Large-Scale Phylogenomic Analysis Reveals the Complex Evolutionary History of Rabies Virus in Multiple Carnivore Hosts.
Identifieur interne : 001409 ( PubMed/Corpus ); précédent : 001408; suivant : 001410Large-Scale Phylogenomic Analysis Reveals the Complex Evolutionary History of Rabies Virus in Multiple Carnivore Hosts.
Auteurs : Cécile Troupin ; Laurent Dacheux ; Marion Tanguy ; Claude Sabeta ; Hervé Blanc ; Christiane Bouchier ; Marco Vignuzzi ; Sebastián Duchene ; Edward C. Holmes ; Hervé BourhySource :
- PLoS pathogens [ 1553-7374 ] ; 2016.
English descriptors
- KwdEn :
- Animals, Animals, Wild (virology), Biological Evolution, Carnivora, Genome, Viral, High-Throughput Nucleotide Sequencing, Host-Pathogen Interactions (physiology), Humans, Phylogeny, RNA, Viral (genetics), Rabies (veterinary), Rabies virus (genetics), Reverse Transcriptase Polymerase Chain Reaction, Zoonoses (transmission).
- MESH :
- chemical , genetics : RNA, Viral.
- genetics : Rabies virus.
- physiology : Host-Pathogen Interactions.
- transmission : Zoonoses.
- veterinary : Rabies.
- virology : Animals, Wild.
- Animals, Biological Evolution, Carnivora, Genome, Viral, High-Throughput Nucleotide Sequencing, Humans, Phylogeny, Reverse Transcriptase Polymerase Chain Reaction.
Abstract
The natural evolution of rabies virus (RABV) provides a potent example of multiple host shifts and an important opportunity to determine the mechanisms that underpin viral emergence. Using 321 genome sequences spanning an unprecedented diversity of RABV, we compared evolutionary rates and selection pressures in viruses sampled from multiple primary host shifts that occurred on various continents. Two major phylogenetic groups, bat-related RABV and dog-related RABV, experiencing markedly different evolutionary dynamics were identified. While no correlation between time and genetic divergence was found in bat-related RABV, the evolution of dog-related RABV followed a generally clock-like structure, although with a relatively low evolutionary rate. Subsequent molecular clock dating indicated that dog-related RABV likely underwent a rapid global spread following the intensification of intercontinental trade starting in the 15th century. Strikingly, although dog RABV has jumped to various wildlife species from the order Carnivora, we found no clear evidence that these host-jumping events involved adaptive evolution, with RABV instead characterized by strong purifying selection, suggesting that ecological processes also play an important role in shaping patterns of emergence. However, specific amino acid changes were associated with the parallel emergence of RABV in ferret-badgers in Asia, and some host shifts were associated with increases in evolutionary rate, particularly in the ferret-badger and mongoose, implying that changes in host species can have important impacts on evolutionary dynamics.
DOI: 10.1371/journal.ppat.1006041
PubMed: 27977811
Links to Exploration step
pubmed:27977811Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Large-Scale Phylogenomic Analysis Reveals the Complex Evolutionary History of Rabies Virus in Multiple Carnivore Hosts.</title><author><name sortKey="Troupin, Cecile" sort="Troupin, Cecile" uniqKey="Troupin C" first="Cécile" last="Troupin">Cécile Troupin</name><affiliation><nlm:affiliation>Institut Pasteur, Unit Lyssavirus Dynamics and Host Adaptation, WHO Collaborating Centre for Reference and Research on Rabies, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Dacheux, Laurent" sort="Dacheux, Laurent" uniqKey="Dacheux L" first="Laurent" last="Dacheux">Laurent Dacheux</name><affiliation><nlm:affiliation>Institut Pasteur, Unit Lyssavirus Dynamics and Host Adaptation, WHO Collaborating Centre for Reference and Research on Rabies, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Tanguy, Marion" sort="Tanguy, Marion" uniqKey="Tanguy M" first="Marion" last="Tanguy">Marion Tanguy</name><affiliation><nlm:affiliation>Institut Pasteur, Unit Lyssavirus Dynamics and Host Adaptation, WHO Collaborating Centre for Reference and Research on Rabies, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Sabeta, Claude" sort="Sabeta, Claude" uniqKey="Sabeta C" first="Claude" last="Sabeta">Claude Sabeta</name><affiliation><nlm:affiliation>Agricultural Research Council, Onderstepoort Veterinary Institute, OIE Rabies Reference Laboratory, Pretoria, South Africa.</nlm:affiliation></affiliation></author><author><name sortKey="Blanc, Herve" sort="Blanc, Herve" uniqKey="Blanc H" first="Hervé" last="Blanc">Hervé Blanc</name><affiliation><nlm:affiliation>Institut Pasteur, Centre National de la Recherche Scientifique UMR 3569, Viral Populations and Pathogenesis Unit, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Bouchier, Christiane" sort="Bouchier, Christiane" uniqKey="Bouchier C" first="Christiane" last="Bouchier">Christiane Bouchier</name><affiliation><nlm:affiliation>Institut Pasteur, Genomics Platform, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Vignuzzi, Marco" sort="Vignuzzi, Marco" uniqKey="Vignuzzi M" first="Marco" last="Vignuzzi">Marco Vignuzzi</name><affiliation><nlm:affiliation>Institut Pasteur, Centre National de la Recherche Scientifique UMR 3569, Viral Populations and Pathogenesis Unit, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Duchene, Sebastian" sort="Duchene, Sebastian" uniqKey="Duchene S" first="Sebastián" last="Duchene">Sebastián Duchene</name><affiliation><nlm:affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, The University of Sydney, Sydney, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Holmes, Edward C" sort="Holmes, Edward C" uniqKey="Holmes E" first="Edward C" last="Holmes">Edward C. Holmes</name><affiliation><nlm:affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, The University of Sydney, Sydney, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Bourhy, Herve" sort="Bourhy, Herve" uniqKey="Bourhy H" first="Hervé" last="Bourhy">Hervé Bourhy</name><affiliation><nlm:affiliation>Institut Pasteur, Unit Lyssavirus Dynamics and Host Adaptation, WHO Collaborating Centre for Reference and Research on Rabies, Paris, France.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2016">2016</date><idno type="RBID">pubmed:27977811</idno><idno type="pmid">27977811</idno><idno type="doi">10.1371/journal.ppat.1006041</idno><idno type="wicri:Area/PubMed/Corpus">001409</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">001409</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Large-Scale Phylogenomic Analysis Reveals the Complex Evolutionary History of Rabies Virus in Multiple Carnivore Hosts.</title><author><name sortKey="Troupin, Cecile" sort="Troupin, Cecile" uniqKey="Troupin C" first="Cécile" last="Troupin">Cécile Troupin</name><affiliation><nlm:affiliation>Institut Pasteur, Unit Lyssavirus Dynamics and Host Adaptation, WHO Collaborating Centre for Reference and Research on Rabies, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Dacheux, Laurent" sort="Dacheux, Laurent" uniqKey="Dacheux L" first="Laurent" last="Dacheux">Laurent Dacheux</name><affiliation><nlm:affiliation>Institut Pasteur, Unit Lyssavirus Dynamics and Host Adaptation, WHO Collaborating Centre for Reference and Research on Rabies, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Tanguy, Marion" sort="Tanguy, Marion" uniqKey="Tanguy M" first="Marion" last="Tanguy">Marion Tanguy</name><affiliation><nlm:affiliation>Institut Pasteur, Unit Lyssavirus Dynamics and Host Adaptation, WHO Collaborating Centre for Reference and Research on Rabies, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Sabeta, Claude" sort="Sabeta, Claude" uniqKey="Sabeta C" first="Claude" last="Sabeta">Claude Sabeta</name><affiliation><nlm:affiliation>Agricultural Research Council, Onderstepoort Veterinary Institute, OIE Rabies Reference Laboratory, Pretoria, South Africa.</nlm:affiliation></affiliation></author><author><name sortKey="Blanc, Herve" sort="Blanc, Herve" uniqKey="Blanc H" first="Hervé" last="Blanc">Hervé Blanc</name><affiliation><nlm:affiliation>Institut Pasteur, Centre National de la Recherche Scientifique UMR 3569, Viral Populations and Pathogenesis Unit, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Bouchier, Christiane" sort="Bouchier, Christiane" uniqKey="Bouchier C" first="Christiane" last="Bouchier">Christiane Bouchier</name><affiliation><nlm:affiliation>Institut Pasteur, Genomics Platform, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Vignuzzi, Marco" sort="Vignuzzi, Marco" uniqKey="Vignuzzi M" first="Marco" last="Vignuzzi">Marco Vignuzzi</name><affiliation><nlm:affiliation>Institut Pasteur, Centre National de la Recherche Scientifique UMR 3569, Viral Populations and Pathogenesis Unit, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Duchene, Sebastian" sort="Duchene, Sebastian" uniqKey="Duchene S" first="Sebastián" last="Duchene">Sebastián Duchene</name><affiliation><nlm:affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, The University of Sydney, Sydney, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Holmes, Edward C" sort="Holmes, Edward C" uniqKey="Holmes E" first="Edward C" last="Holmes">Edward C. Holmes</name><affiliation><nlm:affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, The University of Sydney, Sydney, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Bourhy, Herve" sort="Bourhy, Herve" uniqKey="Bourhy H" first="Hervé" last="Bourhy">Hervé Bourhy</name><affiliation><nlm:affiliation>Institut Pasteur, Unit Lyssavirus Dynamics and Host Adaptation, WHO Collaborating Centre for Reference and Research on Rabies, Paris, France.</nlm:affiliation></affiliation></author></analytic><series><title level="j">PLoS pathogens</title><idno type="eISSN">1553-7374</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Animals, Wild (virology)</term><term>Biological Evolution</term><term>Carnivora</term><term>Genome, Viral</term><term>High-Throughput Nucleotide Sequencing</term><term>Host-Pathogen Interactions (physiology)</term><term>Humans</term><term>Phylogeny</term><term>RNA, Viral (genetics)</term><term>Rabies (veterinary)</term><term>Rabies virus (genetics)</term><term>Reverse Transcriptase Polymerase Chain Reaction</term><term>Zoonoses (transmission)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Viral</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Rabies virus</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Host-Pathogen Interactions</term></keywords><keywords scheme="MESH" qualifier="transmission" xml:lang="en"><term>Zoonoses</term></keywords><keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Rabies</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Animals, Wild</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Biological Evolution</term><term>Carnivora</term><term>Genome, Viral</term><term>High-Throughput Nucleotide Sequencing</term><term>Humans</term><term>Phylogeny</term><term>Reverse Transcriptase Polymerase Chain Reaction</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The natural evolution of rabies virus (RABV) provides a potent example of multiple host shifts and an important opportunity to determine the mechanisms that underpin viral emergence. Using 321 genome sequences spanning an unprecedented diversity of RABV, we compared evolutionary rates and selection pressures in viruses sampled from multiple primary host shifts that occurred on various continents. Two major phylogenetic groups, bat-related RABV and dog-related RABV, experiencing markedly different evolutionary dynamics were identified. While no correlation between time and genetic divergence was found in bat-related RABV, the evolution of dog-related RABV followed a generally clock-like structure, although with a relatively low evolutionary rate. Subsequent molecular clock dating indicated that dog-related RABV likely underwent a rapid global spread following the intensification of intercontinental trade starting in the 15th century. Strikingly, although dog RABV has jumped to various wildlife species from the order Carnivora, we found no clear evidence that these host-jumping events involved adaptive evolution, with RABV instead characterized by strong purifying selection, suggesting that ecological processes also play an important role in shaping patterns of emergence. However, specific amino acid changes were associated with the parallel emergence of RABV in ferret-badgers in Asia, and some host shifts were associated with increases in evolutionary rate, particularly in the ferret-badger and mongoose, implying that changes in host species can have important impacts on evolutionary dynamics.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">27977811</PMID><DateCreated><Year>2016</Year><Month>12</Month><Day>15</Day></DateCreated><DateCompleted><Year>2017</Year><Month>05</Month><Day>31</Day></DateCompleted><DateRevised><Year>2017</Year><Month>05</Month><Day>31</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">1553-7374</ISSN><JournalIssue CitedMedium="Internet"><Volume>12</Volume><Issue>12</Issue><PubDate><Year>2016</Year><Month>Dec</Month></PubDate></JournalIssue><Title>PLoS pathogens</Title><ISOAbbreviation>PLoS Pathog.</ISOAbbreviation></Journal><ArticleTitle>Large-Scale Phylogenomic Analysis Reveals the Complex Evolutionary History of Rabies Virus in Multiple Carnivore Hosts.</ArticleTitle><Pagination><MedlinePgn>e1006041</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.ppat.1006041</ELocationID><Abstract><AbstractText>The natural evolution of rabies virus (RABV) provides a potent example of multiple host shifts and an important opportunity to determine the mechanisms that underpin viral emergence. Using 321 genome sequences spanning an unprecedented diversity of RABV, we compared evolutionary rates and selection pressures in viruses sampled from multiple primary host shifts that occurred on various continents. Two major phylogenetic groups, bat-related RABV and dog-related RABV, experiencing markedly different evolutionary dynamics were identified. While no correlation between time and genetic divergence was found in bat-related RABV, the evolution of dog-related RABV followed a generally clock-like structure, although with a relatively low evolutionary rate. Subsequent molecular clock dating indicated that dog-related RABV likely underwent a rapid global spread following the intensification of intercontinental trade starting in the 15th century. Strikingly, although dog RABV has jumped to various wildlife species from the order Carnivora, we found no clear evidence that these host-jumping events involved adaptive evolution, with RABV instead characterized by strong purifying selection, suggesting that ecological processes also play an important role in shaping patterns of emergence. However, specific amino acid changes were associated with the parallel emergence of RABV in ferret-badgers in Asia, and some host shifts were associated with increases in evolutionary rate, particularly in the ferret-badger and mongoose, implying that changes in host species can have important impacts on evolutionary dynamics.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Troupin</LastName><ForeName>Cécile</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Institut Pasteur, Unit Lyssavirus Dynamics and Host Adaptation, WHO Collaborating Centre for Reference and Research on Rabies, Paris, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dacheux</LastName><ForeName>Laurent</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Institut Pasteur, Unit Lyssavirus Dynamics and Host Adaptation, WHO Collaborating Centre for Reference and Research on Rabies, Paris, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tanguy</LastName><ForeName>Marion</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Institut Pasteur, Unit Lyssavirus Dynamics and Host Adaptation, WHO Collaborating Centre for Reference and Research on Rabies, Paris, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Institut Pasteur, Genomics Platform, Paris, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sabeta</LastName><ForeName>Claude</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Agricultural Research Council, Onderstepoort Veterinary Institute, OIE Rabies Reference Laboratory, Pretoria, South Africa.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Blanc</LastName><ForeName>Hervé</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Institut Pasteur, Centre National de la Recherche Scientifique UMR 3569, Viral Populations and Pathogenesis Unit, Paris, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bouchier</LastName><ForeName>Christiane</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Institut Pasteur, Genomics Platform, Paris, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Vignuzzi</LastName><ForeName>Marco</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Institut Pasteur, Centre National de la Recherche Scientifique UMR 3569, Viral Populations and Pathogenesis Unit, Paris, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Duchene</LastName><ForeName>Sebastián</ForeName><Initials>S</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-2863-0907</Identifier><AffiliationInfo><Affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, The University of Sydney, Sydney, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Centre for Systems Genomics, University of Melbourne, Parkville, Victoria, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Holmes</LastName><ForeName>Edward C</ForeName><Initials>EC</Initials><AffiliationInfo><Affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, The University of Sydney, Sydney, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bourhy</LastName><ForeName>Hervé</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Institut Pasteur, Unit Lyssavirus Dynamics and Host Adaptation, WHO Collaborating Centre for Reference and Research on Rabies, Paris, France.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>12</Month><Day>15</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>PLoS Pathog</MedlineTA><NlmUniqueID>101238921</NlmUniqueID><ISSNLinking>1553-7366</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012367">RNA, Viral</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><CommentsCorrectionsList><CommentsCorrections RefType="Cites"><RefSource>Mol Biol Evol. 2013 May;30(5):1196-205</RefSource><PMID Version="1">23420840</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Philos Trans R Soc Lond B Biol Sci. 2013 Feb 04;368(1614):20120196</RefSource><PMID Version="1">23382420</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Trends Ecol Evol. 2005 May;20(5):238-44</RefSource><PMID Version="1">16701375</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Mol Biol Evol. 2013 Mar;30(3):713-24</RefSource><PMID Version="1">23180580</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Mol Biol Evol. 2011 Dec;28(12):3355-65</RefSource><PMID Version="1">21705379</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Vet Microbiol. 2016;182:28-34</RefSource><PMID Version="1">26711025</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Virology. 2000 Jun 20;272(1):1-6</RefSource><PMID Version="1">10873743</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Annu Rev Microbiol. 2008;62:307-28</RefSource><PMID Version="1">18785840</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Genomics. 2013 Nov-Dec;102(5-6):500-6</RefSource><PMID Version="1">23912058</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Virus Res. 2013 Jun;174(1-2):27-36</RefSource><PMID Version="1">23524137</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>PLoS One. 2013 Dec 03;8(12):e82348</RefSource><PMID Version="1">24312657</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Virus Res. 2009 Jul;143(1):6-14</RefSource><PMID Version="1">19463716</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Genome Biol. 2010;11(8):R86</RefSource><PMID Version="1">20738864</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>J Virol. 2010 Sep;84(18):9557-74</RefSource><PMID Version="1">20610710</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>J Infect Dis. 2014 Jun 1;209(11):1744-53</RefSource><PMID Version="1">24367042</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Genome Announc. 2013 Jun 13;1(3):null</RefSource><PMID Version="1">23766399</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Annu Rev Microbiol. 1987;41:409-33</RefSource><PMID Version="1">3318675</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>PLoS One. 2008 Apr 30;3(4):e2057</RefSource><PMID Version="1">18446239</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Virology. 2002 Jul 5;298(2):286-305</RefSource><PMID Version="1">12127791</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>PLoS Pathog. 2012;8(5):e1002720</RefSource><PMID Version="1">22615575</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Bioinformatics. 2010 Oct 1;26(19):2455-7</RefSource><PMID Version="1">20671151</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Microbiol Mol Biol Rev. 2008 Sep;72(3):457-70</RefSource><PMID Version="1">18772285</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Bioinformatics. 2005 May 15;21(10):2531-3</RefSource><PMID Version="1">15713735</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>PLoS Pathog. 2012;8(6):e1002786</RefSource><PMID Version="1">22737076</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Virus Evol. 2015 Sep 10;1(1):vev011</RefSource><PMID Version="1">27774283</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>PLoS Negl Trop Dis. 2013 Nov 21;7(11):e2555</RefSource><PMID Version="1">24278493</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Mol Biol Evol. 2006 Jan;23(1):7-9</RefSource><PMID Version="1">16177232</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Curr Top Microbiol Immunol. 2007;315:85-111</RefSource><PMID Version="1">17848062</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Proc Natl Acad Sci U S A. 2007 May 8;104(19):7993-8</RefSource><PMID Version="1">17470818</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Arch Virol. 2014 Aug;159(8):2059-67</RefSource><PMID Version="1">24643334</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Proc Natl Acad Sci U S A. 2012 Nov 27;109(48):19715-20</RefSource><PMID Version="1">23150575</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>J Virol. 2010 Jan;84(2):1089-96</RefSource><PMID Version="1">19906936</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>J Wildl Dis. 2015 Oct;51(4):923-8</RefSource><PMID Version="1">26267459</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Virology. 2002 Jan 20;292(2):247-57</RefSource><PMID Version="1">11878928</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Mol Biol Evol. 2008 Jul;25(7):1459-71</RefSource><PMID Version="1">18408232</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Virus Res. 2005 Jul;111(1):13-27</RefSource><PMID Version="1">15896399</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>PLoS Negl Trop Dis. 2015 Apr 16;9(4):e0003709</RefSource><PMID Version="1">25881058</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Science. 2010 Aug 6;329(5992):676-9</RefSource><PMID Version="1">20689015</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Genetics. 2005 Jul;170(3):1001-8</RefSource><PMID Version="1">15879507</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Philos Trans R Soc Lond B Biol Sci. 2001 Jul 29;356(1411):991-9</RefSource><PMID Version="1">11516377</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Virus Genes. 2014 Dec;49(3):417-27</RefSource><PMID Version="1">25142164</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Infect Genet Evol. 2013 Jun;16:248-53</RefSource><PMID Version="1">23453987</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>J Gen Virol. 1999 Oct;80 ( Pt 10):2545-57</RefSource><PMID Version="1">10573146</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>PLoS Negl Trop Dis. 2013;7(1):e2039</RefSource><PMID Version="1">23383359</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Syst Biol. 2003 Oct;52(5):696-704</RefSource><PMID Version="1">14530136</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Virus Genes. 2013 Dec;47(3):563-8</RefSource><PMID Version="1">23975690</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Syst Biol. 2006 Aug;55(4):539-52</RefSource><PMID Version="1">16785212</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Crit Rev Microbiol. 2007;33(4):301-24</RefSource><PMID Version="1">18033596</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>J Wildl Dis. 2003 Jul;39(3):746-50</RefSource><PMID Version="1">14567243</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>J Mol Biol. 2004 Oct 29;343(4):819-31</RefSource><PMID Version="1">15476803</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Curr Top Microbiol Immunol. 2007;315:1-31</RefSource><PMID Version="1">17848058</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Curr Opin Biotechnol. 2003 Dec;14(6):641-6</RefSource><PMID Version="1">14662395</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Emerg Infect Dis. 2006 Aug;12(8):1274-7</RefSource><PMID Version="1">16965714</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Virol Sin. 2012 Jun;27(3):204-13</RefSource><PMID Version="1">22684475</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Curr Opin Virol. 2011 Dec;1(6):662-70</RefSource><PMID Version="1">22440925</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>PLoS Negl Trop Dis. 2014 Oct 16;8(10):e3251</RefSource><PMID Version="1">25330178</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>BMC Evol Biol. 2015 Jun 26;15:120</RefSource><PMID Version="1">26111936</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Arch Virol. 2007;152(7):1251-8</RefSource><PMID Version="1">17401615</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Virology. 2011 Feb 20;410(2):403-9</RefSource><PMID Version="1">21195445</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Genome Res. 2005 Oct;15(10):1451-5</RefSource><PMID Version="1">16169926</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>J Gen Virol. 2008 Nov;89(Pt 11):2673-81</RefSource><PMID Version="1">18931062</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Curr Protoc Mol Biol. 2010 Jan;Chapter 19:Unit 19.10.1-21</RefSource><PMID Version="1">20069535</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>J Virol. 2001 Sep;75(17):8096-104</RefSource><PMID Version="1">11483755</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Emerg Infect Dis. 2014 May;20(5):790-8</RefSource><PMID Version="1">24751120</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>PLoS Negl Trop Dis. 2013 Nov 21;7(11):e2560</RefSource><PMID Version="1">24278494</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Lancet. 2014 Oct 11;384(9951):1389-99</RefSource><PMID Version="1">24828901</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Virus Evol. 2016 Apr 09;2(1):vew007</RefSource><PMID Version="1">27774300</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>PLoS Pathog. 2010 Oct 28;6(10):e1001166</RefSource><PMID Version="1">21060816</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Virus Res. 2010 Jun;150(1-2):111-8</RefSource><PMID Version="1">20214936</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>J Gen Virol. 2009 Apr;90(Pt 4):783-91</RefSource><PMID Version="1">19264663</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Syst Biol. 2003 Oct;52(5):649-64</RefSource><PMID Version="1">14530132</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Curr Opin Virol. 2014 Oct;8:68-72</RefSource><PMID Version="1">25064563</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>BMC Evol Biol. 2007 Nov 08;7:214</RefSource><PMID Version="1">17996036</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Virus Res. 2005 May;109(2):165-73</RefSource><PMID Version="1">15763147</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Syst Biol. 2010 May;59(3):307-21</RefSource><PMID Version="1">20525638</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Nat Methods. 2012 Jul 30;9(8):772</RefSource><PMID Version="1">22847109</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Bioinformatics. 2007 Nov 1;23(21):2947-8</RefSource><PMID Version="1">17846036</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>PLoS Pathog. 2016 Apr 08;12(4):e1005525</RefSource><PMID Version="1">27058957</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Mol Biol Evol. 2005 May;22(5):1208-22</RefSource><PMID Version="1">15703242</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>PLoS Genet. 2012;8(7):e1002764</RefSource><PMID Version="1">22807683</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Virus Res. 2010 Jun;150(1-2):93-102</RefSource><PMID Version="1">20214938</PMID></CommentsCorrections></CommentsCorrectionsList><MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000835" MajorTopicYN="N">Animals, Wild</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005075" MajorTopicYN="Y">Biological Evolution</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002335" MajorTopicYN="N">Carnivora</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016679" MajorTopicYN="N">Genome, Viral</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D059014" MajorTopicYN="N">High-Throughput Nucleotide Sequencing</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D054884" MajorTopicYN="N">Host-Pathogen Interactions</DescriptorName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012367" MajorTopicYN="N">RNA, Viral</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011818" MajorTopicYN="N">Rabies</DescriptorName><QualifierName UI="Q000662" MajorTopicYN="Y">veterinary</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011820" MajorTopicYN="N">Rabies virus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020133" MajorTopicYN="N">Reverse Transcriptase Polymerase Chain Reaction</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015047" MajorTopicYN="N">Zoonoses</DescriptorName><QualifierName UI="Q000635" MajorTopicYN="N">transmission</QualifierName></MeshHeading></MeshHeadingList><CoiStatement>The authors have declared that no competing interests exist.</CoiStatement></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2016</Year><Month>06</Month><Day>03</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2016</Year><Month>11</Month><Day>03</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2016</Year><Month>12</Month><Day>16</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2016</Year><Month>12</Month><Day>16</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2017</Year><Month>6</Month><Day>1</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">27977811</ArticleId><ArticleId IdType="doi">10.1371/journal.ppat.1006041</ArticleId><ArticleId IdType="pii">PPATHOGENS-D-16-01266</ArticleId><ArticleId IdType="pmc">PMC5158080</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Asie/explor/AustralieFrV1/Data/PubMed/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001409 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/PubMed/Corpus/biblio.hfd -nk 001409 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/Asie
|area= AustralieFrV1
|flux= PubMed
|étape= Corpus
|type= RBID
|clé= pubmed:27977811
|texte= Large-Scale Phylogenomic Analysis Reveals the Complex Evolutionary History of Rabies Virus in Multiple Carnivore Hosts.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/PubMed/Corpus/RBID.i -Sk "pubmed:27977811" \
| HfdSelect -Kh $EXPLOR_AREA/Data/PubMed/Corpus/biblio.hfd \
| NlmPubMed2Wicri -a AustralieFrV1
| This area was generated with Dilib version V0.6.33. |  |