Functional diversity and redundancy across fish gut, sediment and water bacterial communities.
Identifieur interne : 000C05 ( PubMed/Checkpoint ); précédent : 000C04; suivant : 000C06Functional diversity and redundancy across fish gut, sediment and water bacterial communities.
Auteurs : Arthur Escalas [États-Unis] ; Marc Troussellier [France] ; Tong Yuan [États-Unis] ; Thierry Bouvier [France] ; Corinne Bouvier [France] ; Maud A. Mouchet [France] ; Domingo Flores Hernandez [Mexique] ; Julia Ramos Miranda [Mexique] ; Jizhong Zhou [États-Unis] ; David Mouillot [France]Source :
- Environmental microbiology [ 1462-2920 ] ; 2017.
Abstract
This article explores the functional diversity and redundancy in a bacterial metacommunity constituted of three habitats (sediment, water column and fish gut) in a coastal lagoon under anthropogenic pressure. Comprehensive functional gene arrays covering a wide range of ecological processes and stress resistance genes to estimate the functional potential of bacterial communities were used. Then, diversity partitioning was used to characterize functional diversity and redundancy within (α), between (β) and across (γ) habitats. It was showed that all local communities exhibit a highly diversified potential for the realization of key ecological processes and resistance to various environmental conditions, supporting the growing evidence that macro-organisms microbiomes harbour a high functional potential and are integral components of functional gene dynamics in aquatic bacterial metacommunities. Several levels of functional redundancy at different scales of the bacterial metacommunity were observed (within local communities, within habitats and at the metacommunity level). The results suggested a high potential for the realization of spatial ecological insurance within this ecosystem, that is, the functional compensation among microorganisms for the realization and maintenance of key ecological processes, within and across habitats. Finally, the role of macro-organisms as dispersal vectors of microbes and their potential influence on marine metacommunity dynamics were discussed.
DOI: 10.1111/1462-2920.13822
PubMed: 28618142
Affiliations:
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University of Oklahoma, Norman, OK, 73019, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, 73019</wicri:regionArea><wicri:noRegion>73019</wicri:noRegion></affiliation></author><author><name sortKey="Troussellier, Marc" sort="Troussellier, Marc" uniqKey="Troussellier M" first="Marc" last="Troussellier">Marc Troussellier</name><affiliation wicri:level="1"><nlm:affiliation>UMR 9190 MARBEC, IRD-CNRS-UM-IFREMER, Université Montpellier, 34095 Montpellier Cedex, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>UMR 9190 MARBEC, IRD-CNRS-UM-IFREMER, Université Montpellier, 34095 Montpellier Cedex</wicri:regionArea><wicri:noRegion>34095 Montpellier Cedex</wicri:noRegion><wicri:noRegion>34095 Montpellier Cedex</wicri:noRegion></affiliation></author><author><name sortKey="Yuan, Tong" sort="Yuan, Tong" uniqKey="Yuan T" first="Tong" last="Yuan">Tong Yuan</name><affiliation wicri:level="1"><nlm:affiliation>Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, 73019, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, 73019</wicri:regionArea><wicri:noRegion>73019</wicri:noRegion></affiliation></author><author><name sortKey="Bouvier, Thierry" sort="Bouvier, Thierry" uniqKey="Bouvier T" first="Thierry" last="Bouvier">Thierry Bouvier</name><affiliation wicri:level="1"><nlm:affiliation>UMR 9190 MARBEC, IRD-CNRS-UM-IFREMER, Université Montpellier, 34095 Montpellier Cedex, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>UMR 9190 MARBEC, IRD-CNRS-UM-IFREMER, Université Montpellier, 34095 Montpellier Cedex</wicri:regionArea><wicri:noRegion>34095 Montpellier Cedex</wicri:noRegion><wicri:noRegion>34095 Montpellier Cedex</wicri:noRegion></affiliation></author><author><name sortKey="Bouvier, Corinne" sort="Bouvier, Corinne" uniqKey="Bouvier C" first="Corinne" last="Bouvier">Corinne Bouvier</name><affiliation wicri:level="1"><nlm:affiliation>UMR 9190 MARBEC, IRD-CNRS-UM-IFREMER, Université Montpellier, 34095 Montpellier Cedex, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>UMR 9190 MARBEC, IRD-CNRS-UM-IFREMER, Université Montpellier, 34095 Montpellier Cedex</wicri:regionArea><wicri:noRegion>34095 Montpellier Cedex</wicri:noRegion><wicri:noRegion>34095 Montpellier Cedex</wicri:noRegion></affiliation></author><author><name sortKey="Mouchet, Maud A" sort="Mouchet, Maud A" uniqKey="Mouchet M" first="Maud A" last="Mouchet">Maud A. Mouchet</name><affiliation wicri:level="1"><nlm:affiliation>UMR 7204 CESCO, Muséum d'Histoire Naturelle, 55 rue Buffon, Paris, 75005, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>UMR 7204 CESCO, Muséum d'Histoire Naturelle, 55 rue Buffon, Paris, 75005</wicri:regionArea><wicri:noRegion>75005</wicri:noRegion><wicri:noRegion>75005</wicri:noRegion></affiliation></author><author><name sortKey="Flores Hernandez, Domingo" sort="Flores Hernandez, Domingo" uniqKey="Flores Hernandez D" first="Domingo" last="Flores Hernandez">Domingo Flores Hernandez</name><affiliation wicri:level="1"><nlm:affiliation>Centro de Ecología, Pesquerias y Oceanographia de Golfo de México, Universidad Autonoma de Campeche, Campeche, Mexico.</nlm:affiliation><country xml:lang="fr">Mexique</country><wicri:regionArea>Centro de Ecología, Pesquerias y Oceanographia de Golfo de México, Universidad Autonoma de Campeche, Campeche</wicri:regionArea><wicri:noRegion>Campeche</wicri:noRegion></affiliation></author><author><name sortKey="Ramos Miranda, Julia" sort="Ramos Miranda, Julia" uniqKey="Ramos Miranda J" first="Julia" last="Ramos Miranda">Julia Ramos Miranda</name><affiliation wicri:level="1"><nlm:affiliation>Centro de Ecología, Pesquerias y Oceanographia de Golfo de México, Universidad Autonoma de Campeche, Campeche, Mexico.</nlm:affiliation><country xml:lang="fr">Mexique</country><wicri:regionArea>Centro de Ecología, Pesquerias y Oceanographia de Golfo de México, Universidad Autonoma de Campeche, Campeche</wicri:regionArea><wicri:noRegion>Campeche</wicri:noRegion></affiliation></author><author><name sortKey="Zhou, Jizhong" sort="Zhou, Jizhong" uniqKey="Zhou J" first="Jizhong" last="Zhou">Jizhong Zhou</name><affiliation wicri:level="1"><nlm:affiliation>Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, 73019, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, 73019</wicri:regionArea><wicri:noRegion>73019</wicri:noRegion></affiliation></author><author><name sortKey="Mouillot, David" sort="Mouillot, David" uniqKey="Mouillot D" first="David" last="Mouillot">David Mouillot</name><affiliation wicri:level="1"><nlm:affiliation>UMR 9190 MARBEC, IRD-CNRS-UM-IFREMER, Université Montpellier, 34095 Montpellier Cedex, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>UMR 9190 MARBEC, IRD-CNRS-UM-IFREMER, Université Montpellier, 34095 Montpellier Cedex</wicri:regionArea><wicri:noRegion>34095 Montpellier Cedex</wicri:noRegion><wicri:noRegion>34095 Montpellier Cedex</wicri:noRegion></affiliation></author></analytic><series><title level="j">Environmental microbiology</title><idno type="eISSN">1462-2920</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">This article explores the functional diversity and redundancy in a bacterial metacommunity constituted of three habitats (sediment, water column and fish gut) in a coastal lagoon under anthropogenic pressure. Comprehensive functional gene arrays covering a wide range of ecological processes and stress resistance genes to estimate the functional potential of bacterial communities were used. Then, diversity partitioning was used to characterize functional diversity and redundancy within (α), between (β) and across (γ) habitats. It was showed that all local communities exhibit a highly diversified potential for the realization of key ecological processes and resistance to various environmental conditions, supporting the growing evidence that macro-organisms microbiomes harbour a high functional potential and are integral components of functional gene dynamics in aquatic bacterial metacommunities. Several levels of functional redundancy at different scales of the bacterial metacommunity were observed (within local communities, within habitats and at the metacommunity level). The results suggested a high potential for the realization of spatial ecological insurance within this ecosystem, that is, the functional compensation among microorganisms for the realization and maintenance of key ecological processes, within and across habitats. Finally, the role of macro-organisms as dispersal vectors of microbes and their potential influence on marine metacommunity dynamics were discussed.</div></front></TEI><pubmed><MedlineCitation Status="In-Process" Owner="NLM"><PMID Version="1">28618142</PMID><DateCreated><Year>2017</Year><Month>06</Month><Day>15</Day></DateCreated><DateRevised><Year>2017</Year><Month>08</Month><Day>17</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1462-2920</ISSN><JournalIssue CitedMedium="Internet"><Volume>19</Volume><Issue>8</Issue><PubDate><Year>2017</Year><Month>Aug</Month></PubDate></JournalIssue><Title>Environmental microbiology</Title><ISOAbbreviation>Environ. Microbiol.</ISOAbbreviation></Journal><ArticleTitle>Functional diversity and redundancy across fish gut, sediment and water bacterial communities.</ArticleTitle><Pagination><MedlinePgn>3268-3282</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/1462-2920.13822</ELocationID><Abstract><AbstractText>This article explores the functional diversity and redundancy in a bacterial metacommunity constituted of three habitats (sediment, water column and fish gut) in a coastal lagoon under anthropogenic pressure. Comprehensive functional gene arrays covering a wide range of ecological processes and stress resistance genes to estimate the functional potential of bacterial communities were used. Then, diversity partitioning was used to characterize functional diversity and redundancy within (α), between (β) and across (γ) habitats. It was showed that all local communities exhibit a highly diversified potential for the realization of key ecological processes and resistance to various environmental conditions, supporting the growing evidence that macro-organisms microbiomes harbour a high functional potential and are integral components of functional gene dynamics in aquatic bacterial metacommunities. Several levels of functional redundancy at different scales of the bacterial metacommunity were observed (within local communities, within habitats and at the metacommunity level). The results suggested a high potential for the realization of spatial ecological insurance within this ecosystem, that is, the functional compensation among microorganisms for the realization and maintenance of key ecological processes, within and across habitats. Finally, the role of macro-organisms as dispersal vectors of microbes and their potential influence on marine metacommunity dynamics were discussed.</AbstractText><CopyrightInformation>© 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Escalas</LastName><ForeName>Arthur</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, 73019, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Troussellier</LastName><ForeName>Marc</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>UMR 9190 MARBEC, IRD-CNRS-UM-IFREMER, Université Montpellier, 34095 Montpellier Cedex, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yuan</LastName><ForeName>Tong</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, 73019, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bouvier</LastName><ForeName>Thierry</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>UMR 9190 MARBEC, IRD-CNRS-UM-IFREMER, Université Montpellier, 34095 Montpellier Cedex, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bouvier</LastName><ForeName>Corinne</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>UMR 9190 MARBEC, IRD-CNRS-UM-IFREMER, Université Montpellier, 34095 Montpellier Cedex, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mouchet</LastName><ForeName>Maud A</ForeName><Initials>MA</Initials><AffiliationInfo><Affiliation>UMR 7204 CESCO, Muséum d'Histoire Naturelle, 55 rue Buffon, Paris, 75005, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Flores Hernandez</LastName><ForeName>Domingo</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Centro de Ecología, Pesquerias y Oceanographia de Golfo de México, Universidad Autonoma de Campeche, Campeche, Mexico.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ramos Miranda</LastName><ForeName>Julia</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Centro de Ecología, Pesquerias y Oceanographia de Golfo de México, Universidad Autonoma de Campeche, Campeche, Mexico.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhou</LastName><ForeName>Jizhong</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, 73019, USA.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, 100084, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mouillot</LastName><ForeName>David</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>UMR 9190 MARBEC, IRD-CNRS-UM-IFREMER, Université Montpellier, 34095 Montpellier Cedex, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD, 4811, Australia.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>07</Month><Day>17</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Environ Microbiol</MedlineTA><NlmUniqueID>100883692</NlmUniqueID><ISSNLinking>1462-2912</ISSNLinking></MedlineJournalInfo></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2016</Year><Month>08</Month><Day>25</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2017</Year><Month>06</Month><Day>07</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2017</Year><Month>6</Month><Day>16</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2017</Year><Month>6</Month><Day>16</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2017</Year><Month>6</Month><Day>16</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId 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sort="Bouvier, Thierry" uniqKey="Bouvier T" first="Thierry" last="Bouvier">Thierry Bouvier</name><name sortKey="Mouchet, Maud A" sort="Mouchet, Maud A" uniqKey="Mouchet M" first="Maud A" last="Mouchet">Maud A. Mouchet</name><name sortKey="Mouillot, David" sort="Mouillot, David" uniqKey="Mouillot D" first="David" last="Mouillot">David Mouillot</name></country><country name="Mexique"><noRegion><name sortKey="Flores Hernandez, Domingo" sort="Flores Hernandez, Domingo" uniqKey="Flores Hernandez D" first="Domingo" last="Flores Hernandez">Domingo Flores Hernandez</name></noRegion><name sortKey="Ramos Miranda, Julia" sort="Ramos Miranda, Julia" uniqKey="Ramos Miranda J" first="Julia" last="Ramos Miranda">Julia Ramos Miranda</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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