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Rare variants analysis of cutaneous malignant melanoma genes in Parkinson's disease.

Identifieur interne : 001789 ( PubMed/Checkpoint ); précédent : 001788; suivant : 001790

Rare variants analysis of cutaneous malignant melanoma genes in Parkinson's disease.

Auteurs : S J Lubbe [Royaume-Uni] ; V. Escott-Price [Royaume-Uni] ; A. Brice [France] ; T. Gasser [Allemagne] ; A M Pittman [Royaume-Uni] ; J. Bras [Royaume-Uni] ; J. Hardy [Royaume-Uni] ; P. Heutink [Pays-Bas] ; N M Wood [Royaume-Uni] ; A B Singleton [États-Unis] ; D G Grosset [Royaume-Uni] ; C B Carroll [Royaume-Uni] ; M H Law [Australie] ; F. Demenais [France] ; M M Iles [Royaume-Uni] ; D T Bishop [Royaume-Uni] ; J. Newton-Bishop [Royaume-Uni] ; N M Williams [Royaume-Uni] ; H R Morris [Royaume-Uni]

Source :

RBID : pubmed:27640074

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Abstract

A shared genetic susceptibility between cutaneous malignant melanoma (CMM) and Parkinson's disease (PD) has been suggested. We investigated this by assessing the contribution of rare variants in genes involved in CMM to PD risk. We studied rare variation across 29 CMM risk genes using high-quality genotype data in 6875 PD cases and 6065 controls and sought to replicate findings using whole-exome sequencing data from a second independent cohort totaling 1255 PD cases and 473 controls. No statistically significant enrichment of rare variants across all genes, per gene, or for any individual variant was detected in either cohort. There were nonsignificant trends toward different carrier frequencies between PD cases and controls, under different inheritance models, in the following CMM risk genes: BAP1, DCC, ERBB4, KIT, MAPK2, MITF, PTEN, and TP53. The very rare TYR p.V275F variant, which is a pathogenic allele for recessive albinism, was more common in PD cases than controls in 3 independent cohorts. Tyrosinase, encoded by TYR, is the rate-limiting enzyme for the production of neuromelanin, and has a role in the production of dopamine. These results suggest a possible role for another gene in the dopamine-biosynthetic pathway in susceptibility to neurodegenerative Parkinsonism, but further studies in larger PD cohorts are needed to accurately determine the role of these genes/variants in disease pathogenesis.

DOI: 10.1016/j.neurobiolaging.2016.07.013
PubMed: 27640074


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<name sortKey="Newton Bishop, J" sort="Newton Bishop, J" uniqKey="Newton Bishop J" first="J" last="Newton-Bishop">J. Newton-Bishop</name>
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<nlm:affiliation>Department of Clinical Neuroscience, UCL Institute of Neurology, London, United Kingdom.</nlm:affiliation>
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<wicri:regionArea>Department of Clinical Neuroscience, UCL Institute of Neurology, London</wicri:regionArea>
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<name sortKey="Escott Price, V" sort="Escott Price, V" uniqKey="Escott Price V" first="V" last="Escott-Price">V. Escott-Price</name>
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<nlm:affiliation>Institute of Psychological Medicine and Clinical Neurosciences, Medical Research Council Centre for Neuropsychiatric Genetics and Genomics, Department of Psychological Medicine and Neurology, Cardiff University School of Medicine, Cardiff, United Kingdom.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
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<name sortKey="Brice, A" sort="Brice, A" uniqKey="Brice A" first="A" last="Brice">A. Brice</name>
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<country xml:lang="fr">France</country>
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<nlm:affiliation>Department of Molecular Neuroscience, UCL Institute of Neurology, London, United Kingdom.</nlm:affiliation>
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<name sortKey="Bras, J" sort="Bras, J" uniqKey="Bras J" first="J" last="Bras">J. Bras</name>
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<nlm:affiliation>Department of Molecular Neuroscience, UCL Institute of Neurology, London, United Kingdom.</nlm:affiliation>
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<name sortKey="Hardy, J" sort="Hardy, J" uniqKey="Hardy J" first="J" last="Hardy">J. Hardy</name>
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<nlm:affiliation>Department of Clinical Genetics, Section of Medical Genomics, VU University Medical Centre, Amsterdam, The Netherlands.</nlm:affiliation>
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<wicri:regionArea>Department of Clinical Genetics, Section of Medical Genomics, VU University Medical Centre, Amsterdam</wicri:regionArea>
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<name sortKey="Wood, N M" sort="Wood, N M" uniqKey="Wood N" first="N M" last="Wood">N M Wood</name>
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<name sortKey="Singleton, A B" sort="Singleton, A B" uniqKey="Singleton A" first="A B" last="Singleton">A B Singleton</name>
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<nlm:affiliation>Laboratory of Neurogenetics, National Institute on Aging, National Institutes of Health, Bethesda, MD, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Laboratory of Neurogenetics, National Institute on Aging, National Institutes of Health, Bethesda, MD</wicri:regionArea>
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<name sortKey="Grosset, D G" sort="Grosset, D G" uniqKey="Grosset D" first="D G" last="Grosset">D G Grosset</name>
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<nlm:affiliation>Department of Neurology, Institute of Neurological Sciences, Queen Elizabeth University Hospital, Glasgow, United Kingdom.</nlm:affiliation>
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<name sortKey="Carroll, C B" sort="Carroll, C B" uniqKey="Carroll C" first="C B" last="Carroll">C B Carroll</name>
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<nlm:affiliation>Plymouth University Peninsula Schools of Medicine and Dentistry, Plymouth, United Kingdom.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
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<name sortKey="Law, M H" sort="Law, M H" uniqKey="Law M" first="M H" last="Law">M H Law</name>
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<nlm:affiliation>Statistical Genetics, QIMR Berghofer Medical Research Institute, Brisbane, Queensland, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
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<name sortKey="Demenais, F" sort="Demenais, F" uniqKey="Demenais F" first="F" last="Demenais">F. Demenais</name>
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<term>Dopamine (biosynthesis)</term>
<term>Genetic Association Studies</term>
<term>Genetic Predisposition to Disease (genetics)</term>
<term>Genetic Variation (genetics)</term>
<term>Genotype</term>
<term>Humans</term>
<term>Melanins (biosynthesis)</term>
<term>Melanoma (genetics)</term>
<term>Membrane Glycoproteins (genetics)</term>
<term>Monophenol Monooxygenase</term>
<term>Oxidoreductases (genetics)</term>
<term>Parkinson Disease (genetics)</term>
<term>Pigmentation (genetics)</term>
<term>Receptor, ErbB-4 (genetics)</term>
<term>Receptors, Cell Surface (genetics)</term>
<term>Risk</term>
<term>Skin Neoplasms (genetics)</term>
<term>Tumor Suppressor Proteins (genetics)</term>
<term>Ubiquitin Thiolesterase (genetics)</term>
</keywords>
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<term>Dopamine (biosynthèse)</term>
<term>Glycoprotéines membranaires (génétique)</term>
<term>Génotype</term>
<term>Humains</term>
<term>Maladie de Parkinson (génétique)</term>
<term>Monophenol monooxygenase</term>
<term>Mélanines (biosynthèse)</term>
<term>Mélanome (génétique)</term>
<term>Oxidoreductases (génétique)</term>
<term>Pigmentation (génétique)</term>
<term>Protéines suppresseurs de tumeurs (génétique)</term>
<term>Prédisposition génétique à une maladie (génétique)</term>
<term>Risque</term>
<term>Récepteur ErbB-4 (génétique)</term>
<term>Récepteurs de surface cellulaire (génétique)</term>
<term>Tumeurs cutanées (génétique)</term>
<term>Ubiquitin thiolesterase (génétique)</term>
<term>Variation génétique (génétique)</term>
<term>Études d'associations génétiques</term>
<term>Études de cohortes</term>
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<term>Dopamine</term>
<term>Melanins</term>
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<term>Dopamine</term>
<term>Mélanines</term>
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<term>Genetic Predisposition to Disease</term>
<term>Genetic Variation</term>
<term>Melanoma</term>
<term>Membrane Glycoproteins</term>
<term>Oxidoreductases</term>
<term>Parkinson Disease</term>
<term>Pigmentation</term>
<term>Receptor, ErbB-4</term>
<term>Receptors, Cell Surface</term>
<term>Skin Neoplasms</term>
<term>Tumor Suppressor Proteins</term>
<term>Ubiquitin Thiolesterase</term>
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<term>Glycoprotéines membranaires</term>
<term>Maladie de Parkinson</term>
<term>Mélanome</term>
<term>Oxidoreductases</term>
<term>Pigmentation</term>
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<term>Prédisposition génétique à une maladie</term>
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<term>Récepteurs de surface cellulaire</term>
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<term>Variation génétique</term>
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<term>Cohort Studies</term>
<term>Genetic Association Studies</term>
<term>Genotype</term>
<term>Humans</term>
<term>Monophenol Monooxygenase</term>
<term>Risk</term>
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<term>Humains</term>
<term>Monophenol monooxygenase</term>
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<div type="abstract" xml:lang="en">A shared genetic susceptibility between cutaneous malignant melanoma (CMM) and Parkinson's disease (PD) has been suggested. We investigated this by assessing the contribution of rare variants in genes involved in CMM to PD risk. We studied rare variation across 29 CMM risk genes using high-quality genotype data in 6875 PD cases and 6065 controls and sought to replicate findings using whole-exome sequencing data from a second independent cohort totaling 1255 PD cases and 473 controls. No statistically significant enrichment of rare variants across all genes, per gene, or for any individual variant was detected in either cohort. There were nonsignificant trends toward different carrier frequencies between PD cases and controls, under different inheritance models, in the following CMM risk genes: BAP1, DCC, ERBB4, KIT, MAPK2, MITF, PTEN, and TP53. The very rare TYR p.V275F variant, which is a pathogenic allele for recessive albinism, was more common in PD cases than controls in 3 independent cohorts. Tyrosinase, encoded by TYR, is the rate-limiting enzyme for the production of neuromelanin, and has a role in the production of dopamine. These results suggest a possible role for another gene in the dopamine-biosynthetic pathway in susceptibility to neurodegenerative Parkinsonism, but further studies in larger PD cohorts are needed to accurately determine the role of these genes/variants in disease pathogenesis.</div>
</front>
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<Year>2016</Year>
<Month>09</Month>
<Day>18</Day>
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<Year>2017</Year>
<Month>10</Month>
<Day>12</Day>
</DateCompleted>
<DateRevised>
<Year>2017</Year>
<Month>11</Month>
<Day>16</Day>
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<ISSN IssnType="Electronic">1558-1497</ISSN>
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<Volume>48</Volume>
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<Year>2016</Year>
<Month>Dec</Month>
</PubDate>
</JournalIssue>
<Title>Neurobiology of aging</Title>
<ISOAbbreviation>Neurobiol. Aging</ISOAbbreviation>
</Journal>
<ArticleTitle>Rare variants analysis of cutaneous malignant melanoma genes in Parkinson's disease.</ArticleTitle>
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<Abstract>
<AbstractText>A shared genetic susceptibility between cutaneous malignant melanoma (CMM) and Parkinson's disease (PD) has been suggested. We investigated this by assessing the contribution of rare variants in genes involved in CMM to PD risk. We studied rare variation across 29 CMM risk genes using high-quality genotype data in 6875 PD cases and 6065 controls and sought to replicate findings using whole-exome sequencing data from a second independent cohort totaling 1255 PD cases and 473 controls. No statistically significant enrichment of rare variants across all genes, per gene, or for any individual variant was detected in either cohort. There were nonsignificant trends toward different carrier frequencies between PD cases and controls, under different inheritance models, in the following CMM risk genes: BAP1, DCC, ERBB4, KIT, MAPK2, MITF, PTEN, and TP53. The very rare TYR p.V275F variant, which is a pathogenic allele for recessive albinism, was more common in PD cases than controls in 3 independent cohorts. Tyrosinase, encoded by TYR, is the rate-limiting enzyme for the production of neuromelanin, and has a role in the production of dopamine. These results suggest a possible role for another gene in the dopamine-biosynthetic pathway in susceptibility to neurodegenerative Parkinsonism, but further studies in larger PD cohorts are needed to accurately determine the role of these genes/variants in disease pathogenesis.</AbstractText>
<CopyrightInformation>Copyright © 2016 The Author(s). Published by Elsevier Inc. All rights reserved.</CopyrightInformation>
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<LastName>Lubbe</LastName>
<ForeName>S J</ForeName>
<Initials>SJ</Initials>
<AffiliationInfo>
<Affiliation>Department of Clinical Neuroscience, UCL Institute of Neurology, London, United Kingdom.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Escott-Price</LastName>
<ForeName>V</ForeName>
<Initials>V</Initials>
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<Affiliation>Institute of Psychological Medicine and Clinical Neurosciences, Medical Research Council Centre for Neuropsychiatric Genetics and Genomics, Department of Psychological Medicine and Neurology, Cardiff University School of Medicine, Cardiff, United Kingdom.</Affiliation>
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<LastName>Grosset</LastName>
<ForeName>D G</ForeName>
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<Affiliation>Department of Neurology, Institute of Neurological Sciences, Queen Elizabeth University Hospital, Glasgow, United Kingdom.</Affiliation>
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<LastName>Carroll</LastName>
<ForeName>C B</ForeName>
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<LastName>Law</LastName>
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<LastName>Demenais</LastName>
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<Initials>F</Initials>
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<LastName>Bishop</LastName>
<ForeName>D T</ForeName>
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<Country>United Kingdom</Country>
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