Ongoing geographical spread of Tomato yellow leaf curl virus.
Identifieur interne : 001613 ( PubMed/Corpus ); précédent : 001612; suivant : 001614Ongoing geographical spread of Tomato yellow leaf curl virus.
Auteurs : Batsirai Mabvakure ; Darren P. Martin ; Simona Kraberger ; Leendert Cloete ; Sharon Van Brunschot ; Andrew D W. Geering ; John E. Thomas ; Kaveh Bananej ; Jean-Michel Lett ; Pierre Lefeuvre ; Arvind Varsani ; Gordon W. HarkinsSource :
- Virology [ 1096-0341 ] ; 2016.
English descriptors
- KwdEn :
- MESH :
- classification : Begomovirus.
- genetics : Begomovirus.
- virology : Plant Diseases.
- Bayes Theorem, Evolution, Molecular, Genome, Viral, Mutation, Phylogeny, Phylogeography, Recombination, Genetic.
Abstract
Tomato yellow leaf curl virus (TYLCV) seriously impacts tomato production throughout tropical and sub-tropical regions of the world. It has a broad geographical distribution and continues to spread to new regions in the Indian and Pacific Oceans including Australia, New Caledonia and Mauritius. We undertook a temporally-scaled, phylogeographic analysis of all publicly available, full genome sequences of TYLCV, together with 70 new genome sequences from Australia, Iran and Mauritius. This revealed that whereas epidemics in Australia and China likely originated through multiple independent viral introductions from the East-Asian region around Japan and Korea, the New Caledonian epidemic was seeded by a variant from the Western Mediterranean region and the Mauritian epidemic by a variant from the neighbouring island of Reunion. Finally, we show that inter-continental scale movements of TYLCV to East Asia have, at least temporarily, ceased, whereas long-distance movements to the Americas and Australia are probably still ongoing.
DOI: 10.1016/j.virol.2016.08.033
PubMed: 27619929
Links to Exploration step
pubmed:27619929Le document en format XML
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<author><name sortKey="Bananej, Kaveh" sort="Bananej, Kaveh" uniqKey="Bananej K" first="Kaveh" last="Bananej">Kaveh Bananej</name>
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<author><name sortKey="Lefeuvre, Pierre" sort="Lefeuvre, Pierre" uniqKey="Lefeuvre P" first="Pierre" last="Lefeuvre">Pierre Lefeuvre</name>
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</affiliation>
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</affiliation>
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<author><name sortKey="Harkins, Gordon W" sort="Harkins, Gordon W" uniqKey="Harkins G" first="Gordon W" last="Harkins">Gordon W. Harkins</name>
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<term>Genome, Viral</term>
<term>Mutation</term>
<term>Phylogeny</term>
<term>Phylogeography</term>
<term>Plant Diseases (virology)</term>
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<front><div type="abstract" xml:lang="en">Tomato yellow leaf curl virus (TYLCV) seriously impacts tomato production throughout tropical and sub-tropical regions of the world. It has a broad geographical distribution and continues to spread to new regions in the Indian and Pacific Oceans including Australia, New Caledonia and Mauritius. We undertook a temporally-scaled, phylogeographic analysis of all publicly available, full genome sequences of TYLCV, together with 70 new genome sequences from Australia, Iran and Mauritius. This revealed that whereas epidemics in Australia and China likely originated through multiple independent viral introductions from the East-Asian region around Japan and Korea, the New Caledonian epidemic was seeded by a variant from the Western Mediterranean region and the Mauritian epidemic by a variant from the neighbouring island of Reunion. Finally, we show that inter-continental scale movements of TYLCV to East Asia have, at least temporarily, ceased, whereas long-distance movements to the Americas and Australia are probably still ongoing.</div>
</front>
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<Abstract><AbstractText>Tomato yellow leaf curl virus (TYLCV) seriously impacts tomato production throughout tropical and sub-tropical regions of the world. It has a broad geographical distribution and continues to spread to new regions in the Indian and Pacific Oceans including Australia, New Caledonia and Mauritius. We undertook a temporally-scaled, phylogeographic analysis of all publicly available, full genome sequences of TYLCV, together with 70 new genome sequences from Australia, Iran and Mauritius. This revealed that whereas epidemics in Australia and China likely originated through multiple independent viral introductions from the East-Asian region around Japan and Korea, the New Caledonian epidemic was seeded by a variant from the Western Mediterranean region and the Mauritian epidemic by a variant from the neighbouring island of Reunion. Finally, we show that inter-continental scale movements of TYLCV to East Asia have, at least temporarily, ceased, whereas long-distance movements to the Americas and Australia are probably still ongoing.</AbstractText>
<CopyrightInformation>Copyright © 2016 Elsevier Inc. All rights reserved.</CopyrightInformation>
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<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Mabvakure</LastName>
<ForeName>Batsirai</ForeName>
<Initials>B</Initials>
<AffiliationInfo><Affiliation>South African National Bioinformatics Institute, University of the Western Cape, Bellville 7535, South Africa.</Affiliation>
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<Author ValidYN="Y"><LastName>Martin</LastName>
<ForeName>Darren P</ForeName>
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</Author>
<Author ValidYN="Y"><LastName>van Brunschot</LastName>
<ForeName>Sharon</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>School of Biological Sciences, The University of Queensland, Brisbane, Queensland 4072, Australia; The University of Queensland, Queensland Alliance for Agriculture and Food Innovation, Ecosciences Precinct, GPO Box 267, Brisbane, QLD 4001, Australia.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Geering</LastName>
<ForeName>Andrew D W</ForeName>
<Initials>ADW</Initials>
<AffiliationInfo><Affiliation>The University of Queensland, Queensland Alliance for Agriculture and Food Innovation, Ecosciences Precinct, GPO Box 267, Brisbane, QLD 4001, Australia.</Affiliation>
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<ForeName>John E</ForeName>
<Initials>JE</Initials>
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<ForeName>Arvind</ForeName>
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<MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName>
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