Genetic diversity and evolution of Pneumocystis fungi infecting wild Southeast Asian murid rodents.
Identifieur interne : 000B81 ( PubMed/Checkpoint ); précédent : 000B80; suivant : 000B82Genetic diversity and evolution of Pneumocystis fungi infecting wild Southeast Asian murid rodents.
Auteurs : Alice Latinne [France] ; François Bezé [France] ; Laurence Delhaes [France] ; Muriel Pottier [France] ; Nausicaa Gantois [France] ; Julien Nguyen [France] ; Kim Blasdell [Australie] ; Eduardo Dei-Cas [France] ; Serge Morand [France] ; Magali Chabé [France]Source :
- Parasitology [ 1469-8161 ] ; 2017.
Abstract
Pneumocystis organisms are airborne-transmitted fungal parasites that infect the lungs of numerous mammalian species with strong host specificity. In this study, we investigated the genetic diversity and host specificity of Pneumocystis organisms infecting Southeast Asian murid rodents through PCR amplification of two mitochondrial genes and tested the co-phylogeny hypothesis among these fungi and their rodent hosts. Pneumocystis DNA was detected in 215 of 445 wild rodents belonging to 18 Southeast Asian murid species. Three of the Pneumocystis lineages retrieved in our phylogenetic trees correspond to known Pneumocystis species, but some of the remaining lineages may correspond to new undescribed species. Most of these Pneumocystis species infect several rodent species or genera and some sequence types are shared among several host species and genera. These results indicated a weaker host specificity of Pneumocystis species infecting rodents than previously thought. Our co-phylogenetic analyses revealed a complex evolutionary history among Pneumocystis and their rodent hosts. Even if a significant global signal of co-speciation has been detected, co-speciation alone is not sufficient to explain the observed co-phylogenetic pattern and several host switches are inferred. These findings conflict with the traditional view of a prolonged process of co-evolution and co-speciation of Pneumocystis and their hosts.
DOI: 10.1017/S0031182017001883
PubMed: 29117878
Affiliations:
- Australie, France
- Hauts-de-France, Languedoc-Roussillon, Nord-Pas-de-Calais, Occitanie (région administrative)
- Dunkerque, Lille, Montpellier
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Lille, CNRS, Inserm, CHU de Lille, Institut Pasteur de Lille, U1019 - UMR 8204 - CIIL - Center for Infection and Immunity of Lille,Lille,France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Univ. Lille, CNRS, Inserm, CHU de Lille, Institut Pasteur de Lille, U1019 - UMR 8204 - CIIL - Center for Infection and Immunity of Lille,Lille</wicri:regionArea><placeName><region type="region">Hauts-de-France</region><region type="old region">Nord-Pas-de-Calais</region><settlement type="city">Lille</settlement></placeName></affiliation></author><author><name sortKey="Pottier, Muriel" sort="Pottier, Muriel" uniqKey="Pottier M" first="Muriel" last="Pottier">Muriel Pottier</name><affiliation wicri:level="3"><nlm:affiliation>Univ. Lille, CNRS, Inserm, CHU de Lille, Institut Pasteur de Lille, U1019 - UMR 8204 - CIIL - Center for Infection and Immunity of Lille,Lille,France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Univ. 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Lille, CNRS, Inserm, CHU de Lille, Institut Pasteur de Lille, U1019 - UMR 8204 - CIIL - Center for Infection and Immunity of Lille,Lille</wicri:regionArea><placeName><region type="region">Hauts-de-France</region><region type="old region">Nord-Pas-de-Calais</region><settlement type="city">Lille</settlement></placeName></affiliation></author><author><name sortKey="Blasdell, Kim" sort="Blasdell, Kim" uniqKey="Blasdell K" first="Kim" last="Blasdell">Kim Blasdell</name><affiliation wicri:level="1"><nlm:affiliation>CSIRO Health and Biosecurity Business Unit,Australian Animal Health Laboratory,Geelong,Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>CSIRO Health and Biosecurity Business Unit,Australian Animal Health Laboratory,Geelong</wicri:regionArea><wicri:noRegion>Geelong</wicri:noRegion></affiliation></author><author><name sortKey="Dei Cas, Eduardo" sort="Dei Cas, Eduardo" uniqKey="Dei Cas E" first="Eduardo" last="Dei-Cas">Eduardo Dei-Cas</name><affiliation wicri:level="3"><nlm:affiliation>Univ. Lille, CNRS, Inserm, CHU de Lille, Institut Pasteur de Lille, U1019 - UMR 8204 - CIIL - Center for Infection and Immunity of Lille,Lille,France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Univ. Lille, CNRS, Inserm, CHU de Lille, Institut Pasteur de Lille, U1019 - UMR 8204 - CIIL - Center for Infection and Immunity of Lille,Lille</wicri:regionArea><placeName><region type="region">Hauts-de-France</region><region type="old region">Nord-Pas-de-Calais</region><settlement type="city">Lille</settlement></placeName></affiliation></author><author><name sortKey="Morand, Serge" sort="Morand, Serge" uniqKey="Morand S" first="Serge" last="Morand">Serge Morand</name><affiliation wicri:level="3"><nlm:affiliation>Institut des Sciences de l'Evolution (ISEM), UMR 5554 CNRS-IRD-UM2, CC65, Université de Montpellier 2,Montpellier,France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut des Sciences de l'Evolution (ISEM), UMR 5554 CNRS-IRD-UM2, CC65, Université de Montpellier 2,Montpellier</wicri:regionArea><placeName><region type="region">Occitanie (région administrative)</region><region type="old region">Languedoc-Roussillon</region><settlement type="city">Montpellier</settlement></placeName></affiliation></author><author><name sortKey="Chabe, Magali" sort="Chabe, Magali" uniqKey="Chabe M" first="Magali" last="Chabé">Magali Chabé</name><affiliation wicri:level="3"><nlm:affiliation>Univ. Lille, CNRS, Inserm, CHU de Lille, Institut Pasteur de Lille, U1019 - UMR 8204 - CIIL - Center for Infection and Immunity of Lille,Lille,France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Univ. Lille, CNRS, Inserm, CHU de Lille, Institut Pasteur de Lille, U1019 - UMR 8204 - CIIL - Center for Infection and Immunity of Lille,Lille</wicri:regionArea><placeName><region type="region">Hauts-de-France</region><region type="old region">Nord-Pas-de-Calais</region><settlement type="city">Lille</settlement></placeName></affiliation></author></analytic><series><title level="j">Parasitology</title><idno type="eISSN">1469-8161</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Pneumocystis organisms are airborne-transmitted fungal parasites that infect the lungs of numerous mammalian species with strong host specificity. In this study, we investigated the genetic diversity and host specificity of Pneumocystis organisms infecting Southeast Asian murid rodents through PCR amplification of two mitochondrial genes and tested the co-phylogeny hypothesis among these fungi and their rodent hosts. Pneumocystis DNA was detected in 215 of 445 wild rodents belonging to 18 Southeast Asian murid species. Three of the Pneumocystis lineages retrieved in our phylogenetic trees correspond to known Pneumocystis species, but some of the remaining lineages may correspond to new undescribed species. Most of these Pneumocystis species infect several rodent species or genera and some sequence types are shared among several host species and genera. These results indicated a weaker host specificity of Pneumocystis species infecting rodents than previously thought. Our co-phylogenetic analyses revealed a complex evolutionary history among Pneumocystis and their rodent hosts. Even if a significant global signal of co-speciation has been detected, co-speciation alone is not sufficient to explain the observed co-phylogenetic pattern and several host switches are inferred. These findings conflict with the traditional view of a prolonged process of co-evolution and co-speciation of Pneumocystis and their hosts.</div></front></TEI><pubmed><MedlineCitation Status="Publisher" Owner="NLM"><PMID Version="1">29117878</PMID><DateCreated><Year>2017</Year><Month>11</Month><Day>09</Day></DateCreated><DateRevised><Year>2017</Year><Month>11</Month><Day>09</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1469-8161</ISSN><JournalIssue CitedMedium="Internet"><PubDate><Year>2017</Year><Month>Nov</Month><Day>09</Day></PubDate></JournalIssue><Title>Parasitology</Title><ISOAbbreviation>Parasitology</ISOAbbreviation></Journal><ArticleTitle>Genetic diversity and evolution of Pneumocystis fungi infecting wild Southeast Asian murid rodents.</ArticleTitle><Pagination><MedlinePgn>1-16</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1017/S0031182017001883</ELocationID><Abstract><AbstractText>Pneumocystis organisms are airborne-transmitted fungal parasites that infect the lungs of numerous mammalian species with strong host specificity. In this study, we investigated the genetic diversity and host specificity of Pneumocystis organisms infecting Southeast Asian murid rodents through PCR amplification of two mitochondrial genes and tested the co-phylogeny hypothesis among these fungi and their rodent hosts. Pneumocystis DNA was detected in 215 of 445 wild rodents belonging to 18 Southeast Asian murid species. Three of the Pneumocystis lineages retrieved in our phylogenetic trees correspond to known Pneumocystis species, but some of the remaining lineages may correspond to new undescribed species. Most of these Pneumocystis species infect several rodent species or genera and some sequence types are shared among several host species and genera. These results indicated a weaker host specificity of Pneumocystis species infecting rodents than previously thought. Our co-phylogenetic analyses revealed a complex evolutionary history among Pneumocystis and their rodent hosts. Even if a significant global signal of co-speciation has been detected, co-speciation alone is not sufficient to explain the observed co-phylogenetic pattern and several host switches are inferred. These findings conflict with the traditional view of a prolonged process of co-evolution and co-speciation of Pneumocystis and their hosts.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Latinne</LastName><ForeName>Alice</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Institut des Sciences de l'Evolution (ISEM), UMR 5554 CNRS-IRD-UM2, CC65, Université de Montpellier 2,Montpellier,France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bezé</LastName><ForeName>François</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Medical Laboratory,Dunkerque Hospital,Dunkerque,France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Delhaes</LastName><ForeName>Laurence</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Univ. Lille, CNRS, Inserm, CHU de Lille, Institut Pasteur de Lille, U1019 - UMR 8204 - CIIL - Center for Infection and Immunity of Lille,Lille,France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pottier</LastName><ForeName>Muriel</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Univ. Lille, CNRS, Inserm, CHU de Lille, Institut Pasteur de Lille, U1019 - UMR 8204 - CIIL - Center for Infection and Immunity of Lille,Lille,France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gantois</LastName><ForeName>Nausicaa</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>Univ. Lille, CNRS, Inserm, CHU de Lille, Institut Pasteur de Lille, U1019 - UMR 8204 - CIIL - Center for Infection and Immunity of Lille,Lille,France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nguyen</LastName><ForeName>Julien</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Univ. Lille, CNRS, Inserm, CHU de Lille, Institut Pasteur de Lille, U1019 - UMR 8204 - CIIL - Center for Infection and Immunity of Lille,Lille,France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Blasdell</LastName><ForeName>Kim</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>CSIRO Health and Biosecurity Business Unit,Australian Animal Health Laboratory,Geelong,Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dei-Cas</LastName><ForeName>Eduardo</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Univ. Lille, CNRS, Inserm, CHU de Lille, Institut Pasteur de Lille, U1019 - UMR 8204 - CIIL - Center for Infection and Immunity of Lille,Lille,France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Morand</LastName><ForeName>Serge</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Institut des Sciences de l'Evolution (ISEM), UMR 5554 CNRS-IRD-UM2, CC65, Université de Montpellier 2,Montpellier,France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chabé</LastName><ForeName>Magali</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Univ. Lille, CNRS, Inserm, CHU de Lille, Institut Pasteur de Lille, U1019 - UMR 8204 - CIIL - Center for Infection and Immunity of Lille,Lille,France.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>11</Month><Day>09</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Parasitology</MedlineTA><NlmUniqueID>0401121</NlmUniqueID><ISSNLinking>0031-1820</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Pneumocystis</Keyword><Keyword MajorTopicYN="N">Murid rodents</Keyword><Keyword MajorTopicYN="N">Rattini</Keyword><Keyword MajorTopicYN="N">Southeast Asia</Keyword><Keyword MajorTopicYN="N">co-phylogeny</Keyword><Keyword MajorTopicYN="N">co-speciation</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2017</Year><Month>11</Month><Day>10</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2017</Year><Month>11</Month><Day>10</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2017</Year><Month>11</Month><Day>10</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>aheadofprint</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">29117878</ArticleId><ArticleId IdType="pii">S0031182017001883</ArticleId><ArticleId IdType="doi">10.1017/S0031182017001883</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Australie</li><li>France</li></country><region><li>Hauts-de-France</li><li>Languedoc-Roussillon</li><li>Nord-Pas-de-Calais</li><li>Occitanie (région administrative)</li></region><settlement><li>Dunkerque</li><li>Lille</li><li>Montpellier</li></settlement></list><tree><country name="France"><region name="Occitanie (région administrative)"><name sortKey="Latinne, Alice" sort="Latinne, Alice" uniqKey="Latinne A" first="Alice" last="Latinne">Alice Latinne</name></region><name sortKey="Beze, Francois" sort="Beze, Francois" uniqKey="Beze F" first="François" last="Bezé">François Bezé</name><name sortKey="Chabe, Magali" sort="Chabe, Magali" uniqKey="Chabe M" first="Magali" last="Chabé">Magali Chabé</name><name sortKey="Dei Cas, Eduardo" sort="Dei Cas, Eduardo" uniqKey="Dei Cas E" first="Eduardo" last="Dei-Cas">Eduardo Dei-Cas</name><name sortKey="Delhaes, Laurence" sort="Delhaes, Laurence" uniqKey="Delhaes L" first="Laurence" last="Delhaes">Laurence Delhaes</name><name sortKey="Gantois, Nausicaa" sort="Gantois, Nausicaa" uniqKey="Gantois N" first="Nausicaa" last="Gantois">Nausicaa Gantois</name><name sortKey="Morand, Serge" sort="Morand, Serge" uniqKey="Morand S" first="Serge" last="Morand">Serge Morand</name><name sortKey="Nguyen, Julien" sort="Nguyen, Julien" uniqKey="Nguyen J" first="Julien" last="Nguyen">Julien Nguyen</name><name sortKey="Pottier, Muriel" sort="Pottier, Muriel" uniqKey="Pottier M" first="Muriel" last="Pottier">Muriel Pottier</name></country><country name="Australie"><noRegion><name sortKey="Blasdell, Kim" sort="Blasdell, Kim" uniqKey="Blasdell K" first="Kim" last="Blasdell">Kim Blasdell</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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