm:affiliation></affiliation></author><author><name sortKey="Mcquilton, Peter" sort="Mcquilton, Peter" uniqKey="Mcquilton P" first="Peter" last="Mcquilton">Peter Mcquilton</name><affiliation><nlm:affiliation>Oxford e-Research Centre, University of Oxford, Oxford, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Milacic, Marija" sort="Milacic, Marija" uniqKey="Milacic M" first="Marija" last="Milacic">Marija Milacic</name><affiliation><nlm:affiliation>Department of Informatics and Bio-Computing, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Mort, Matthew" sort="Mort, Matthew" uniqKey="Mort M" first="Matthew" last="Mort">Matthew Mort</name><affiliation><nlm:affiliation>HGMD, Institute of Medical Genetics, Cardiff University, Heath Park, Cardiff, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Natarajan, Jeyakumar" sort="Natarajan, Jeyakumar" uniqKey="Natarajan J" first="Jeyakumar" last="Natarajan">Jeyakumar Natarajan</name><affiliation><nlm:affiliation>Department of Bioinformatics, Bharathiar University, Coimbatore, Tamil Nadu, India.</nlm:affiliation></affiliation></author><author><name sortKey="Pafilis, Evangelos" sort="Pafilis, Evangelos" uniqKey="Pafilis E" first="Evangelos" last="Pafilis">Evangelos Pafilis</name><affiliation><nlm:affiliation>Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Heraklion, Crete, Greece.</nlm:affiliation></affiliation></author><author><name sortKey="Pereira, Emiliano" sort="Pereira, Emiliano" uniqKey="Pereira E" first="Emiliano" last="Pereira">Emiliano Pereira</name><affiliation><nlm:affiliation>Microbial Genomics and Bioinformatics Group, Max Planck Institute for Marine Microbiology, Bremen, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Rao, Shruti" sort="Rao, Shruti" uniqKey="Rao S" first="Shruti" last="Rao">Shruti Rao</name><affiliation><nlm:affiliation>Innovation Center for Biomedical Informatics (ICBI), Georgetown University, Washington, DC 20007, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Rinaldi, Fabio" sort="Rinaldi, Fabio" uniqKey="Rinaldi F" first="Fabio" last="Rinaldi">Fabio Rinaldi</name><affiliation><nlm:affiliation>Institute of Computational Linguistics, University of Zurich, Zurich, Switzerland.</nlm:affiliation></affiliation></author><author><name sortKey="Rothfels, Karen" sort="Rothfels, Karen" uniqKey="Rothfels K" first="Karen" last="Rothfels">Karen Rothfels</name><affiliation><nlm:affiliation>Department of Informatics and Bio-Computing, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Salgado, David" sort="Salgado, David" uniqKey="Salgado D" first="David" last="Salgado">David Salgado</name><affiliation><nlm:affiliation>GMGF, Aix-Marseille Universite, 13385 Marseille, France Inserm, UMR_S 910, 13385 Marseille, France.</nlm:affiliation></affiliation></author><author><name sortKey="Silva, Raquel M" sort="Silva, Raquel M" uniqKey="Silva R" first="Raquel M" last="Silva">Raquel M. Silva</name><affiliation><nlm:affiliation>Department of Medical Sciences, iBiMED & IEETA, University of Aveiro, 3810-193 Aveiro, Portugal.</nlm:affiliation></affiliation></author><author><name sortKey="Singh, Onkar" sort="Singh, Onkar" uniqKey="Singh O" first="Onkar" last="Singh">Onkar Singh</name><affiliation><nlm:affiliation>Taipei Medical University Graduate Institute of Biomedical informatics, Taipei, Taiwan.</nlm:affiliation></affiliation></author><author><name sortKey="Stefancsik, Raymund" sort="Stefancsik, Raymund" uniqKey="Stefancsik R" first="Raymund" last="Stefancsik">Raymund Stefancsik</name><affiliation><nlm:affiliation>Department of Genetics, University of Cambridge, Cambridge, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Su, Chu Hsien" sort="Su, Chu Hsien" uniqKey="Su C" first="Chu-Hsien" last="Su">Chu-Hsien Su</name><affiliation><nlm:affiliation>Institute of Information Science, Academia Sinica, Taipei, Taiwan.</nlm:affiliation></affiliation></author><author><name sortKey="Subramani, Suresh" sort="Subramani, Suresh" uniqKey="Subramani S" first="Suresh" last="Subramani">Suresh Subramani</name><affiliation><nlm:affiliation>Department of Bioinformatics, Bharathiar University, Coimbatore, Tamil Nadu, India.</nlm:affiliation></affiliation></author><author><name sortKey="Tadepally, Hamsa D" sort="Tadepally, Hamsa D" uniqKey="Tadepally H" first="Hamsa D" last="Tadepally">Hamsa D. Tadepally</name><affiliation><nlm:affiliation>Freelance Scientific Curator, Cleveland, OH, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Tsaprouni, Loukia" sort="Tsaprouni, Loukia" uniqKey="Tsaprouni L" first="Loukia" last="Tsaprouni">Loukia Tsaprouni</name><affiliation><nlm:affiliation>Institute of Sport and Physical Activity Research (ISPAR), University of Bedfordshire, Bedford, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Vasilevsky, Nicole" sort="Vasilevsky, Nicole" uniqKey="Vasilevsky N" first="Nicole" last="Vasilevsky">Nicole Vasilevsky</name><affiliation><nlm:affiliation>Ontology Development Group, Oregon Health & Science University, Portland, OR 97239, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Wang, Xiaodong" sort="Wang, Xiaodong" uniqKey="Wang X" first="Xiaodong" last="Wang">Xiaodong Wang</name><affiliation><nlm:affiliation>WormBase Consortium, Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Chatr Aryamontri, Andrew" sort="Chatr Aryamontri, Andrew" uniqKey="Chatr Aryamontri A" first="Andrew" last="Chatr-Aryamontri">Andrew Chatr-Aryamontri</name><affiliation><nlm:affiliation>Institute for Research in Immunology and Cancer, Université de Montréal, Montréal, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Laulederkind, Stanley J F" sort="Laulederkind, Stanley J F" uniqKey="Laulederkind S" first="Stanley J F" last="Laulederkind">Stanley J F. Laulederkind</name><affiliation><nlm:affiliation>Medical College of Wisconsin, Milwaukee, WI 53226, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Matis Mitchell, Sherri" sort="Matis Mitchell, Sherri" uniqKey="Matis Mitchell S" first="Sherri" last="Matis-Mitchell">Sherri Matis-Mitchell</name><affiliation><nlm:affiliation>Reed Elsevier, Philadelphia, PA 19103, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Mcentyre, Johanna" sort="Mcentyre, Johanna" uniqKey="Mcentyre J" first="Johanna" last="Mcentyre">Johanna Mcentyre</name><affiliation><nlm:affiliation>European Bioinformatics Institute (EMBL-EBI), Hinxton, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Orchard, Sandra" sort="Orchard, Sandra" uniqKey="Orchard S" first="Sandra" last="Orchard">Sandra Orchard</name><affiliation><nlm:affiliation>European Bioinformatics Institute (EMBL-EBI), Hinxton, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Pundir, Sangya" sort="Pundir, Sangya" uniqKey="Pundir S" first="Sangya" last="Pundir">Sangya Pundir</name><affiliation><nlm:affiliation>European Bioinformatics Institute (EMBL-EBI), Hinxton, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Rodriguez Esteban, Raul" sort="Rodriguez Esteban, Raul" uniqKey="Rodriguez Esteban R" first="Raul" last="Rodriguez-Esteban">Raul Rodriguez-Esteban</name><affiliation><nlm:affiliation>Roche Innovation Center Basel, F. Hoffmann-La Roche Ltd, Basel, Switzerland.</nlm:affiliation></affiliation></author><author><name sortKey="Van Auken, Kimberly" sort="Van Auken, Kimberly" uniqKey="Van Auken K" first="Kimberly" last="Van Auken">Kimberly Van Auken</name><affiliation><nlm:affiliation>WormBase Consortium, Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Lu, Zhiyong" sort="Lu, Zhiyong" uniqKey="Lu Z" first="Zhiyong" last="Lu">Zhiyong Lu</name><affiliation><nlm:affiliation>National Center for Biotechnology Information (NCBI), National Institutes of Health, Bethesda, MD 20894, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Schaeffer, Mary" sort="Schaeffer, Mary" uniqKey="Schaeffer M" first="Mary" last="Schaeffer">Mary Schaeffer</name><affiliation><nlm:affiliation>MaizeGDB USDA ARS and University of Missouri, Columbia, MO 65211, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Wu, Cathy H" sort="Wu, Cathy H" uniqKey="Wu C" first="Cathy H" last="Wu">Cathy H. Wu</name><affiliation><nlm:affiliation>Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, 19711, USA Department of Computer and Information Sciences, University of Delaware, Newark, DE, 19711, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Hirschman, Lynette" sort="Hirschman, Lynette" uniqKey="Hirschman L" first="Lynette" last="Hirschman">Lynette Hirschman</name><affiliation><nlm:affiliation>The MITRE Corporation, Bedford, MA 01730, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Arighi, Cecilia N" sort="Arighi, Cecilia N" uniqKey="Arighi C" first="Cecilia N" last="Arighi">Cecilia N. Arighi</name><affiliation><nlm:affiliation>Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, 19711, USA Department of Computer and Information Sciences, University of Delaware, Newark, DE, 19711, USA arighi@dbi.udel.edu.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Database : the journal of biological databases and curation</title><idno type="eISSN">1758-0463</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Fully automated text mining (TM) systems promote efficient literature searching, retrieval, and review but are not sufficient to produce ready-to-consume curated documents. These systems are not meant to replace biocurators, but instead to assist them in one or more literature curation steps. To do so, the user interface is an important aspect that needs to be considered for tool adoption. The BioCreative Interactive task (IAT) is a track designed for exploring user-system interactions, promoting development of useful TM tools, and providing a communication channel between the biocuration and the TM communities. In BioCreative V, the IAT track followed a format similar to previous interactive tracks, where the utility and usability of TM tools, as well as the generation of use cases, have been the focal points. The proposed curation tasks are user-centric and formally evaluated by biocurators. In BioCreative V IAT, seven TM systems and 43 biocurators participated. Two levels of user participation were offered to broaden curator involvement and obtain more feedback on usability aspects. The full level participation involved training on the system, curation of a set of documents with and without TM assistance, tracking of time-on-task, and completion of a user survey. The partial level participation was designed to focus on usability aspects of the interface and not the performance per se In this case, biocurators navigated the system by performing pre-designed tasks and then were asked whether they were able to achieve the task and the level of difficulty in completing the task. In this manuscript, we describe the development of the interactive task, from planning to execution and discuss major findings for the systems tested.Database URL: http://www.biocreative.org.</div></front></TEI><pubmed><MedlineCitation Status="In-Process" Owner="NLM"><PMID Version="1">27589961</PMID><DateCreated><Year>2016</Year><Month>09</Month><Day>03</Day></DateCreated><DateRevised><Year>2017</Year><Month>11</Month><Day>02</Day></DateRevised><Article PubModel="Electronic-Print"><Journal><ISSN IssnType="Electronic">1758-0463</ISSN><JournalIssue CitedMedium="Internet"><Volume>2016</Volume><PubDate><Year>2016</Year></PubDate></JournalIssue><Title>Database : the journal of biological databases and curation</Title><ISOAbbreviation>Database (Oxford)</ISOAbbreviation></Journal><ArticleTitle>Overview of the interactive task in BioCreative V.</ArticleTitle><ELocationID EIdType="doi" ValidYN="Y">10.1093/database/baw119</ELocationID><ELocationID EIdType="pii" ValidYN="Y">baw119</ELocationID><Abstract><AbstractText>Fully automated text mining (TM) systems promote efficient literature searching, retrieval, and review but are not sufficient to produce ready-to-consume curated documents. These systems are not meant to replace biocurators, but instead to assist them in one or more literature curation steps. To do so, the user interface is an important aspect that needs to be considered for tool adoption. The BioCreative Interactive task (IAT) is a track designed for exploring user-system interactions, promoting development of useful TM tools, and providing a communication channel between the biocuration and the TM communities. In BioCreative V, the IAT track followed a format similar to previous interactive tracks, where the utility and usability of TM tools, as well as the generation of use cases, have been the focal points. The proposed curation tasks are user-centric and formally evaluated by biocurators. In BioCreative V IAT, seven TM systems and 43 biocurators participated. Two levels of user participation were offered to broaden curator involvement and obtain more feedback on usability aspects. The full level participation involved training on the system, curation of a set of documents with and without TM assistance, tracking of time-on-task, and completion of a user survey. The partial level participation was designed to focus on usability aspects of the interface and not the performance per se In this case, biocurators navigated the system by performing pre-designed tasks and then were asked whether they were able to achieve the task and the level of difficulty in completing the task. In this manuscript, we describe the development of the interactive task, from planning to execution and discuss major findings for the systems tested.Database URL: http://www.biocreative.org.</AbstractText><CopyrightInformation>Published by Oxford University Press 2016. This work is written by US Government employees and is in the public domain in the US.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Qinghua</ForeName><Initials>Q</Initials><AffiliationInfo><Affiliation>Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, 19711, USA Department of Computer and Information Sciences, University of Delaware, Newark, DE, 19711, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>S Abdul</LastName><ForeName>Shabbir</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>International Centre of Health Information Technology, Taipei Medical University, Taipei, Taiwan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Almeida</LastName><ForeName>Lara</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>DETI/IEETA, University of Aveiro, Campus Universitário de Santiago, Aveiro 3810-193, Portugal.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ananiadou</LastName><ForeName>Sophia</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>National Centre for Text Mining, University of Manchester, Manchester, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Balderas-Martínez</LastName><ForeName>Yalbi I</ForeName><Initials>YI</Initials><AffiliationInfo><Affiliation>Facultad de Ciencias, Universidad Nacional Autónoma de México, 04510 Ciudad de México, México.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Batista-Navarro</LastName><ForeName>Riza</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>National Centre for Text Mining, University of Manchester, Manchester, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Campos</LastName><ForeName>David</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>BMD Software, Aveiro, Portugal.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chilton</LastName><ForeName>Lucy</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Northern Institute for Cancer Research, Newcastle University, New Castle, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chou</LastName><ForeName>Hui-Jou</ForeName><Initials>HJ</Initials><AffiliationInfo><Affiliation>Rutgers University-Camden, Camden, NJ 08102, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Contreras</LastName><ForeName>Gabriela</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, 04510 Ciudad de México, México.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cooper</LastName><ForeName>Laurel</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Department of Botany and Plant Pathology, Oregon State University Corvallis, OR 97331, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dai</LastName><ForeName>Hong-Jie</ForeName><Initials>HJ</Initials><AffiliationInfo><Affiliation>Department of Computer Science and Information Engineering, National Taitung University, Taitung, Taiwan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ferrell</LastName><ForeName>Barbra</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>College of Agriculture and Natural Resources, University of Delaware, Newark, DE 19711, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fluck</LastName><ForeName>Juliane</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, 53754 St. Augustin, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gama-Castro</LastName><ForeName>Socorro</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, 04510 Ciudad de México, México.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>George</LastName><ForeName>Nancy</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>SourceData, EMBO, Heidelberg, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gkoutos</LastName><ForeName>Georgios</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>College of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences, Centre for Computational Biology, University of Birmingham, Birmingham B15 2TT, UK Institute of Translational Medicine, University Hospitals Birmingham NHS Foundation Trust, Birmingham B15 2TT, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Irin</LastName><ForeName>Afroza K</ForeName><Initials>AK</Initials><AffiliationInfo><Affiliation>Life Science Informatics, University of Bonn, Bonn, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jensen</LastName><ForeName>Lars J</ForeName><Initials>LJ</Initials><AffiliationInfo><Affiliation>Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jimenez</LastName><ForeName>Silvia</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Blue Brain Project, École Polytechnique Fédérale de Lausanne (EPFL) Biotech Campus, Geneva, Switzerland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jue</LastName><ForeName>Toni R</ForeName><Initials>TR</Initials><AffiliationInfo><Affiliation>Prince of Wales Clinical School, University of New South Wales NSW, Sydney, New South Wales, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Keseler</LastName><ForeName>Ingrid</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>SRI International, Menlo Park, CA 94025, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Madan</LastName><ForeName>Sumit</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, 53754 St. Augustin, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Matos</LastName><ForeName>Sérgio</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>DETI/IEETA, University of Aveiro, Campus Universitário de Santiago, Aveiro 3810-193, Portugal.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>McQuilton</LastName><ForeName>Peter</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Oxford e-Research Centre, University of Oxford, Oxford, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Milacic</LastName><ForeName>Marija</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Informatics and Bio-Computing, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mort</LastName><ForeName>Matthew</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>HGMD, Institute of Medical Genetics, Cardiff University, Heath Park, Cardiff, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Natarajan</LastName><ForeName>Jeyakumar</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Department of Bioinformatics, Bharathiar University, Coimbatore, Tamil Nadu, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pafilis</LastName><ForeName>Evangelos</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Heraklion, Crete, Greece.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pereira</LastName><ForeName>Emiliano</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Microbial Genomics and Bioinformatics Group, Max Planck Institute for Marine Microbiology, Bremen, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rao</LastName><ForeName>Shruti</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Innovation Center for Biomedical Informatics (ICBI), Georgetown University, Washington, DC 20007, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rinaldi</LastName><ForeName>Fabio</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Institute of Computational Linguistics, University of Zurich, Zurich, Switzerland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rothfels</LastName><ForeName>Karen</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Department of Informatics and Bio-Computing, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Salgado</LastName><ForeName>David</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>GMGF, Aix-Marseille Universite, 13385 Marseille, France Inserm, UMR_S 910, 13385 Marseille, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Silva</LastName><ForeName>Raquel M</ForeName><Initials>RM</Initials><AffiliationInfo><Affiliation>Department of Medical Sciences, iBiMED & IEETA, University of Aveiro, 3810-193 Aveiro, Portugal.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Singh</LastName><ForeName>Onkar</ForeName><Initials>O</Initials><AffiliationInfo><Affiliation>Taipei Medical University Graduate Institute of Biomedical informatics, Taipei, Taiwan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Stefancsik</LastName><ForeName>Raymund</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Department of Genetics, University of Cambridge, Cambridge, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Su</LastName><ForeName>Chu-Hsien</ForeName><Initials>CH</Initials><AffiliationInfo><Affiliation>Institute of Information Science, Academia Sinica, Taipei, Taiwan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Subramani</LastName><ForeName>Suresh</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Department of Bioinformatics, Bharathiar University, Coimbatore, Tamil Nadu, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tadepally</LastName><ForeName>Hamsa D</ForeName><Initials>HD</Initials><AffiliationInfo><Affiliation>Freelance Scientific Curator, Cleveland, OH, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tsaprouni</LastName><ForeName>Loukia</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Institute of Sport and Physical Activity Research (ISPAR), University of Bedfordshire, Bedford, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Vasilevsky</LastName><ForeName>Nicole</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>Ontology Development Group, Oregon Health & Science University, Portland, OR 97239, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Xiaodong</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>WormBase Consortium, Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chatr-Aryamontri</LastName><ForeName>Andrew</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Institute for Research in Immunology and Cancer, Université de Montréal, Montréal, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Laulederkind</LastName><ForeName>Stanley J F</ForeName><Initials>SJ</Initials><AffiliationInfo><Affiliation>Medical College of Wisconsin, Milwaukee, WI 53226, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Matis-Mitchell</LastName><ForeName>Sherri</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Reed Elsevier, Philadelphia, PA 19103, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>McEntyre</LastName><ForeName>Johanna</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>European Bioinformatics Institute (EMBL-EBI), Hinxton, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Orchard</LastName><ForeName>Sandra</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>European Bioinformatics Institute (EMBL-EBI), Hinxton, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pundir</LastName><ForeName>Sangya</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>European Bioinformatics Institute (EMBL-EBI), Hinxton, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rodriguez-Esteban</LastName><ForeName>Raul</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Roche Innovation Center Basel, F. 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H</ForeName><Initials>CH</Initials><AffiliationInfo><Affiliation>Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, 19711, USA Department of Computer and Information Sciences, University of Delaware, Newark, DE, 19711, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hirschman</LastName><ForeName>Lynette</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>The MITRE Corporation, Bedford, MA 01730, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Arighi</LastName><ForeName>Cecilia N</ForeName><Initials>CN</Initials><AffiliationInfo><Affiliation>Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, 19711, USA Department of Computer and Information Sciences, University of Delaware, Newark, DE, 19711, USA arighi@dbi.udel.edu.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>R13 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Version="1">26157623</PMID></CommentsCorrections></CommentsCorrectionsList><OtherID Source="NLM">PMC5009325</OtherID></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2016</Year><Month>04</Month><Day>04</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2016</Year><Month>07</Month><Day>28</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2016</Year><Month>9</Month><Day>4</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2016</Year><Month>9</Month><Day>4</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2016</Year><Month>9</Month><Day>4</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">27589961</ArticleId><ArticleId IdType="pii">baw119</ArticleId><ArticleId IdType="doi">10.1093/database/baw119</ArticleId><ArticleId 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