RNA-sequence analysis of gene expression from honeybees (Apis mellifera) infected with Nosema ceranae.
Identifieur interne : 000F87 ( PubMed/Corpus ); précédent : 000F86; suivant : 000F88RNA-sequence analysis of gene expression from honeybees (Apis mellifera) infected with Nosema ceranae.
Auteurs : Bouabid Badaoui ; André Fougeroux ; Fabien Petit ; Anna Anselmo ; Chiara Gorni ; Marco Cucurachi ; Antonella Cersini ; Anna Granato ; Giusy Cardeti ; Giovanni Formato ; Franco Mutinelli ; Elisabetta Giuffra ; John L. Williams ; Sara BottiSource :
- PloS one [ 1932-6203 ] ; 2017.
English descriptors
- KwdEn :
- Animals, Bees (genetics), Bees (microbiology), Energy Metabolism (genetics), Gene Expression Profiling (methods), Genes, Insect (genetics), Host-Pathogen Interactions, Insect Proteins (genetics), Nosema (physiology), Principal Component Analysis, Promoter Regions, Genetic (genetics), Protein Isoforms (genetics), Reverse Transcriptase Polymerase Chain Reaction, Sequence Analysis, RNA (methods), Signal Transduction (genetics), Spores, Fungal (physiology), Time Factors, Transcription Initiation Site.
- MESH :
- chemical , genetics : Insect Proteins, Protein Isoforms.
- genetics : Bees, Energy Metabolism, Genes, Insect, Promoter Regions, Genetic, Signal Transduction.
- methods : Gene Expression Profiling, Sequence Analysis, RNA.
- microbiology : Bees.
- physiology : Nosema, Spores, Fungal.
- Animals, Host-Pathogen Interactions, Principal Component Analysis, Reverse Transcriptase Polymerase Chain Reaction, Time Factors, Transcription Initiation Site.
Abstract
Honeybees (Apis mellifera) are constantly subjected to many biotic stressors including parasites. This study examined honeybees infected with Nosema ceranae (N. ceranae). N. ceranae infection increases the bees energy requirements and may contribute to their decreased survival. RNA-seq was used to investigate gene expression at days 5, 10 and 15 Post Infection (P.I) with N. ceranae. The expression levels of genes, isoforms, alternative transcription start sites (TSS) and differential promoter usage revealed a complex pattern of transcriptional and post-transcriptional gene regulation suggesting that bees use a range of tactics to cope with the stress of N. ceranae infection. N. ceranae infection may cause reduced immune function in the bees by: (i)disturbing the host amino acids metabolism (ii) down-regulating expression of antimicrobial peptides (iii) down-regulation of cuticle coatings and (iv) down-regulation of odorant binding proteins.
DOI: 10.1371/journal.pone.0173438
PubMed: 28350872
Links to Exploration step
pubmed:28350872Le document en format XML
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Williams</name><affiliation><nlm:affiliation>Davies Research Centre, University of Adelaide, Roseworthy, South Australia, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Botti, Sara" sort="Botti, Sara" uniqKey="Botti S" first="Sara" last="Botti">Sara Botti</name><affiliation><nlm:affiliation>Parco Tecnologico Padano - CERSA, Integrative Biology Group, Lodi, Italy.</nlm:affiliation></affiliation></author></analytic><series><title level="j">PloS one</title><idno type="eISSN">1932-6203</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Bees (genetics)</term><term>Bees (microbiology)</term><term>Energy Metabolism (genetics)</term><term>Gene Expression Profiling (methods)</term><term>Genes, Insect (genetics)</term><term>Host-Pathogen Interactions</term><term>Insect Proteins (genetics)</term><term>Nosema (physiology)</term><term>Principal Component Analysis</term><term>Promoter Regions, Genetic (genetics)</term><term>Protein Isoforms (genetics)</term><term>Reverse Transcriptase Polymerase Chain Reaction</term><term>Sequence Analysis, RNA (methods)</term><term>Signal Transduction (genetics)</term><term>Spores, Fungal (physiology)</term><term>Time Factors</term><term>Transcription Initiation Site</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Insect Proteins</term><term>Protein Isoforms</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Bees</term><term>Energy Metabolism</term><term>Genes, Insect</term><term>Promoter Regions, Genetic</term><term>Signal Transduction</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Gene Expression Profiling</term><term>Sequence Analysis, RNA</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Bees</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Nosema</term><term>Spores, Fungal</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Host-Pathogen Interactions</term><term>Principal Component Analysis</term><term>Reverse Transcriptase Polymerase Chain Reaction</term><term>Time Factors</term><term>Transcription Initiation Site</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Honeybees (Apis mellifera) are constantly subjected to many biotic stressors including parasites. This study examined honeybees infected with Nosema ceranae (N. ceranae). N. ceranae infection increases the bees energy requirements and may contribute to their decreased survival. RNA-seq was used to investigate gene expression at days 5, 10 and 15 Post Infection (P.I) with N. ceranae. The expression levels of genes, isoforms, alternative transcription start sites (TSS) and differential promoter usage revealed a complex pattern of transcriptional and post-transcriptional gene regulation suggesting that bees use a range of tactics to cope with the stress of N. ceranae infection. N. ceranae infection may cause reduced immune function in the bees by: (i)disturbing the host amino acids metabolism (ii) down-regulating expression of antimicrobial peptides (iii) down-regulation of cuticle coatings and (iv) down-regulation of odorant binding proteins.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">28350872</PMID><DateCreated><Year>2017</Year><Month>03</Month><Day>28</Day></DateCreated><DateCompleted><Year>2017</Year><Month>08</Month><Day>28</Day></DateCompleted><DateRevised><Year>2017</Year><Month>08</Month><Day>28</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">1932-6203</ISSN><JournalIssue CitedMedium="Internet"><Volume>12</Volume><Issue>3</Issue><PubDate><Year>2017</Year></PubDate></JournalIssue><Title>PloS one</Title><ISOAbbreviation>PLoS ONE</ISOAbbreviation></Journal><ArticleTitle>RNA-sequence analysis of gene expression from honeybees (Apis mellifera) infected with Nosema ceranae.</ArticleTitle><Pagination><MedlinePgn>e0173438</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.pone.0173438</ELocationID><Abstract><AbstractText>Honeybees (Apis mellifera) are constantly subjected to many biotic stressors including parasites. This study examined honeybees infected with Nosema ceranae (N. ceranae). N. ceranae infection increases the bees energy requirements and may contribute to their decreased survival. RNA-seq was used to investigate gene expression at days 5, 10 and 15 Post Infection (P.I) with N. ceranae. The expression levels of genes, isoforms, alternative transcription start sites (TSS) and differential promoter usage revealed a complex pattern of transcriptional and post-transcriptional gene regulation suggesting that bees use a range of tactics to cope with the stress of N. ceranae infection. N. ceranae infection may cause reduced immune function in the bees by: (i)disturbing the host amino acids metabolism (ii) down-regulating expression of antimicrobial peptides (iii) down-regulation of cuticle coatings and (iv) down-regulation of odorant binding proteins.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Badaoui</LastName><ForeName>Bouabid</ForeName><Initials>B</Initials><Identifier Source="ORCID">http://orcid.org/0000-0001-6808-1765</Identifier><AffiliationInfo><Affiliation>Parco Tecnologico Padano - CERSA, Integrative Biology Group, Lodi, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fougeroux</LastName><ForeName>André</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Syngenta, Guyancourt, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Petit</LastName><ForeName>Fabien</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>RNAGRO, TOURS, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Anselmo</LastName><ForeName>Anna</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Parco Tecnologico Padano - CERSA, Integrative Biology Group, Lodi, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gorni</LastName><ForeName>Chiara</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Parco Tecnologico Padano - CERSA, Integrative Biology Group, Lodi, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cucurachi</LastName><ForeName>Marco</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Parco Tecnologico Padano - CERSA, Integrative Biology Group, Lodi, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cersini</LastName><ForeName>Antonella</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Istituto Zooprofilattico Sperimentale del Lazio e della Toscana, Roma, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Granato</LastName><ForeName>Anna</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Padua, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cardeti</LastName><ForeName>Giusy</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Istituto Zooprofilattico Sperimentale del Lazio e della Toscana, Roma, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Formato</LastName><ForeName>Giovanni</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Istituto Zooprofilattico Sperimentale del Lazio e della Toscana, Roma, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mutinelli</LastName><ForeName>Franco</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Padua, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Giuffra</LastName><ForeName>Elisabetta</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Parco Tecnologico Padano - CERSA, Integrative Biology Group, Lodi, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Williams</LastName><ForeName>John L</ForeName><Initials>JL</Initials><AffiliationInfo><Affiliation>Davies Research Centre, University of Adelaide, Roseworthy, South Australia, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Botti</LastName><ForeName>Sara</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Parco Tecnologico Padano - CERSA, Integrative Biology Group, Lodi, Italy.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate 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Version="1">17156492</PMID></CommentsCorrections></CommentsCorrectionsList><MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001516" MajorTopicYN="N">Bees</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004734" MajorTopicYN="N">Energy Metabolism</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017344" MajorTopicYN="N">Genes, Insect</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D054884" 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