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Neandertal and Denisovan DNA from Pleistocene sediments.

Identifieur interne : 000D00 ( PubMed/Corpus ); précédent : 000C99; suivant : 000D01

Neandertal and Denisovan DNA from Pleistocene sediments.

Auteurs : Viviane Slon ; Charlotte Hopfe ; Clemens L. Wei ; Fabrizio Mafessoni ; Marco De La Rasilla ; Carles Lalueza-Fox ; Antonio Rosas ; Marie Soressi ; Monika V. Knul ; Rebecca Miller ; John R. Stewart ; Anatoly P. Derevianko ; Zenobia Jacobs ; Bo Li ; Richard G. Roberts ; Michael V. Shunkov ; Henry De Lumley ; Christian Perrenoud ; Ivan Guši ; Željko Ku An ; Pavao Rudan ; Ayinuer Aximu-Petri ; Elena Essel ; Sarah Nagel ; Birgit Nickel ; Anna Schmidt ; Kay Prüfer ; Janet Kelso ; Hernán A. Burbano ; Svante P Bo ; Matthias Meyer

Source :

RBID : pubmed:28450384

Abstract

Although a rich record of Pleistocene human-associated archaeological assemblages exists, the scarcity of hominin fossils often impedes the understanding of which hominins occupied a site. Using targeted enrichment of mitochondrial DNA, we show that cave sediments represent a rich source of ancient mammalian DNA that often includes traces of hominin DNA, even at sites and in layers where no hominin remains have been discovered. By automation-assisted screening of numerous sediment samples, we detected Neandertal DNA in eight archaeological layers from four caves in Eurasia. In Denisova Cave, we retrieved Denisovan DNA in a Middle Pleistocene layer near the bottom of the stratigraphy. Our work opens the possibility of detecting the presence of hominin groups at sites and in areas where no skeletal remains are found.

DOI: 10.1126/science.aam9695
PubMed: 28450384

Links to Exploration step

pubmed:28450384

Le document en format XML

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<name sortKey="Lalueza Fox, Carles" sort="Lalueza Fox, Carles" uniqKey="Lalueza Fox C" first="Carles" last="Lalueza-Fox">Carles Lalueza-Fox</name>
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<name sortKey="Knul, Monika V" sort="Knul, Monika V" uniqKey="Knul M" first="Monika V" last="Knul">Monika V. Knul</name>
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<name sortKey="Miller, Rebecca" sort="Miller, Rebecca" uniqKey="Miller R" first="Rebecca" last="Miller">Rebecca Miller</name>
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<name sortKey="Stewart, John R" sort="Stewart, John R" uniqKey="Stewart J" first="John R" last="Stewart">John R. Stewart</name>
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<name sortKey="Derevianko, Anatoly P" sort="Derevianko, Anatoly P" uniqKey="Derevianko A" first="Anatoly P" last="Derevianko">Anatoly P. Derevianko</name>
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<name sortKey="Jacobs, Zenobia" sort="Jacobs, Zenobia" uniqKey="Jacobs Z" first="Zenobia" last="Jacobs">Zenobia Jacobs</name>
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<name sortKey="Perrenoud, Christian" sort="Perrenoud, Christian" uniqKey="Perrenoud C" first="Christian" last="Perrenoud">Christian Perrenoud</name>
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<name sortKey="Gusi, Ivan" sort="Gusi, Ivan" uniqKey="Gusi I" first="Ivan" last="Guši">Ivan Guši</name>
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<name sortKey="Ku An, Zeljko" sort="Ku An, Zeljko" uniqKey="Ku An Z" first="Željko" last="Ku An">Željko Ku An</name>
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<name sortKey="Essel, Elena" sort="Essel, Elena" uniqKey="Essel E" first="Elena" last="Essel">Elena Essel</name>
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<name sortKey="Nagel, Sarah" sort="Nagel, Sarah" uniqKey="Nagel S" first="Sarah" last="Nagel">Sarah Nagel</name>
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<name sortKey="Schmidt, Anna" sort="Schmidt, Anna" uniqKey="Schmidt A" first="Anna" last="Schmidt">Anna Schmidt</name>
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<name sortKey="Prufer, Kay" sort="Prufer, Kay" uniqKey="Prufer K" first="Kay" last="Prüfer">Kay Prüfer</name>
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<nlm:affiliation>Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.</nlm:affiliation>
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<name sortKey="Kelso, Janet" sort="Kelso, Janet" uniqKey="Kelso J" first="Janet" last="Kelso">Janet Kelso</name>
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<nlm:affiliation>Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.</nlm:affiliation>
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<name sortKey="Burbano, Hernan A" sort="Burbano, Hernan A" uniqKey="Burbano H" first="Hernán A" last="Burbano">Hernán A. Burbano</name>
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<nlm:affiliation>Research Group for Ancient Genomics and Evolution, Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.</nlm:affiliation>
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<name sortKey="P Bo, Svante" sort="P Bo, Svante" uniqKey="P Bo S" first="Svante" last="P Bo">Svante P Bo</name>
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<nlm:affiliation>Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.</nlm:affiliation>
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<name sortKey="Meyer, Matthias" sort="Meyer, Matthias" uniqKey="Meyer M" first="Matthias" last="Meyer">Matthias Meyer</name>
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<nlm:affiliation>Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany. viviane_slon@eva.mpg.de mmeyer@eva.mpg.de.</nlm:affiliation>
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<name sortKey="Hopfe, Charlotte" sort="Hopfe, Charlotte" uniqKey="Hopfe C" first="Charlotte" last="Hopfe">Charlotte Hopfe</name>
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<name sortKey="Wei, Clemens L" sort="Wei, Clemens L" uniqKey="Wei C" first="Clemens L" last="Wei">Clemens L. Wei</name>
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<nlm:affiliation>Research Group for Ancient Genomics and Evolution, Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.</nlm:affiliation>
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<name sortKey="Mafessoni, Fabrizio" sort="Mafessoni, Fabrizio" uniqKey="Mafessoni F" first="Fabrizio" last="Mafessoni">Fabrizio Mafessoni</name>
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<nlm:affiliation>Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.</nlm:affiliation>
</affiliation>
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<name sortKey="De La Rasilla, Marco" sort="De La Rasilla, Marco" uniqKey="De La Rasilla M" first="Marco" last="De La Rasilla">Marco De La Rasilla</name>
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<nlm:affiliation>Área de Prehistoria, Department of History, Universidad de Oviedo, Calle Teniente Alfonso Martínez s/n, 33011 Oviedo, Spain.</nlm:affiliation>
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<author>
<name sortKey="Lalueza Fox, Carles" sort="Lalueza Fox, Carles" uniqKey="Lalueza Fox C" first="Carles" last="Lalueza-Fox">Carles Lalueza-Fox</name>
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<nlm:affiliation>Institute of Evolutionary Biology, Universitat Pompeu Fabra-Consejo Superior de Investigaciones Científicas (UPF-CSIC), 08003 Barcelona, Spain.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Rosas, Antonio" sort="Rosas, Antonio" uniqKey="Rosas A" first="Antonio" last="Rosas">Antonio Rosas</name>
<affiliation>
<nlm:affiliation>Departamento de Paleobiología, Museo Nacional de Ciencias Naturales, CSIC, 28006 Madrid, Spain.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Soressi, Marie" sort="Soressi, Marie" uniqKey="Soressi M" first="Marie" last="Soressi">Marie Soressi</name>
<affiliation>
<nlm:affiliation>Faculty of Archaeology, Leiden University, 2333CC Leiden, Netherlands.</nlm:affiliation>
</affiliation>
</author>
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<name sortKey="Knul, Monika V" sort="Knul, Monika V" uniqKey="Knul M" first="Monika V" last="Knul">Monika V. Knul</name>
<affiliation>
<nlm:affiliation>Faculty of Science and Technology, Bournemouth University, Poole, Dorset, UK.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Miller, Rebecca" sort="Miller, Rebecca" uniqKey="Miller R" first="Rebecca" last="Miller">Rebecca Miller</name>
<affiliation>
<nlm:affiliation>Service de Préhistoire, Université de Liège, 4000 Liège, Belgium.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Stewart, John R" sort="Stewart, John R" uniqKey="Stewart J" first="John R" last="Stewart">John R. Stewart</name>
<affiliation>
<nlm:affiliation>Faculty of Science and Technology, Bournemouth University, Poole, Dorset, UK.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Derevianko, Anatoly P" sort="Derevianko, Anatoly P" uniqKey="Derevianko A" first="Anatoly P" last="Derevianko">Anatoly P. Derevianko</name>
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<nlm:affiliation>Institute of Archaeology and Ethnography, Russian Academy of Sciences, Siberian Branch, Novosibirsk, RU-630090, Russia.</nlm:affiliation>
</affiliation>
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<name sortKey="Jacobs, Zenobia" sort="Jacobs, Zenobia" uniqKey="Jacobs Z" first="Zenobia" last="Jacobs">Zenobia Jacobs</name>
<affiliation>
<nlm:affiliation>Centre for Archaeological Science, School of Earth and Environmental Sciences, University of Wollongong, Wollongong, New South Wales 2522, Australia.</nlm:affiliation>
</affiliation>
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<name sortKey="Li, Bo" sort="Li, Bo" uniqKey="Li B" first="Bo" last="Li">Bo Li</name>
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<nlm:affiliation>Centre for Archaeological Science, School of Earth and Environmental Sciences, University of Wollongong, Wollongong, New South Wales 2522, Australia.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Roberts, Richard G" sort="Roberts, Richard G" uniqKey="Roberts R" first="Richard G" last="Roberts">Richard G. Roberts</name>
<affiliation>
<nlm:affiliation>Centre for Archaeological Science, School of Earth and Environmental Sciences, University of Wollongong, Wollongong, New South Wales 2522, Australia.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Shunkov, Michael V" sort="Shunkov, Michael V" uniqKey="Shunkov M" first="Michael V" last="Shunkov">Michael V. Shunkov</name>
<affiliation>
<nlm:affiliation>Institute of Archaeology and Ethnography, Russian Academy of Sciences, Siberian Branch, Novosibirsk, RU-630090, Russia.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="De Lumley, Henry" sort="De Lumley, Henry" uniqKey="De Lumley H" first="Henry" last="De Lumley">Henry De Lumley</name>
<affiliation>
<nlm:affiliation>Centre Européen de Recherches Préhistoriques de Tautavel, 66720 Tautavel, France.</nlm:affiliation>
</affiliation>
</author>
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<name sortKey="Perrenoud, Christian" sort="Perrenoud, Christian" uniqKey="Perrenoud C" first="Christian" last="Perrenoud">Christian Perrenoud</name>
<affiliation>
<nlm:affiliation>Centre Européen de Recherches Préhistoriques de Tautavel, 66720 Tautavel, France.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Gusi, Ivan" sort="Gusi, Ivan" uniqKey="Gusi I" first="Ivan" last="Guši">Ivan Guši</name>
<affiliation>
<nlm:affiliation>Anthropology Center of the Croatian Academy of Sciences and Arts, 10000 Zagreb, Croatia.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Ku An, Zeljko" sort="Ku An, Zeljko" uniqKey="Ku An Z" first="Željko" last="Ku An">Željko Ku An</name>
<affiliation>
<nlm:affiliation>Anthropology Center of the Croatian Academy of Sciences and Arts, 10000 Zagreb, Croatia.</nlm:affiliation>
</affiliation>
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<name sortKey="Rudan, Pavao" sort="Rudan, Pavao" uniqKey="Rudan P" first="Pavao" last="Rudan">Pavao Rudan</name>
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<nlm:affiliation>Anthropology Center of the Croatian Academy of Sciences and Arts, 10000 Zagreb, Croatia.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Aximu Petri, Ayinuer" sort="Aximu Petri, Ayinuer" uniqKey="Aximu Petri A" first="Ayinuer" last="Aximu-Petri">Ayinuer Aximu-Petri</name>
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<nlm:affiliation>Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.</nlm:affiliation>
</affiliation>
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<name sortKey="Essel, Elena" sort="Essel, Elena" uniqKey="Essel E" first="Elena" last="Essel">Elena Essel</name>
<affiliation>
<nlm:affiliation>Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Nagel, Sarah" sort="Nagel, Sarah" uniqKey="Nagel S" first="Sarah" last="Nagel">Sarah Nagel</name>
<affiliation>
<nlm:affiliation>Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Nickel, Birgit" sort="Nickel, Birgit" uniqKey="Nickel B" first="Birgit" last="Nickel">Birgit Nickel</name>
<affiliation>
<nlm:affiliation>Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Schmidt, Anna" sort="Schmidt, Anna" uniqKey="Schmidt A" first="Anna" last="Schmidt">Anna Schmidt</name>
<affiliation>
<nlm:affiliation>Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Prufer, Kay" sort="Prufer, Kay" uniqKey="Prufer K" first="Kay" last="Prüfer">Kay Prüfer</name>
<affiliation>
<nlm:affiliation>Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Kelso, Janet" sort="Kelso, Janet" uniqKey="Kelso J" first="Janet" last="Kelso">Janet Kelso</name>
<affiliation>
<nlm:affiliation>Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Burbano, Hernan A" sort="Burbano, Hernan A" uniqKey="Burbano H" first="Hernán A" last="Burbano">Hernán A. Burbano</name>
<affiliation>
<nlm:affiliation>Research Group for Ancient Genomics and Evolution, Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="P Bo, Svante" sort="P Bo, Svante" uniqKey="P Bo S" first="Svante" last="P Bo">Svante P Bo</name>
<affiliation>
<nlm:affiliation>Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Meyer, Matthias" sort="Meyer, Matthias" uniqKey="Meyer M" first="Matthias" last="Meyer">Matthias Meyer</name>
<affiliation>
<nlm:affiliation>Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany. viviane_slon@eva.mpg.de mmeyer@eva.mpg.de.</nlm:affiliation>
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<div type="abstract" xml:lang="en">Although a rich record of Pleistocene human-associated archaeological assemblages exists, the scarcity of hominin fossils often impedes the understanding of which hominins occupied a site. Using targeted enrichment of mitochondrial DNA, we show that cave sediments represent a rich source of ancient mammalian DNA that often includes traces of hominin DNA, even at sites and in layers where no hominin remains have been discovered. By automation-assisted screening of numerous sediment samples, we detected Neandertal DNA in eight archaeological layers from four caves in Eurasia. In Denisova Cave, we retrieved Denisovan DNA in a Middle Pleistocene layer near the bottom of the stratigraphy. Our work opens the possibility of detecting the presence of hominin groups at sites and in areas where no skeletal remains are found.</div>
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<ArticleTitle>Neandertal and Denisovan DNA from Pleistocene sediments.</ArticleTitle>
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<AbstractText>Although a rich record of Pleistocene human-associated archaeological assemblages exists, the scarcity of hominin fossils often impedes the understanding of which hominins occupied a site. Using targeted enrichment of mitochondrial DNA, we show that cave sediments represent a rich source of ancient mammalian DNA that often includes traces of hominin DNA, even at sites and in layers where no hominin remains have been discovered. By automation-assisted screening of numerous sediment samples, we detected Neandertal DNA in eight archaeological layers from four caves in Eurasia. In Denisova Cave, we retrieved Denisovan DNA in a Middle Pleistocene layer near the bottom of the stratigraphy. Our work opens the possibility of detecting the presence of hominin groups at sites and in areas where no skeletal remains are found.</AbstractText>
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<Affiliation>Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany. viviane_slon@eva.mpg.de mmeyer@eva.mpg.de.</Affiliation>
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<Affiliation>Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.</Affiliation>
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<Affiliation>Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.</Affiliation>
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