Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges.
Identifieur interne : 000577 ( PubMed/Corpus ); précédent : 000576; suivant : 000578Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges.
Auteurs : Anaïs Gouin ; Anthony Bretaudeau ; Kiwoong Nam ; Sylvie Gimenez ; Jean-Marc Aury ; Bernard Duvic ; Frédérique Hilliou ; Nicolas Durand ; Nicolas Montagné ; Isabelle Darboux ; Suyog Kuwar ; Thomas Chertemps ; David Siaussat ; Anne Bretschneider ; Yves Moné ; Seung-Joon Ahn ; Sabine H Nniger ; Anne-Sophie Gosselin Grenet ; David Neunemann ; Florian Maumus ; Isabelle Luyten ; Karine Labadie ; Wei Xu ; Fotini Koutroumpa ; Jean-Michel Escoubas ; Angel Llopis ; Martine Maïbèche-Coisne ; Fanny Salasc ; Archana Tomar ; Alisha R. Anderson ; Sher Afzal Khan ; Pascaline Dumas ; Marion Orsucci ; Julie Guy ; Caroline Belser ; Adriana Alberti ; Benjamin Noel ; Arnaud Couloux ; Jonathan Mercier ; Sabine Nidelet ; Emeric Dubois ; Nai-Yong Liu ; Isabelle Boulogne ; Olivier Mirabeau ; Gaelle Le Goff ; Karl Gordon ; John Oakeshott ; Fernando L. Consoli ; Anne-Nathalie Volkoff ; Howard W. Fescemyer ; James H. Marden ; Dawn S. Luthe ; Salvador Herrero ; David G. Heckel ; Patrick Wincker ; Gael J. Kergoat ; Joelle Amselem ; Hadi Quesneville ; Astrid T. Groot ; Emmanuelle Jacquin-Joly ; Nicolas Nègre ; Claire Lemaitre ; Fabrice Legeai ; Emmanuelle D'Alençon ; Philippe FournierSource :
- Scientific reports [ 2045-2322 ] ; 2017.
Abstract
Emergence of polyphagous herbivorous insects entails significant adaptation to recognize, detoxify and digest a variety of host-plants. Despite of its biological and practical importance - since insects eat 20% of crops - no exhaustive analysis of gene repertoires required for adaptations in generalist insect herbivores has previously been performed. The noctuid moth Spodoptera frugiperda ranks as one of the world's worst agricultural pests. This insect is polyphagous while the majority of other lepidopteran herbivores are specialist. It consists of two morphologically indistinguishable strains ("C" and "R") that have different host plant ranges. To describe the evolutionary mechanisms that both enable the emergence of polyphagous herbivory and lead to the shift in the host preference, we analyzed whole genome sequences from laboratory and natural populations of both strains. We observed huge expansions of genes associated with chemosensation and detoxification compared with specialist Lepidoptera. These expansions are largely due to tandem duplication, a possible adaptation mechanism enabling polyphagy. Individuals from natural C and R populations show significant genomic differentiation. We found signatures of positive selection in genes involved in chemoreception, detoxification and digestion, and copy number variation in the two latter gene families, suggesting an adaptive role for structural variation.
DOI: 10.1038/s41598-017-10461-4
PubMed: 28947760
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pubmed:28947760Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges.</title><author><name sortKey="Gouin, Anais" sort="Gouin, Anais" uniqKey="Gouin A" first="Anaïs" last="Gouin">Anaïs Gouin</name><affiliation><nlm:affiliation>INRIA, IRISA, GenScale, Campus de Beaulieu, Rennes, 35042, France.</nlm:affiliation></affiliation></author><author><name sortKey="Bretaudeau, Anthony" sort="Bretaudeau, Anthony" uniqKey="Bretaudeau A" first="Anthony" last="Bretaudeau">Anthony Bretaudeau</name><affiliation><nlm:affiliation>INRA, UMR Institut de Génétique, Environnement et Protection des Plantes (IGEPP), BioInformatics Platform for Agroecosystems Arthropods (BIPAA), Campus Beaulieu, Rennes, 35042, France.</nlm:affiliation></affiliation></author><author><name sortKey="Nam, Kiwoong" sort="Nam, Kiwoong" uniqKey="Nam K" first="Kiwoong" last="Nam">Kiwoong Nam</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Gimenez, Sylvie" sort="Gimenez, Sylvie" uniqKey="Gimenez S" first="Sylvie" last="Gimenez">Sylvie Gimenez</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Aury, Jean Marc" sort="Aury, Jean Marc" uniqKey="Aury J" first="Jean-Marc" last="Aury">Jean-Marc Aury</name><affiliation><nlm:affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Duvic, Bernard" sort="Duvic, Bernard" uniqKey="Duvic B" first="Bernard" last="Duvic">Bernard Duvic</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Hilliou, Frederique" sort="Hilliou, Frederique" uniqKey="Hilliou F" first="Frédérique" last="Hilliou">Frédérique Hilliou</name><affiliation><nlm:affiliation>Université Côte d'Azur, INRA, CNRS, Institut Sophia Agrobiotech, 06903 Sophia-Antipolis, France.</nlm:affiliation></affiliation></author><author><name sortKey="Durand, Nicolas" sort="Durand, Nicolas" uniqKey="Durand N" first="Nicolas" last="Durand">Nicolas Durand</name><affiliation><nlm:affiliation>Sorbonne Universités, UPMC University Paris 06, Institute of Ecology and Environmental Sciences of Paris, 75005, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Montagne, Nicolas" sort="Montagne, Nicolas" uniqKey="Montagne N" first="Nicolas" last="Montagné">Nicolas Montagné</name><affiliation><nlm:affiliation>Sorbonne Universités, UPMC University Paris 06, Institute of Ecology and Environmental Sciences of Paris, 75005, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Darboux, Isabelle" sort="Darboux, Isabelle" uniqKey="Darboux I" first="Isabelle" last="Darboux">Isabelle Darboux</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Kuwar, Suyog" sort="Kuwar, Suyog" uniqKey="Kuwar S" first="Suyog" last="Kuwar">Suyog Kuwar</name><affiliation><nlm:affiliation>Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Chertemps, Thomas" sort="Chertemps, Thomas" uniqKey="Chertemps T" first="Thomas" last="Chertemps">Thomas Chertemps</name><affiliation><nlm:affiliation>Sorbonne Universités, UPMC University Paris 06, Institute of Ecology and Environmental Sciences of Paris, 75005, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Siaussat, David" sort="Siaussat, David" uniqKey="Siaussat D" first="David" last="Siaussat">David Siaussat</name><affiliation><nlm:affiliation>Sorbonne Universités, UPMC University Paris 06, Institute of Ecology and Environmental Sciences of Paris, 75005, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Bretschneider, Anne" sort="Bretschneider, Anne" uniqKey="Bretschneider A" first="Anne" last="Bretschneider">Anne Bretschneider</name><affiliation><nlm:affiliation>Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Mone, Yves" sort="Mone, Yves" uniqKey="Mone Y" first="Yves" last="Moné">Yves Moné</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Ahn, Seung Joon" sort="Ahn, Seung Joon" uniqKey="Ahn S" first="Seung-Joon" last="Ahn">Seung-Joon Ahn</name><affiliation><nlm:affiliation>Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="H Nniger, Sabine" sort="H Nniger, Sabine" uniqKey="H Nniger S" first="Sabine" last="H Nniger">Sabine H Nniger</name><affiliation><nlm:affiliation>Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Grenet, Anne Sophie Gosselin" sort="Grenet, Anne Sophie Gosselin" uniqKey="Grenet A" first="Anne-Sophie Gosselin" last="Grenet">Anne-Sophie Gosselin Grenet</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Neunemann, David" sort="Neunemann, David" uniqKey="Neunemann D" first="David" last="Neunemann">David Neunemann</name><affiliation><nlm:affiliation>Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Maumus, Florian" sort="Maumus, Florian" uniqKey="Maumus F" first="Florian" last="Maumus">Florian Maumus</name><affiliation><nlm:affiliation>URGI, INRA, Université Paris-Saclay, 78026, Versailles, France.</nlm:affiliation></affiliation></author><author><name sortKey="Luyten, Isabelle" sort="Luyten, Isabelle" uniqKey="Luyten I" first="Isabelle" last="Luyten">Isabelle Luyten</name><affiliation><nlm:affiliation>URGI, INRA, Université Paris-Saclay, 78026, Versailles, France.</nlm:affiliation></affiliation></author><author><name sortKey="Labadie, Karine" sort="Labadie, Karine" uniqKey="Labadie K" first="Karine" last="Labadie">Karine Labadie</name><affiliation><nlm:affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Xu, Wei" sort="Xu, Wei" uniqKey="Xu W" first="Wei" last="Xu">Wei Xu</name><affiliation><nlm:affiliation>School of Veterinary and Life Sciences, Murdoch University, Murdoch, 6150, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Koutroumpa, Fotini" sort="Koutroumpa, Fotini" uniqKey="Koutroumpa F" first="Fotini" last="Koutroumpa">Fotini Koutroumpa</name><affiliation><nlm:affiliation>INRA, Institute of Ecology and Environmental Sciences, 78000, Versailles, France.</nlm:affiliation></affiliation></author><author><name sortKey="Escoubas, Jean Michel" sort="Escoubas, Jean Michel" uniqKey="Escoubas J" first="Jean-Michel" last="Escoubas">Jean-Michel Escoubas</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Llopis, Angel" sort="Llopis, Angel" uniqKey="Llopis A" first="Angel" last="Llopis">Angel Llopis</name><affiliation><nlm:affiliation>Department of Genetics, Universitat de València, 46100, Burjassot, Valencia, Spain.</nlm:affiliation></affiliation></author><author><name sortKey="Maibeche Coisne, Martine" sort="Maibeche Coisne, Martine" uniqKey="Maibeche Coisne M" first="Martine" last="Maïbèche-Coisne">Martine Maïbèche-Coisne</name><affiliation><nlm:affiliation>Sorbonne Universités, UPMC University Paris 06, Institute of Ecology and Environmental Sciences of Paris, 75005, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Salasc, Fanny" sort="Salasc, Fanny" uniqKey="Salasc F" first="Fanny" last="Salasc">Fanny Salasc</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Tomar, Archana" sort="Tomar, Archana" uniqKey="Tomar A" first="Archana" last="Tomar">Archana Tomar</name><affiliation><nlm:affiliation>Laboratory of Mammalian Genetics, Center for DNA Fingerprinting and Diagnostics (CDFD), Lab block: Tuljaguda (Opp. MJ Market), Nampally, Hyderabad, 500 001, India.</nlm:affiliation></affiliation></author><author><name sortKey="Anderson, Alisha R" sort="Anderson, Alisha R" uniqKey="Anderson A" first="Alisha R" last="Anderson">Alisha R. Anderson</name><affiliation><nlm:affiliation>CSIRO Ecosystem Sciences, Black Mountain, Canberra, ACT 2600, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Khan, Sher Afzal" sort="Khan, Sher Afzal" uniqKey="Khan S" first="Sher Afzal" last="Khan">Sher Afzal Khan</name><affiliation><nlm:affiliation>Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Dumas, Pascaline" sort="Dumas, Pascaline" uniqKey="Dumas P" first="Pascaline" last="Dumas">Pascaline Dumas</name><affiliation><nlm:affiliation>Institute for Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam, Science Park 904, 1090 GE, Amsterdam, The Netherlands.</nlm:affiliation></affiliation></author><author><name sortKey="Orsucci, Marion" sort="Orsucci, Marion" uniqKey="Orsucci M" first="Marion" last="Orsucci">Marion Orsucci</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Guy, Julie" sort="Guy, Julie" uniqKey="Guy J" first="Julie" last="Guy">Julie Guy</name><affiliation><nlm:affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Belser, Caroline" sort="Belser, Caroline" uniqKey="Belser C" first="Caroline" last="Belser">Caroline Belser</name><affiliation><nlm:affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Alberti, Adriana" sort="Alberti, Adriana" uniqKey="Alberti A" first="Adriana" last="Alberti">Adriana Alberti</name><affiliation><nlm:affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Noel, Benjamin" sort="Noel, Benjamin" uniqKey="Noel B" first="Benjamin" last="Noel">Benjamin Noel</name><affiliation><nlm:affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Couloux, Arnaud" sort="Couloux, Arnaud" uniqKey="Couloux A" first="Arnaud" last="Couloux">Arnaud Couloux</name><affiliation><nlm:affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Mercier, Jonathan" sort="Mercier, Jonathan" uniqKey="Mercier J" first="Jonathan" last="Mercier">Jonathan Mercier</name><affiliation><nlm:affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Nidelet, Sabine" sort="Nidelet, Sabine" uniqKey="Nidelet S" first="Sabine" last="Nidelet">Sabine Nidelet</name><affiliation><nlm:affiliation>Plateforme MGX, C/o institut de Génomique Fonctionnelle, 141, rue de la Cardonille, 34094, Montpellier cedex 05, France.</nlm:affiliation></affiliation></author><author><name sortKey="Dubois, Emeric" sort="Dubois, Emeric" uniqKey="Dubois E" first="Emeric" last="Dubois">Emeric Dubois</name><affiliation><nlm:affiliation>Plateforme MGX, C/o institut de Génomique Fonctionnelle, 141, rue de la Cardonille, 34094, Montpellier cedex 05, France.</nlm:affiliation></affiliation></author><author><name sortKey="Liu, Nai Yong" sort="Liu, Nai Yong" uniqKey="Liu N" first="Nai-Yong" last="Liu">Nai-Yong Liu</name><affiliation><nlm:affiliation>Key Laboratory of Forest Disaster Warning and Control of Yunnan Province, Southwest Forestry University, Kunming, 650224, China.</nlm:affiliation></affiliation></author><author><name sortKey="Boulogne, Isabelle" sort="Boulogne, Isabelle" uniqKey="Boulogne I" first="Isabelle" last="Boulogne">Isabelle Boulogne</name><affiliation><nlm:affiliation>Sorbonne Universités, UPMC University Paris 06, Institute of Ecology and Environmental Sciences of Paris, 75005, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Mirabeau, Olivier" sort="Mirabeau, Olivier" uniqKey="Mirabeau O" first="Olivier" last="Mirabeau">Olivier Mirabeau</name><affiliation><nlm:affiliation>INRA, Institute of Ecology and Environmental Sciences, 78000, Versailles, France.</nlm:affiliation></affiliation></author><author><name sortKey="Le Goff, Gaelle" sort="Le Goff, Gaelle" uniqKey="Le Goff G" first="Gaelle" last="Le Goff">Gaelle Le Goff</name><affiliation><nlm:affiliation>Université Côte d'Azur, INRA, CNRS, Institut Sophia Agrobiotech, 06903 Sophia-Antipolis, France.</nlm:affiliation></affiliation></author><author><name sortKey="Gordon, Karl" sort="Gordon, Karl" uniqKey="Gordon K" first="Karl" last="Gordon">Karl Gordon</name><affiliation><nlm:affiliation>CSIRO, Clunies Ross St, (GPO Box 1700), Acton, ACT 2601, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Oakeshott, John" sort="Oakeshott, John" uniqKey="Oakeshott J" first="John" last="Oakeshott">John Oakeshott</name><affiliation><nlm:affiliation>CSIRO, Clunies Ross St, (GPO Box 1700), Acton, ACT 2601, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Consoli, Fernando L" sort="Consoli, Fernando L" uniqKey="Consoli F" first="Fernando L" last="Consoli">Fernando L. Consoli</name><affiliation><nlm:affiliation>Departamento de Entomologia e Acarologia, Escola Superior de Agricultura Luiz de Queiroz, Universidade de São Paulo, Av. Pádua Dias 11, 13418-900, Piracicaba, Brazil.</nlm:affiliation></affiliation></author><author><name sortKey="Volkoff, Anne Nathalie" sort="Volkoff, Anne Nathalie" uniqKey="Volkoff A" first="Anne-Nathalie" last="Volkoff">Anne-Nathalie Volkoff</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Fescemyer, Howard W" sort="Fescemyer, Howard W" uniqKey="Fescemyer H" first="Howard W" last="Fescemyer">Howard W. Fescemyer</name><affiliation><nlm:affiliation>Department of Biology, 208 Mueller Laboratory, The Pennsylvania State University, University Park, 16802, Pennsylvania, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Marden, James H" sort="Marden, James H" uniqKey="Marden J" first="James H" last="Marden">James H. Marden</name><affiliation><nlm:affiliation>Department of Biology, 208 Mueller Laboratory, The Pennsylvania State University, University Park, 16802, Pennsylvania, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Luthe, Dawn S" sort="Luthe, Dawn S" uniqKey="Luthe D" first="Dawn S" last="Luthe">Dawn S. Luthe</name><affiliation><nlm:affiliation>Department of Plant Science, 102 Tyson Building, The Pennsylvania State University, University Park, 16802, Pennsylvania, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Herrero, Salvador" sort="Herrero, Salvador" uniqKey="Herrero S" first="Salvador" last="Herrero">Salvador Herrero</name><affiliation><nlm:affiliation>Department of Genetics, Universitat de València, 46100, Burjassot, Valencia, Spain.</nlm:affiliation></affiliation></author><author><name sortKey="Heckel, David G" sort="Heckel, David G" uniqKey="Heckel D" first="David G" last="Heckel">David G. Heckel</name><affiliation><nlm:affiliation>Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Wincker, Patrick" sort="Wincker, Patrick" uniqKey="Wincker P" first="Patrick" last="Wincker">Patrick Wincker</name><affiliation><nlm:affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Kergoat, Gael J" sort="Kergoat, Gael J" uniqKey="Kergoat G" first="Gael J" last="Kergoat">Gael J. Kergoat</name><affiliation><nlm:affiliation>INRA, UMR1062 CBGP, IRD, CIRAD, Montpellier SupAgro, 755 Avenue du campus Agropolis, 34988, Montferrier/Lez, France.</nlm:affiliation></affiliation></author><author><name sortKey="Amselem, Joelle" sort="Amselem, Joelle" uniqKey="Amselem J" first="Joelle" last="Amselem">Joelle Amselem</name><affiliation><nlm:affiliation>URGI, INRA, Université Paris-Saclay, 78026, Versailles, France.</nlm:affiliation></affiliation></author><author><name sortKey="Quesneville, Hadi" sort="Quesneville, Hadi" uniqKey="Quesneville H" first="Hadi" last="Quesneville">Hadi Quesneville</name><affiliation><nlm:affiliation>URGI, INRA, Université Paris-Saclay, 78026, Versailles, France.</nlm:affiliation></affiliation></author><author><name sortKey="Groot, Astrid T" sort="Groot, Astrid T" uniqKey="Groot A" first="Astrid T" last="Groot">Astrid T. Groot</name><affiliation><nlm:affiliation>Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Jacquin Joly, Emmanuelle" sort="Jacquin Joly, Emmanuelle" uniqKey="Jacquin Joly E" first="Emmanuelle" last="Jacquin-Joly">Emmanuelle Jacquin-Joly</name><affiliation><nlm:affiliation>INRA, Institute of Ecology and Environmental Sciences, 78000, Versailles, France.</nlm:affiliation></affiliation></author><author><name sortKey="Negre, Nicolas" sort="Negre, Nicolas" uniqKey="Negre N" first="Nicolas" last="Nègre">Nicolas Nègre</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France. Nicolas.Negre@univ-montp2.fr.</nlm:affiliation></affiliation></author><author><name sortKey="Lemaitre, Claire" sort="Lemaitre, Claire" uniqKey="Lemaitre C" first="Claire" last="Lemaitre">Claire Lemaitre</name><affiliation><nlm:affiliation>INRIA, IRISA, GenScale, Campus de Beaulieu, Rennes, 35042, France. claire.lemaitre@inria.fr.</nlm:affiliation></affiliation></author><author><name sortKey="Legeai, Fabrice" sort="Legeai, Fabrice" uniqKey="Legeai F" first="Fabrice" last="Legeai">Fabrice Legeai</name><affiliation><nlm:affiliation>INRIA, IRISA, GenScale, Campus de Beaulieu, Rennes, 35042, France.</nlm:affiliation></affiliation></author><author><name sortKey="D Alencon, Emmanuelle" sort="D Alencon, Emmanuelle" uniqKey="D Alencon E" first="Emmanuelle" last="D'Alençon">Emmanuelle D'Alençon</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France. emmanuelle.d-alencon@inra.fr.</nlm:affiliation></affiliation></author><author><name sortKey="Fournier, Philippe" sort="Fournier, Philippe" uniqKey="Fournier P" first="Philippe" last="Fournier">Philippe Fournier</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2017">2017</date><idno type="RBID">pubmed:28947760</idno><idno type="pmid">28947760</idno><idno type="doi">10.1038/s41598-017-10461-4</idno><idno type="wicri:Area/PubMed/Corpus">000577</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000577</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges.</title><author><name sortKey="Gouin, Anais" sort="Gouin, Anais" uniqKey="Gouin A" first="Anaïs" last="Gouin">Anaïs Gouin</name><affiliation><nlm:affiliation>INRIA, IRISA, GenScale, Campus de Beaulieu, Rennes, 35042, France.</nlm:affiliation></affiliation></author><author><name sortKey="Bretaudeau, Anthony" sort="Bretaudeau, Anthony" uniqKey="Bretaudeau A" first="Anthony" last="Bretaudeau">Anthony Bretaudeau</name><affiliation><nlm:affiliation>INRA, UMR Institut de Génétique, Environnement et Protection des Plantes (IGEPP), BioInformatics Platform for Agroecosystems Arthropods (BIPAA), Campus Beaulieu, Rennes, 35042, France.</nlm:affiliation></affiliation></author><author><name sortKey="Nam, Kiwoong" sort="Nam, Kiwoong" uniqKey="Nam K" first="Kiwoong" last="Nam">Kiwoong Nam</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Gimenez, Sylvie" sort="Gimenez, Sylvie" uniqKey="Gimenez S" first="Sylvie" last="Gimenez">Sylvie Gimenez</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Aury, Jean Marc" sort="Aury, Jean Marc" uniqKey="Aury J" first="Jean-Marc" last="Aury">Jean-Marc Aury</name><affiliation><nlm:affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Duvic, Bernard" sort="Duvic, Bernard" uniqKey="Duvic B" first="Bernard" last="Duvic">Bernard Duvic</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Hilliou, Frederique" sort="Hilliou, Frederique" uniqKey="Hilliou F" first="Frédérique" last="Hilliou">Frédérique Hilliou</name><affiliation><nlm:affiliation>Université Côte d'Azur, INRA, CNRS, Institut Sophia Agrobiotech, 06903 Sophia-Antipolis, France.</nlm:affiliation></affiliation></author><author><name sortKey="Durand, Nicolas" sort="Durand, Nicolas" uniqKey="Durand N" first="Nicolas" last="Durand">Nicolas Durand</name><affiliation><nlm:affiliation>Sorbonne Universités, UPMC University Paris 06, Institute of Ecology and Environmental Sciences of Paris, 75005, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Montagne, Nicolas" sort="Montagne, Nicolas" uniqKey="Montagne N" first="Nicolas" last="Montagné">Nicolas Montagné</name><affiliation><nlm:affiliation>Sorbonne Universités, UPMC University Paris 06, Institute of Ecology and Environmental Sciences of Paris, 75005, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Darboux, Isabelle" sort="Darboux, Isabelle" uniqKey="Darboux I" first="Isabelle" last="Darboux">Isabelle Darboux</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Kuwar, Suyog" sort="Kuwar, Suyog" uniqKey="Kuwar S" first="Suyog" last="Kuwar">Suyog Kuwar</name><affiliation><nlm:affiliation>Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Chertemps, Thomas" sort="Chertemps, Thomas" uniqKey="Chertemps T" first="Thomas" last="Chertemps">Thomas Chertemps</name><affiliation><nlm:affiliation>Sorbonne Universités, UPMC University Paris 06, Institute of Ecology and Environmental Sciences of Paris, 75005, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Siaussat, David" sort="Siaussat, David" uniqKey="Siaussat D" first="David" last="Siaussat">David Siaussat</name><affiliation><nlm:affiliation>Sorbonne Universités, UPMC University Paris 06, Institute of Ecology and Environmental Sciences of Paris, 75005, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Bretschneider, Anne" sort="Bretschneider, Anne" uniqKey="Bretschneider A" first="Anne" last="Bretschneider">Anne Bretschneider</name><affiliation><nlm:affiliation>Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Mone, Yves" sort="Mone, Yves" uniqKey="Mone Y" first="Yves" last="Moné">Yves Moné</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Ahn, Seung Joon" sort="Ahn, Seung Joon" uniqKey="Ahn S" first="Seung-Joon" last="Ahn">Seung-Joon Ahn</name><affiliation><nlm:affiliation>Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="H Nniger, Sabine" sort="H Nniger, Sabine" uniqKey="H Nniger S" first="Sabine" last="H Nniger">Sabine H Nniger</name><affiliation><nlm:affiliation>Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Grenet, Anne Sophie Gosselin" sort="Grenet, Anne Sophie Gosselin" uniqKey="Grenet A" first="Anne-Sophie Gosselin" last="Grenet">Anne-Sophie Gosselin Grenet</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Neunemann, David" sort="Neunemann, David" uniqKey="Neunemann D" first="David" last="Neunemann">David Neunemann</name><affiliation><nlm:affiliation>Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Maumus, Florian" sort="Maumus, Florian" uniqKey="Maumus F" first="Florian" last="Maumus">Florian Maumus</name><affiliation><nlm:affiliation>URGI, INRA, Université Paris-Saclay, 78026, Versailles, France.</nlm:affiliation></affiliation></author><author><name sortKey="Luyten, Isabelle" sort="Luyten, Isabelle" uniqKey="Luyten I" first="Isabelle" last="Luyten">Isabelle Luyten</name><affiliation><nlm:affiliation>URGI, INRA, Université Paris-Saclay, 78026, Versailles, France.</nlm:affiliation></affiliation></author><author><name sortKey="Labadie, Karine" sort="Labadie, Karine" uniqKey="Labadie K" first="Karine" last="Labadie">Karine Labadie</name><affiliation><nlm:affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Xu, Wei" sort="Xu, Wei" uniqKey="Xu W" first="Wei" last="Xu">Wei Xu</name><affiliation><nlm:affiliation>School of Veterinary and Life Sciences, Murdoch University, Murdoch, 6150, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Koutroumpa, Fotini" sort="Koutroumpa, Fotini" uniqKey="Koutroumpa F" first="Fotini" last="Koutroumpa">Fotini Koutroumpa</name><affiliation><nlm:affiliation>INRA, Institute of Ecology and Environmental Sciences, 78000, Versailles, France.</nlm:affiliation></affiliation></author><author><name sortKey="Escoubas, Jean Michel" sort="Escoubas, Jean Michel" uniqKey="Escoubas J" first="Jean-Michel" last="Escoubas">Jean-Michel Escoubas</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Llopis, Angel" sort="Llopis, Angel" uniqKey="Llopis A" first="Angel" last="Llopis">Angel Llopis</name><affiliation><nlm:affiliation>Department of Genetics, Universitat de València, 46100, Burjassot, Valencia, Spain.</nlm:affiliation></affiliation></author><author><name sortKey="Maibeche Coisne, Martine" sort="Maibeche Coisne, Martine" uniqKey="Maibeche Coisne M" first="Martine" last="Maïbèche-Coisne">Martine Maïbèche-Coisne</name><affiliation><nlm:affiliation>Sorbonne Universités, UPMC University Paris 06, Institute of Ecology and Environmental Sciences of Paris, 75005, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Salasc, Fanny" sort="Salasc, Fanny" uniqKey="Salasc F" first="Fanny" last="Salasc">Fanny Salasc</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Tomar, Archana" sort="Tomar, Archana" uniqKey="Tomar A" first="Archana" last="Tomar">Archana Tomar</name><affiliation><nlm:affiliation>Laboratory of Mammalian Genetics, Center for DNA Fingerprinting and Diagnostics (CDFD), Lab block: Tuljaguda (Opp. MJ Market), Nampally, Hyderabad, 500 001, India.</nlm:affiliation></affiliation></author><author><name sortKey="Anderson, Alisha R" sort="Anderson, Alisha R" uniqKey="Anderson A" first="Alisha R" last="Anderson">Alisha R. Anderson</name><affiliation><nlm:affiliation>CSIRO Ecosystem Sciences, Black Mountain, Canberra, ACT 2600, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Khan, Sher Afzal" sort="Khan, Sher Afzal" uniqKey="Khan S" first="Sher Afzal" last="Khan">Sher Afzal Khan</name><affiliation><nlm:affiliation>Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Dumas, Pascaline" sort="Dumas, Pascaline" uniqKey="Dumas P" first="Pascaline" last="Dumas">Pascaline Dumas</name><affiliation><nlm:affiliation>Institute for Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam, Science Park 904, 1090 GE, Amsterdam, The Netherlands.</nlm:affiliation></affiliation></author><author><name sortKey="Orsucci, Marion" sort="Orsucci, Marion" uniqKey="Orsucci M" first="Marion" last="Orsucci">Marion Orsucci</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Guy, Julie" sort="Guy, Julie" uniqKey="Guy J" first="Julie" last="Guy">Julie Guy</name><affiliation><nlm:affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Belser, Caroline" sort="Belser, Caroline" uniqKey="Belser C" first="Caroline" last="Belser">Caroline Belser</name><affiliation><nlm:affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Alberti, Adriana" sort="Alberti, Adriana" uniqKey="Alberti A" first="Adriana" last="Alberti">Adriana Alberti</name><affiliation><nlm:affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Noel, Benjamin" sort="Noel, Benjamin" uniqKey="Noel B" first="Benjamin" last="Noel">Benjamin Noel</name><affiliation><nlm:affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Couloux, Arnaud" sort="Couloux, Arnaud" uniqKey="Couloux A" first="Arnaud" last="Couloux">Arnaud Couloux</name><affiliation><nlm:affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Mercier, Jonathan" sort="Mercier, Jonathan" uniqKey="Mercier J" first="Jonathan" last="Mercier">Jonathan Mercier</name><affiliation><nlm:affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Nidelet, Sabine" sort="Nidelet, Sabine" uniqKey="Nidelet S" first="Sabine" last="Nidelet">Sabine Nidelet</name><affiliation><nlm:affiliation>Plateforme MGX, C/o institut de Génomique Fonctionnelle, 141, rue de la Cardonille, 34094, Montpellier cedex 05, France.</nlm:affiliation></affiliation></author><author><name sortKey="Dubois, Emeric" sort="Dubois, Emeric" uniqKey="Dubois E" first="Emeric" last="Dubois">Emeric Dubois</name><affiliation><nlm:affiliation>Plateforme MGX, C/o institut de Génomique Fonctionnelle, 141, rue de la Cardonille, 34094, Montpellier cedex 05, France.</nlm:affiliation></affiliation></author><author><name sortKey="Liu, Nai Yong" sort="Liu, Nai Yong" uniqKey="Liu N" first="Nai-Yong" last="Liu">Nai-Yong Liu</name><affiliation><nlm:affiliation>Key Laboratory of Forest Disaster Warning and Control of Yunnan Province, Southwest Forestry University, Kunming, 650224, China.</nlm:affiliation></affiliation></author><author><name sortKey="Boulogne, Isabelle" sort="Boulogne, Isabelle" uniqKey="Boulogne I" first="Isabelle" last="Boulogne">Isabelle Boulogne</name><affiliation><nlm:affiliation>Sorbonne Universités, UPMC University Paris 06, Institute of Ecology and Environmental Sciences of Paris, 75005, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Mirabeau, Olivier" sort="Mirabeau, Olivier" uniqKey="Mirabeau O" first="Olivier" last="Mirabeau">Olivier Mirabeau</name><affiliation><nlm:affiliation>INRA, Institute of Ecology and Environmental Sciences, 78000, Versailles, France.</nlm:affiliation></affiliation></author><author><name sortKey="Le Goff, Gaelle" sort="Le Goff, Gaelle" uniqKey="Le Goff G" first="Gaelle" last="Le Goff">Gaelle Le Goff</name><affiliation><nlm:affiliation>Université Côte d'Azur, INRA, CNRS, Institut Sophia Agrobiotech, 06903 Sophia-Antipolis, France.</nlm:affiliation></affiliation></author><author><name sortKey="Gordon, Karl" sort="Gordon, Karl" uniqKey="Gordon K" first="Karl" last="Gordon">Karl Gordon</name><affiliation><nlm:affiliation>CSIRO, Clunies Ross St, (GPO Box 1700), Acton, ACT 2601, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Oakeshott, John" sort="Oakeshott, John" uniqKey="Oakeshott J" first="John" last="Oakeshott">John Oakeshott</name><affiliation><nlm:affiliation>CSIRO, Clunies Ross St, (GPO Box 1700), Acton, ACT 2601, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Consoli, Fernando L" sort="Consoli, Fernando L" uniqKey="Consoli F" first="Fernando L" last="Consoli">Fernando L. Consoli</name><affiliation><nlm:affiliation>Departamento de Entomologia e Acarologia, Escola Superior de Agricultura Luiz de Queiroz, Universidade de São Paulo, Av. Pádua Dias 11, 13418-900, Piracicaba, Brazil.</nlm:affiliation></affiliation></author><author><name sortKey="Volkoff, Anne Nathalie" sort="Volkoff, Anne Nathalie" uniqKey="Volkoff A" first="Anne-Nathalie" last="Volkoff">Anne-Nathalie Volkoff</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</nlm:affiliation></affiliation></author><author><name sortKey="Fescemyer, Howard W" sort="Fescemyer, Howard W" uniqKey="Fescemyer H" first="Howard W" last="Fescemyer">Howard W. Fescemyer</name><affiliation><nlm:affiliation>Department of Biology, 208 Mueller Laboratory, The Pennsylvania State University, University Park, 16802, Pennsylvania, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Marden, James H" sort="Marden, James H" uniqKey="Marden J" first="James H" last="Marden">James H. Marden</name><affiliation><nlm:affiliation>Department of Biology, 208 Mueller Laboratory, The Pennsylvania State University, University Park, 16802, Pennsylvania, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Luthe, Dawn S" sort="Luthe, Dawn S" uniqKey="Luthe D" first="Dawn S" last="Luthe">Dawn S. Luthe</name><affiliation><nlm:affiliation>Department of Plant Science, 102 Tyson Building, The Pennsylvania State University, University Park, 16802, Pennsylvania, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Herrero, Salvador" sort="Herrero, Salvador" uniqKey="Herrero S" first="Salvador" last="Herrero">Salvador Herrero</name><affiliation><nlm:affiliation>Department of Genetics, Universitat de València, 46100, Burjassot, Valencia, Spain.</nlm:affiliation></affiliation></author><author><name sortKey="Heckel, David G" sort="Heckel, David G" uniqKey="Heckel D" first="David G" last="Heckel">David G. Heckel</name><affiliation><nlm:affiliation>Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Wincker, Patrick" sort="Wincker, Patrick" uniqKey="Wincker P" first="Patrick" last="Wincker">Patrick Wincker</name><affiliation><nlm:affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</nlm:affiliation></affiliation></author><author><name sortKey="Kergoat, Gael J" sort="Kergoat, Gael J" uniqKey="Kergoat G" first="Gael J" last="Kergoat">Gael J. Kergoat</name><affiliation><nlm:affiliation>INRA, UMR1062 CBGP, IRD, CIRAD, Montpellier SupAgro, 755 Avenue du campus Agropolis, 34988, Montferrier/Lez, France.</nlm:affiliation></affiliation></author><author><name sortKey="Amselem, Joelle" sort="Amselem, Joelle" uniqKey="Amselem J" first="Joelle" last="Amselem">Joelle Amselem</name><affiliation><nlm:affiliation>URGI, INRA, Université Paris-Saclay, 78026, Versailles, France.</nlm:affiliation></affiliation></author><author><name sortKey="Quesneville, Hadi" sort="Quesneville, Hadi" uniqKey="Quesneville H" first="Hadi" last="Quesneville">Hadi Quesneville</name><affiliation><nlm:affiliation>URGI, INRA, Université Paris-Saclay, 78026, Versailles, France.</nlm:affiliation></affiliation></author><author><name sortKey="Groot, Astrid T" sort="Groot, Astrid T" uniqKey="Groot A" first="Astrid T" last="Groot">Astrid T. Groot</name><affiliation><nlm:affiliation>Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Jacquin Joly, Emmanuelle" sort="Jacquin Joly, Emmanuelle" uniqKey="Jacquin Joly E" first="Emmanuelle" last="Jacquin-Joly">Emmanuelle Jacquin-Joly</name><affiliation><nlm:affiliation>INRA, Institute of Ecology and Environmental Sciences, 78000, Versailles, France.</nlm:affiliation></affiliation></author><author><name sortKey="Negre, Nicolas" sort="Negre, Nicolas" uniqKey="Negre N" first="Nicolas" last="Nègre">Nicolas Nègre</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France. Nicolas.Negre@univ-montp2.fr.</nlm:affiliation></affiliation></author><author><name sortKey="Lemaitre, Claire" sort="Lemaitre, Claire" uniqKey="Lemaitre C" first="Claire" last="Lemaitre">Claire Lemaitre</name><affiliation><nlm:affiliation>INRIA, IRISA, GenScale, Campus de Beaulieu, Rennes, 35042, France. claire.lemaitre@inria.fr.</nlm:affiliation></affiliation></author><author><name sortKey="Legeai, Fabrice" sort="Legeai, Fabrice" uniqKey="Legeai F" first="Fabrice" last="Legeai">Fabrice Legeai</name><affiliation><nlm:affiliation>INRIA, IRISA, GenScale, Campus de Beaulieu, Rennes, 35042, France.</nlm:affiliation></affiliation></author><author><name sortKey="D Alencon, Emmanuelle" sort="D Alencon, Emmanuelle" uniqKey="D Alencon E" first="Emmanuelle" last="D'Alençon">Emmanuelle D'Alençon</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France. emmanuelle.d-alencon@inra.fr.</nlm:affiliation></affiliation></author><author><name sortKey="Fournier, Philippe" sort="Fournier, Philippe" uniqKey="Fournier P" first="Philippe" last="Fournier">Philippe Fournier</name><affiliation><nlm:affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Scientific reports</title><idno type="eISSN">2045-2322</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Emergence of polyphagous herbivorous insects entails significant adaptation to recognize, detoxify and digest a variety of host-plants. Despite of its biological and practical importance - since insects eat 20% of crops - no exhaustive analysis of gene repertoires required for adaptations in generalist insect herbivores has previously been performed. The noctuid moth Spodoptera frugiperda ranks as one of the world's worst agricultural pests. This insect is polyphagous while the majority of other lepidopteran herbivores are specialist. It consists of two morphologically indistinguishable strains ("C" and "R") that have different host plant ranges. To describe the evolutionary mechanisms that both enable the emergence of polyphagous herbivory and lead to the shift in the host preference, we analyzed whole genome sequences from laboratory and natural populations of both strains. We observed huge expansions of genes associated with chemosensation and detoxification compared with specialist Lepidoptera. These expansions are largely due to tandem duplication, a possible adaptation mechanism enabling polyphagy. Individuals from natural C and R populations show significant genomic differentiation. We found signatures of positive selection in genes involved in chemoreception, detoxification and digestion, and copy number variation in the two latter gene families, suggesting an adaptive role for structural variation.</div></front></TEI><pubmed><MedlineCitation Status="In-Data-Review" Owner="NLM"><PMID Version="1">28947760</PMID><DateCreated><Year>2017</Year><Month>09</Month><Day>26</Day></DateCreated><DateRevised><Year>2017</Year><Month>10</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2045-2322</ISSN><JournalIssue CitedMedium="Internet"><Volume>7</Volume><Issue>1</Issue><PubDate><Year>2017</Year><Month>Sep</Month><Day>25</Day></PubDate></JournalIssue><Title>Scientific reports</Title><ISOAbbreviation>Sci Rep</ISOAbbreviation></Journal><ArticleTitle>Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges.</ArticleTitle><Pagination><MedlinePgn>11816</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/s41598-017-10461-4</ELocationID><Abstract><AbstractText>Emergence of polyphagous herbivorous insects entails significant adaptation to recognize, detoxify and digest a variety of host-plants. Despite of its biological and practical importance - since insects eat 20% of crops - no exhaustive analysis of gene repertoires required for adaptations in generalist insect herbivores has previously been performed. The noctuid moth Spodoptera frugiperda ranks as one of the world's worst agricultural pests. This insect is polyphagous while the majority of other lepidopteran herbivores are specialist. It consists of two morphologically indistinguishable strains ("C" and "R") that have different host plant ranges. To describe the evolutionary mechanisms that both enable the emergence of polyphagous herbivory and lead to the shift in the host preference, we analyzed whole genome sequences from laboratory and natural populations of both strains. We observed huge expansions of genes associated with chemosensation and detoxification compared with specialist Lepidoptera. These expansions are largely due to tandem duplication, a possible adaptation mechanism enabling polyphagy. Individuals from natural C and R populations show significant genomic differentiation. We found signatures of positive selection in genes involved in chemoreception, detoxification and digestion, and copy number variation in the two latter gene families, suggesting an adaptive role for structural variation.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Gouin</LastName><ForeName>Anaïs</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>INRIA, IRISA, GenScale, Campus de Beaulieu, Rennes, 35042, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bretaudeau</LastName><ForeName>Anthony</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>INRA, UMR Institut de Génétique, Environnement et Protection des Plantes (IGEPP), BioInformatics Platform for Agroecosystems Arthropods (BIPAA), Campus Beaulieu, Rennes, 35042, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>INRIA, IRISA, GenOuest Core Facility, Campus de Beaulieu, Rennes, 35042, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nam</LastName><ForeName>Kiwoong</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gimenez</LastName><ForeName>Sylvie</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Aury</LastName><ForeName>Jean-Marc</ForeName><Initials>JM</Initials><Identifier Source="ORCID">http://orcid.org/0000-0003-1718-3010</Identifier><AffiliationInfo><Affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Duvic</LastName><ForeName>Bernard</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hilliou</LastName><ForeName>Frédérique</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Université Côte d'Azur, INRA, CNRS, Institut Sophia Agrobiotech, 06903 Sophia-Antipolis, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Durand</LastName><ForeName>Nicolas</ForeName><Initials>N</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-3613-2609</Identifier><AffiliationInfo><Affiliation>Sorbonne Universités, UPMC University Paris 06, Institute of Ecology and Environmental Sciences of Paris, 75005, Paris, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Montagné</LastName><ForeName>Nicolas</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>Sorbonne Universités, UPMC University Paris 06, Institute of Ecology and Environmental Sciences of Paris, 75005, Paris, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Darboux</LastName><ForeName>Isabelle</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kuwar</LastName><ForeName>Suyog</ForeName><Initials>S</Initials><Identifier Source="ORCID">http://orcid.org/0000-0001-8055-596X</Identifier><AffiliationInfo><Affiliation>Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chertemps</LastName><ForeName>Thomas</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Sorbonne Universités, UPMC University Paris 06, Institute of Ecology and Environmental Sciences of Paris, 75005, Paris, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Siaussat</LastName><ForeName>David</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Sorbonne Universités, UPMC University Paris 06, Institute of Ecology and Environmental Sciences of Paris, 75005, Paris, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bretschneider</LastName><ForeName>Anne</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Moné</LastName><ForeName>Yves</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ahn</LastName><ForeName>Seung-Joon</ForeName><Initials>SJ</Initials><AffiliationInfo><Affiliation>Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hänniger</LastName><ForeName>Sabine</ForeName><Initials>S</Initials><Identifier Source="ORCID">http://orcid.org/0000-0001-8758-3568</Identifier><AffiliationInfo><Affiliation>Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Grenet</LastName><ForeName>Anne-Sophie Gosselin</ForeName><Initials>AG</Initials><AffiliationInfo><Affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Neunemann</LastName><ForeName>David</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Maumus</LastName><ForeName>Florian</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>URGI, INRA, Université Paris-Saclay, 78026, Versailles, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Luyten</LastName><ForeName>Isabelle</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>URGI, INRA, Université Paris-Saclay, 78026, Versailles, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Labadie</LastName><ForeName>Karine</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Xu</LastName><ForeName>Wei</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>School of Veterinary and Life Sciences, Murdoch University, Murdoch, 6150, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Koutroumpa</LastName><ForeName>Fotini</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>INRA, Institute of Ecology and Environmental Sciences, 78000, Versailles, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Laboratory of Mammalian Genetics, Center for DNA Fingerprinting and Diagnostics (CDFD), Lab block: Tuljaguda (Opp. MJ Market), Nampally, Hyderabad, 500 001, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Escoubas</LastName><ForeName>Jean-Michel</ForeName><Initials>JM</Initials><AffiliationInfo><Affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Llopis</LastName><ForeName>Angel</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Genetics, Universitat de València, 46100, Burjassot, Valencia, Spain.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Estructura de Recerca Interdisciplinar en Biotecnologia i Biomedicina (ERI-BIOTECMED), Universitat de València, 46100, Burjassot, Valencia, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Maïbèche-Coisne</LastName><ForeName>Martine</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Sorbonne Universités, UPMC University Paris 06, Institute of Ecology and Environmental Sciences of Paris, 75005, Paris, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Salasc</LastName><ForeName>Fanny</ForeName><Initials>F</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-6574-1358</Identifier><AffiliationInfo><Affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>EPHE, PSL Research University, UMR1333 - DGIMI, Pathologie comparée des Invertébrés CC101, F-34095, Montpellier cedex 5, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tomar</LastName><ForeName>Archana</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Laboratory of Mammalian Genetics, Center for DNA Fingerprinting and Diagnostics (CDFD), Lab block: Tuljaguda (Opp. MJ Market), Nampally, Hyderabad, 500 001, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Anderson</LastName><ForeName>Alisha R</ForeName><Initials>AR</Initials><AffiliationInfo><Affiliation>CSIRO Ecosystem Sciences, Black Mountain, Canberra, ACT 2600, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Khan</LastName><ForeName>Sher Afzal</ForeName><Initials>SA</Initials><AffiliationInfo><Affiliation>Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dumas</LastName><ForeName>Pascaline</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Institute for Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam, Science Park 904, 1090 GE, Amsterdam, The Netherlands.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Orsucci</LastName><ForeName>Marion</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Guy</LastName><ForeName>Julie</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Belser</LastName><ForeName>Caroline</ForeName><Initials>C</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-8108-9910</Identifier><AffiliationInfo><Affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Alberti</LastName><ForeName>Adriana</ForeName><Initials>A</Initials><Identifier Source="ORCID">http://orcid.org/0000-0003-3372-9423</Identifier><AffiliationInfo><Affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Noel</LastName><ForeName>Benjamin</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Couloux</LastName><ForeName>Arnaud</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mercier</LastName><ForeName>Jonathan</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nidelet</LastName><ForeName>Sabine</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Plateforme MGX, C/o institut de Génomique Fonctionnelle, 141, rue de la Cardonille, 34094, Montpellier cedex 05, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dubois</LastName><ForeName>Emeric</ForeName><Initials>E</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-6052-4178</Identifier><AffiliationInfo><Affiliation>Plateforme MGX, C/o institut de Génomique Fonctionnelle, 141, rue de la Cardonille, 34094, Montpellier cedex 05, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Nai-Yong</ForeName><Initials>NY</Initials><AffiliationInfo><Affiliation>Key Laboratory of Forest Disaster Warning and Control of Yunnan Province, Southwest Forestry University, Kunming, 650224, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Boulogne</LastName><ForeName>Isabelle</ForeName><Initials>I</Initials><Identifier Source="ORCID">http://orcid.org/0000-0001-6810-6504</Identifier><AffiliationInfo><Affiliation>Sorbonne Universités, UPMC University Paris 06, Institute of Ecology and Environmental Sciences of Paris, 75005, Paris, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mirabeau</LastName><ForeName>Olivier</ForeName><Initials>O</Initials><AffiliationInfo><Affiliation>INRA, Institute of Ecology and Environmental Sciences, 78000, Versailles, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Le Goff</LastName><ForeName>Gaelle</ForeName><Initials>G</Initials><Identifier Source="ORCID">http://orcid.org/0000-0003-1973-7136</Identifier><AffiliationInfo><Affiliation>Université Côte d'Azur, INRA, CNRS, Institut Sophia Agrobiotech, 06903 Sophia-Antipolis, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gordon</LastName><ForeName>Karl</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>CSIRO, Clunies Ross St, (GPO Box 1700), Acton, ACT 2601, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Oakeshott</LastName><ForeName>John</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>CSIRO, Clunies Ross St, (GPO Box 1700), Acton, ACT 2601, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Consoli</LastName><ForeName>Fernando L</ForeName><Initials>FL</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-2287-0782</Identifier><AffiliationInfo><Affiliation>Departamento de Entomologia e Acarologia, Escola Superior de Agricultura Luiz de Queiroz, Universidade de São Paulo, Av. Pádua Dias 11, 13418-900, Piracicaba, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Volkoff</LastName><ForeName>Anne-Nathalie</ForeName><Initials>AN</Initials><AffiliationInfo><Affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fescemyer</LastName><ForeName>Howard W</ForeName><Initials>HW</Initials><AffiliationInfo><Affiliation>Department of Biology, 208 Mueller Laboratory, The Pennsylvania State University, University Park, 16802, Pennsylvania, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Marden</LastName><ForeName>James H</ForeName><Initials>JH</Initials><AffiliationInfo><Affiliation>Department of Biology, 208 Mueller Laboratory, The Pennsylvania State University, University Park, 16802, Pennsylvania, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Luthe</LastName><ForeName>Dawn S</ForeName><Initials>DS</Initials><AffiliationInfo><Affiliation>Department of Plant Science, 102 Tyson Building, The Pennsylvania State University, University Park, 16802, Pennsylvania, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Herrero</LastName><ForeName>Salvador</ForeName><Initials>S</Initials><Identifier Source="ORCID">http://orcid.org/0000-0001-5690-2108</Identifier><AffiliationInfo><Affiliation>Department of Genetics, Universitat de València, 46100, Burjassot, Valencia, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Heckel</LastName><ForeName>David G</ForeName><Initials>DG</Initials><AffiliationInfo><Affiliation>Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wincker</LastName><ForeName>Patrick</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>CEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>CNRS UMR 8030, 2 rue Gaston Crémieux, 91000, Evry, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Université d'Evry Val D'Essonne, 91000, Evry, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kergoat</LastName><ForeName>Gael J</ForeName><Initials>GJ</Initials><AffiliationInfo><Affiliation>INRA, UMR1062 CBGP, IRD, CIRAD, Montpellier SupAgro, 755 Avenue du campus Agropolis, 34988, Montferrier/Lez, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Amselem</LastName><ForeName>Joelle</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>URGI, INRA, Université Paris-Saclay, 78026, Versailles, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Quesneville</LastName><ForeName>Hadi</ForeName><Initials>H</Initials><Identifier Source="ORCID">http://orcid.org/0000-0003-3001-4908</Identifier><AffiliationInfo><Affiliation>URGI, INRA, Université Paris-Saclay, 78026, Versailles, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Groot</LastName><ForeName>Astrid T</ForeName><Initials>AT</Initials><AffiliationInfo><Affiliation>Department of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Institute for Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam, Science Park 904, 1090 GE, Amsterdam, The Netherlands.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jacquin-Joly</LastName><ForeName>Emmanuelle</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>INRA, Institute of Ecology and Environmental Sciences, 78000, Versailles, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nègre</LastName><ForeName>Nicolas</ForeName><Initials>N</Initials><Identifier Source="ORCID">http://orcid.org/0000-0001-9727-3416</Identifier><AffiliationInfo><Affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France. Nicolas.Negre@univ-montp2.fr.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lemaitre</LastName><ForeName>Claire</ForeName><Initials>C</Initials><Identifier Source="ORCID">http://orcid.org/0000-0001-8675-170X</Identifier><AffiliationInfo><Affiliation>INRIA, IRISA, GenScale, Campus de Beaulieu, Rennes, 35042, France. claire.lemaitre@inria.fr.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Legeai</LastName><ForeName>Fabrice</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>INRIA, IRISA, GenScale, Campus de Beaulieu, Rennes, 35042, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>d'Alençon</LastName><ForeName>Emmanuelle</ForeName><Initials>E</Initials><Identifier Source="ORCID">http://orcid.org/0000-0001-8994-0119</Identifier><AffiliationInfo><Affiliation>DGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France. emmanuelle.d-alencon@inra.fr.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fournier</LastName><ForeName>Philippe</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>DGIMI, INRA, Univ. 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Version="1">22118469</PMID></CommentsCorrections></CommentsCorrectionsList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>02</Month><Day>07</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2017</Year><Month>04</Month><Day>19</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2017</Year><Month>9</Month><Day>27</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2017</Year><Month>9</Month><Day>28</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2017</Year><Month>9</Month><Day>28</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">28947760</ArticleId><ArticleId IdType="doi">10.1038/s41598-017-10461-4</ArticleId><ArticleId IdType="pii">10.1038/s41598-017-10461-4</ArticleId><ArticleId 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