The evolution of Lachancea thermotolerans is driven by geographical determination, anthropisation and flux between different ecosystems.
Identifieur interne : 000495 ( PubMed/Corpus ); précédent : 000494; suivant : 000496The evolution of Lachancea thermotolerans is driven by geographical determination, anthropisation and flux between different ecosystems.
Auteurs : Ana Hranilovic ; Marina Bely ; Isabelle Masneuf-Pomarede ; Vladimir Jiranek ; Warren AlbertinSource :
- PloS one [ 1932-6203 ] ; 2017.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : DNA, Fungal.
- genetics : Kluyveromyces, Vitis.
- growth & development : Kluyveromyces.
- microbiology : Vitis, Wine.
- Cluster Analysis, Domestication, Ecosystem, Evolution, Molecular, Microsatellite Repeats, Phenotype, Phylogeography.
Abstract
The yeast Lachancea thermotolerans (formerly Kluyveromyces thermotolerans) is a species with remarkable, yet underexplored, biotechnological potential. This ubiquist occupies a range of natural and anthropic habitats covering a wide geographic span. To gain an insight into L. thermotolerans population diversity and structure, 172 isolates sourced from diverse habitats worldwide were analysed using a set of 14 microsatellite markers. The resultant clustering revealed that the evolution of L. thermotolerans has been driven by the geography and ecological niche of the isolation sources. Isolates originating from anthropic environments, in particular grapes and wine, were genetically close, thus suggesting domestication events within the species. The observed clustering was further validated by several means including, population structure analysis, F-statistics, Mantel's test and the analysis of molecular variance (AMOVA). Phenotypic performance of isolates was tested using several growth substrates and physicochemical conditions, providing added support for the clustering. Altogether, this study sheds light on the genotypic and phenotypic diversity of L. thermotolerans, contributing to a better understanding of the population structure, ecology and evolution of this non-Saccharomyces yeast.
DOI: 10.1371/journal.pone.0184652
PubMed: 28910346
Links to Exploration step
pubmed:28910346Le document en format XML
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last="Masneuf-Pomarede">Isabelle Masneuf-Pomarede</name><affiliation><nlm:affiliation>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon, France.</nlm:affiliation></affiliation></author><author><name sortKey="Jiranek, Vladimir" sort="Jiranek, Vladimir" uniqKey="Jiranek V" first="Vladimir" last="Jiranek">Vladimir Jiranek</name><affiliation><nlm:affiliation>The Australian Research Council Training Centre for Innovative Wine Production, Adelaide, South Australia, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Albertin, Warren" sort="Albertin, Warren" uniqKey="Albertin W" first="Warren" last="Albertin">Warren Albertin</name><affiliation><nlm:affiliation>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon, France.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2017">2017</date><idno type="RBID">pubmed:28910346</idno><idno type="pmid">28910346</idno><idno type="doi">10.1371/journal.pone.0184652</idno><idno type="wicri:Area/PubMed/Corpus">000495</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000495</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">The evolution of Lachancea thermotolerans is driven by geographical determination, anthropisation and flux between different ecosystems.</title><author><name sortKey="Hranilovic, Ana" sort="Hranilovic, Ana" uniqKey="Hranilovic A" first="Ana" last="Hranilovic">Ana Hranilovic</name><affiliation><nlm:affiliation>The Australian Research Council Training Centre for Innovative Wine Production, Adelaide, South Australia, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Bely, Marina" sort="Bely, Marina" uniqKey="Bely M" first="Marina" last="Bely">Marina Bely</name><affiliation><nlm:affiliation>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon, France.</nlm:affiliation></affiliation></author><author><name sortKey="Masneuf Pomarede, Isabelle" sort="Masneuf Pomarede, Isabelle" uniqKey="Masneuf Pomarede I" first="Isabelle" last="Masneuf-Pomarede">Isabelle Masneuf-Pomarede</name><affiliation><nlm:affiliation>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon, France.</nlm:affiliation></affiliation></author><author><name sortKey="Jiranek, Vladimir" sort="Jiranek, Vladimir" uniqKey="Jiranek V" first="Vladimir" last="Jiranek">Vladimir Jiranek</name><affiliation><nlm:affiliation>The Australian Research Council Training Centre for Innovative Wine Production, Adelaide, South Australia, Australia.</nlm:affiliation></affiliation></author><author><name sortKey="Albertin, Warren" sort="Albertin, Warren" uniqKey="Albertin W" first="Warren" last="Albertin">Warren Albertin</name><affiliation><nlm:affiliation>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon, France.</nlm:affiliation></affiliation></author></analytic><series><title level="j">PloS one</title><idno type="eISSN">1932-6203</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Cluster Analysis</term><term>DNA, Fungal (genetics)</term><term>Domestication</term><term>Ecosystem</term><term>Evolution, Molecular</term><term>Kluyveromyces (genetics)</term><term>Kluyveromyces (growth & development)</term><term>Microsatellite Repeats</term><term>Phenotype</term><term>Phylogeography</term><term>Vitis (genetics)</term><term>Vitis (microbiology)</term><term>Wine (microbiology)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Fungal</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Kluyveromyces</term><term>Vitis</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Kluyveromyces</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Vitis</term><term>Wine</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Cluster Analysis</term><term>Domestication</term><term>Ecosystem</term><term>Evolution, Molecular</term><term>Microsatellite Repeats</term><term>Phenotype</term><term>Phylogeography</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The yeast Lachancea thermotolerans (formerly Kluyveromyces thermotolerans) is a species with remarkable, yet underexplored, biotechnological potential. This ubiquist occupies a range of natural and anthropic habitats covering a wide geographic span. To gain an insight into L. thermotolerans population diversity and structure, 172 isolates sourced from diverse habitats worldwide were analysed using a set of 14 microsatellite markers. The resultant clustering revealed that the evolution of L. thermotolerans has been driven by the geography and ecological niche of the isolation sources. Isolates originating from anthropic environments, in particular grapes and wine, were genetically close, thus suggesting domestication events within the species. The observed clustering was further validated by several means including, population structure analysis, F-statistics, Mantel's test and the analysis of molecular variance (AMOVA). Phenotypic performance of isolates was tested using several growth substrates and physicochemical conditions, providing added support for the clustering. Altogether, this study sheds light on the genotypic and phenotypic diversity of L. thermotolerans, contributing to a better understanding of the population structure, ecology and evolution of this non-Saccharomyces yeast.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">28910346</PMID><DateCreated><Year>2017</Year><Month>09</Month><Day>14</Day></DateCreated><DateCompleted><Year>2017</Year><Month>10</Month><Day>13</Day></DateCompleted><DateRevised><Year>2017</Year><Month>10</Month><Day>13</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">1932-6203</ISSN><JournalIssue CitedMedium="Internet"><Volume>12</Volume><Issue>9</Issue><PubDate><Year>2017</Year></PubDate></JournalIssue><Title>PloS one</Title><ISOAbbreviation>PLoS ONE</ISOAbbreviation></Journal><ArticleTitle>The evolution of Lachancea thermotolerans is driven by geographical determination, anthropisation and flux between different ecosystems.</ArticleTitle><Pagination><MedlinePgn>e0184652</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.pone.0184652</ELocationID><Abstract><AbstractText>The yeast Lachancea thermotolerans (formerly Kluyveromyces thermotolerans) is a species with remarkable, yet underexplored, biotechnological potential. This ubiquist occupies a range of natural and anthropic habitats covering a wide geographic span. To gain an insight into L. thermotolerans population diversity and structure, 172 isolates sourced from diverse habitats worldwide were analysed using a set of 14 microsatellite markers. The resultant clustering revealed that the evolution of L. thermotolerans has been driven by the geography and ecological niche of the isolation sources. Isolates originating from anthropic environments, in particular grapes and wine, were genetically close, thus suggesting domestication events within the species. The observed clustering was further validated by several means including, population structure analysis, F-statistics, Mantel's test and the analysis of molecular variance (AMOVA). Phenotypic performance of isolates was tested using several growth substrates and physicochemical conditions, providing added support for the clustering. Altogether, this study sheds light on the genotypic and phenotypic diversity of L. thermotolerans, contributing to a better understanding of the population structure, ecology and evolution of this non-Saccharomyces yeast.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Hranilovic</LastName><ForeName>Ana</ForeName><Initials>A</Initials><Identifier Source="ORCID">http://orcid.org/0000-0003-4602-959X</Identifier><AffiliationInfo><Affiliation>The Australian Research Council Training Centre for Innovative Wine Production, Adelaide, South Australia, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Wine and Food Science, The University of Adelaide, Urbrrae, South Australia, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bely</LastName><ForeName>Marina</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Masneuf-Pomarede</LastName><ForeName>Isabelle</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Bordeaux Sciences Agro, Gradignan, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jiranek</LastName><ForeName>Vladimir</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>The Australian Research Council Training Centre for Innovative Wine Production, Adelaide, South Australia, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Wine and Food Science, The University of Adelaide, Urbrrae, South Australia, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Albertin</LastName><ForeName>Warren</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>ENSCBP, Bordeaux INP, Pessac, France.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>09</Month><Day>14</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>PLoS One</MedlineTA><NlmUniqueID>101285081</NlmUniqueID><ISSNLinking>1932-6203</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004271">DNA, 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MajorTopicYN="N">Phenotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D058974" MajorTopicYN="N">Phylogeography</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D027843" MajorTopicYN="N">Vitis</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014920" MajorTopicYN="N">Wine</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>06</Month><Day>25</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2017</Year><Month>08</Month><Day>28</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2017</Year><Month>9</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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