Multiple Geographic Origins of Commensalism and Complex Dispersal History of Black Rats
Identifieur interne : 002A76 ( Pmc/Curation ); précédent : 002A75; suivant : 002A77Multiple Geographic Origins of Commensalism and Complex Dispersal History of Black Rats
Auteurs : Ken P. Aplin [Australie] ; Hitoshi Suzuki [Japon] ; Alejandro A. Chinen [Japon] ; R. Terry Chesser [États-Unis] ; José Ten Have [Australie] ; Stephen C. Donnellan [Australie] ; Jeremy Austin [Australie] ; Angela Frost [Australie] ; Jean Paul Gonzalez [Thaïlande] ; Vincent Herbreteau [Thaïlande] ; Francois Catzeflis [France] ; Julien Soubrier [Australie] ; Yin-Ping Fang [Taïwan] ; Judith Robins [Nouvelle-Zélande] ; Elizabeth Matisoo-Smith [Nouvelle-Zélande] ; Amanda D. S. Bastos [Afrique du Sud] ; Ibnu Maryanto [Indonésie] ; Martua H. Sinaga [Indonésie] ; Christiane Denys [France] ; Ronald A. Van Den Bussche [États-Unis] ; Chris Conroy [États-Unis] ; Kevin Rowe [États-Unis] ; Alan Cooper [Australie]Source :
- PLoS ONE [ 1932-6203 ] ; 2011.
Abstract
The Black Rat (
Url:
DOI: 10.1371/journal.pone.0026357
PubMed: 22073158
PubMed Central: 3206810
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Aplin</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Australian National Wildlife Collection, CSIRO Ecosystem Sciences, Canberra, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Australian National Wildlife Collection, CSIRO Ecosystem Sciences, Canberra</wicri:regionArea></affiliation></author><author><name sortKey="Suzuki, Hitoshi" sort="Suzuki, Hitoshi" uniqKey="Suzuki H" first="Hitoshi" last="Suzuki">Hitoshi Suzuki</name><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Graduate School of Environmental Earth Science, Hokkaido University, Sapporo, Japan</addr-line></nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea>Graduate School of Environmental Earth Science, Hokkaido University, Sapporo</wicri:regionArea></affiliation></author><author><name sortKey="Chinen, Alejandro A" sort="Chinen, Alejandro A" uniqKey="Chinen A" first="Alejandro A." last="Chinen">Alejandro A. Chinen</name><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Graduate School of Environmental Earth Science, Hokkaido University, Sapporo, Japan</addr-line></nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea>Graduate School of Environmental Earth Science, Hokkaido University, Sapporo</wicri:regionArea></affiliation></author><author><name sortKey="Chesser, R Terry" sort="Chesser, R Terry" uniqKey="Chesser R" first="R. Terry" last="Chesser">R. Terry Chesser</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Smithsonian Institution, Division of Birds, Washington D.C., United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Smithsonian Institution, Division of Birds, Washington D.C.</wicri:regionArea></affiliation></author><author><name sortKey="Ten Have, Jose" sort="Ten Have, Jose" uniqKey="Ten Have J" first="José" last="Ten Have">José Ten Have</name><affiliation wicri:level="1"><nlm:aff id="aff4"><addr-line>Office of the Gene Technology Regulator, Canberra, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Office of the Gene Technology Regulator, Canberra</wicri:regionArea></affiliation></author><author><name sortKey="Donnellan, Stephen C" sort="Donnellan, Stephen C" uniqKey="Donnellan S" first="Stephen C." last="Donnellan">Stephen C. Donnellan</name><affiliation wicri:level="1"><nlm:aff id="aff5"><addr-line>South Australian Museum, and Australian Centre for Evolutionary Biology and Biodiversity, University of Adelaide, Adelaide, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>South Australian Museum, and Australian Centre for Evolutionary Biology and Biodiversity, University of Adelaide, Adelaide</wicri:regionArea></affiliation></author><author><name sortKey="Austin, Jeremy" sort="Austin, Jeremy" uniqKey="Austin J" first="Jeremy" last="Austin">Jeremy Austin</name><affiliation wicri:level="1"><nlm:aff id="aff6"><addr-line>Australian Centre for Ancient DNA, University of Adelaide, Adelaide, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Centre for Ancient DNA, University of Adelaide, Adelaide</wicri:regionArea></affiliation></author><author><name sortKey="Frost, Angela" sort="Frost, Angela" uniqKey="Frost A" first="Angela" last="Frost">Angela Frost</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Australian National Wildlife Collection, CSIRO Ecosystem Sciences, Canberra, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Australian National Wildlife Collection, CSIRO Ecosystem Sciences, Canberra</wicri:regionArea></affiliation></author><author><name sortKey="Gonzalez, Jean Paul" sort="Gonzalez, Jean Paul" uniqKey="Gonzalez J" first="Jean Paul" last="Gonzalez">Jean Paul Gonzalez</name><affiliation wicri:level="1"><nlm:aff id="aff7"><addr-line>Institut de Recherche pour le Developpement, Research Unit 178, Center for Vectors and Vector Diseases, Faculty of Science, Mahidol University, Nakhonpathom, Thailand</addr-line></nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea>Institut de Recherche pour le Developpement, Research Unit 178, Center for Vectors and Vector Diseases, Faculty of Science, Mahidol University, Nakhonpathom</wicri:regionArea></affiliation></author><author><name sortKey="Herbreteau, Vincent" sort="Herbreteau, Vincent" uniqKey="Herbreteau V" first="Vincent" last="Herbreteau">Vincent Herbreteau</name><affiliation wicri:level="1"><nlm:aff id="aff7"><addr-line>Institut de Recherche pour le Developpement, Research Unit 178, Center for Vectors and Vector Diseases, Faculty of Science, Mahidol University, Nakhonpathom, Thailand</addr-line></nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea>Institut de Recherche pour le Developpement, Research Unit 178, Center for Vectors and Vector Diseases, Faculty of Science, Mahidol University, Nakhonpathom</wicri:regionArea></affiliation></author><author><name sortKey="Catzeflis, Francois" sort="Catzeflis, Francois" uniqKey="Catzeflis F" first="Francois" last="Catzeflis">Francois Catzeflis</name><affiliation wicri:level="1"><nlm:aff id="aff8"><addr-line>Laboratoire de Paléontologie, Phylogénie et Paléobiologie, Institut des Sciences de l'Evolution, Université Montpellier II, Montpellier, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Laboratoire de Paléontologie, Phylogénie et Paléobiologie, Institut des Sciences de l'Evolution, Université Montpellier II, Montpellier</wicri:regionArea></affiliation></author><author><name sortKey="Soubrier, Julien" sort="Soubrier, Julien" uniqKey="Soubrier J" first="Julien" last="Soubrier">Julien Soubrier</name><affiliation wicri:level="1"><nlm:aff id="aff6"><addr-line>Australian Centre for Ancient DNA, University of Adelaide, Adelaide, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Centre for Ancient DNA, University of Adelaide, Adelaide</wicri:regionArea></affiliation></author><author><name sortKey="Fang, Yin Ping" sort="Fang, Yin Ping" uniqKey="Fang Y" first="Yin-Ping" last="Fang">Yin-Ping Fang</name><affiliation wicri:level="1"><nlm:aff id="aff9"><addr-line>Department of Biological Resources, National Chiayi University, Chiayi City, Taiwan</addr-line></nlm:aff><country xml:lang="fr">Taïwan</country><wicri:regionArea>Department of Biological Resources, National Chiayi University, Chiayi City</wicri:regionArea></affiliation></author><author><name sortKey="Robins, Judith" sort="Robins, Judith" uniqKey="Robins J" first="Judith" last="Robins">Judith Robins</name><affiliation wicri:level="1"><nlm:aff id="aff10"><addr-line>Department of Anthropology, University of Auckland, Auckland, New Zealand</addr-line></nlm:aff><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea>Department of Anthropology, University of Auckland, Auckland</wicri:regionArea></affiliation></author><author><name sortKey="Matisoo Smith, Elizabeth" sort="Matisoo Smith, Elizabeth" uniqKey="Matisoo Smith E" first="Elizabeth" last="Matisoo-Smith">Elizabeth Matisoo-Smith</name><affiliation wicri:level="1"><nlm:aff id="aff11"><addr-line>Department of Anatomy & Structural Biology, University of Otago, Dunedin, New Zealand</addr-line></nlm:aff><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea>Department of Anatomy & Structural Biology, University of Otago, Dunedin</wicri:regionArea></affiliation></author><author><name sortKey="Bastos, Amanda D S" sort="Bastos, Amanda D S" uniqKey="Bastos A" first="Amanda D. S." last="Bastos">Amanda D. S. Bastos</name><affiliation wicri:level="1"><nlm:aff id="aff12"><addr-line>Mammal Research Institute, Department of Zoology & Entomology, University of Pretoria, Pretoria, South Africa</addr-line></nlm:aff><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea>Mammal Research Institute, Department of Zoology & Entomology, University of Pretoria, Pretoria</wicri:regionArea></affiliation></author><author><name sortKey="Maryanto, Ibnu" sort="Maryanto, Ibnu" uniqKey="Maryanto I" first="Ibnu" last="Maryanto">Ibnu Maryanto</name><affiliation wicri:level="1"><nlm:aff id="aff13"><addr-line>Indonesian Institute of Sciences (LIPI) & Museum Bogoriense, Cibinong, West Java, Indonesia</addr-line></nlm:aff><country xml:lang="fr">Indonésie</country><wicri:regionArea>Indonesian Institute of Sciences (LIPI) & Museum Bogoriense, Cibinong, West Java</wicri:regionArea></affiliation></author><author><name sortKey="Sinaga, Martua H" sort="Sinaga, Martua H" uniqKey="Sinaga M" first="Martua H." last="Sinaga">Martua H. Sinaga</name><affiliation wicri:level="1"><nlm:aff id="aff13"><addr-line>Indonesian Institute of Sciences (LIPI) & Museum Bogoriense, Cibinong, West Java, Indonesia</addr-line></nlm:aff><country xml:lang="fr">Indonésie</country><wicri:regionArea>Indonesian Institute of Sciences (LIPI) & Museum Bogoriense, Cibinong, West Java</wicri:regionArea></affiliation></author><author><name sortKey="Denys, Christiane" sort="Denys, Christiane" uniqKey="Denys C" first="Christiane" last="Denys">Christiane Denys</name><affiliation wicri:level="1"><nlm:aff id="aff14"><addr-line>Department of Systematics and Evolution, Muséum National d'Histoire Naturelle, Paris, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Department of Systematics and Evolution, Muséum National d'Histoire Naturelle, Paris</wicri:regionArea></affiliation></author><author><name sortKey="Van Den Bussche, Ronald A" sort="Van Den Bussche, Ronald A" uniqKey="Van Den Bussche R" first="Ronald A." last="Van Den Bussche">Ronald A. Van Den Bussche</name><affiliation wicri:level="1"><nlm:aff id="aff15"><addr-line>Department of Zoology, Oklahoma State University, Stillwater, Oklahoma, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Zoology, Oklahoma State University, Stillwater, Oklahoma</wicri:regionArea></affiliation></author><author><name sortKey="Conroy, Chris" sort="Conroy, Chris" uniqKey="Conroy C" first="Chris" last="Conroy">Chris Conroy</name><affiliation wicri:level="1"><nlm:aff id="aff16"><addr-line>Museum of Vertebrate Zoology, University of California, Berkeley, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Museum of Vertebrate Zoology, University of California, Berkeley, California</wicri:regionArea></affiliation></author><author><name sortKey="Rowe, Kevin" sort="Rowe, Kevin" uniqKey="Rowe K" first="Kevin" last="Rowe">Kevin Rowe</name><affiliation wicri:level="1"><nlm:aff id="aff16"><addr-line>Museum of Vertebrate Zoology, University of California, Berkeley, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Museum of Vertebrate Zoology, University of California, Berkeley, California</wicri:regionArea></affiliation></author><author><name sortKey="Cooper, Alan" sort="Cooper, Alan" uniqKey="Cooper A" first="Alan" last="Cooper">Alan Cooper</name><affiliation wicri:level="1"><nlm:aff id="aff6"><addr-line>Australian Centre for Ancient DNA, University of Adelaide, Adelaide, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Centre for Ancient DNA, University of Adelaide, Adelaide</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">22073158</idno><idno type="pmc">3206810</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3206810</idno><idno type="RBID">PMC:3206810</idno><idno type="doi">10.1371/journal.pone.0026357</idno><date when="2011">2011</date><idno type="wicri:Area/Pmc/Corpus">002C26</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">002C26</idno><idno type="wicri:Area/Pmc/Curation">002A76</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">002A76</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Multiple Geographic Origins of Commensalism and Complex Dispersal History of Black Rats</title><author><name sortKey="Aplin, Ken P" sort="Aplin, Ken P" uniqKey="Aplin K" first="Ken P." last="Aplin">Ken P. Aplin</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Australian National Wildlife Collection, CSIRO Ecosystem Sciences, Canberra, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Australian National Wildlife Collection, CSIRO Ecosystem Sciences, Canberra</wicri:regionArea></affiliation></author><author><name sortKey="Suzuki, Hitoshi" sort="Suzuki, Hitoshi" uniqKey="Suzuki H" first="Hitoshi" last="Suzuki">Hitoshi Suzuki</name><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Graduate School of Environmental Earth Science, Hokkaido University, Sapporo, Japan</addr-line></nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea>Graduate School of Environmental Earth Science, Hokkaido University, Sapporo</wicri:regionArea></affiliation></author><author><name sortKey="Chinen, Alejandro A" sort="Chinen, Alejandro A" uniqKey="Chinen A" first="Alejandro A." last="Chinen">Alejandro A. Chinen</name><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Graduate School of Environmental Earth Science, Hokkaido University, Sapporo, Japan</addr-line></nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea>Graduate School of Environmental Earth Science, Hokkaido University, Sapporo</wicri:regionArea></affiliation></author><author><name sortKey="Chesser, R Terry" sort="Chesser, R Terry" uniqKey="Chesser R" first="R. Terry" last="Chesser">R. Terry Chesser</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Smithsonian Institution, Division of Birds, Washington D.C., United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Smithsonian Institution, Division of Birds, Washington D.C.</wicri:regionArea></affiliation></author><author><name sortKey="Ten Have, Jose" sort="Ten Have, Jose" uniqKey="Ten Have J" first="José" last="Ten Have">José Ten Have</name><affiliation wicri:level="1"><nlm:aff id="aff4"><addr-line>Office of the Gene Technology Regulator, Canberra, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Office of the Gene Technology Regulator, Canberra</wicri:regionArea></affiliation></author><author><name sortKey="Donnellan, Stephen C" sort="Donnellan, Stephen C" uniqKey="Donnellan S" first="Stephen C." last="Donnellan">Stephen C. Donnellan</name><affiliation wicri:level="1"><nlm:aff id="aff5"><addr-line>South Australian Museum, and Australian Centre for Evolutionary Biology and Biodiversity, University of Adelaide, Adelaide, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>South Australian Museum, and Australian Centre for Evolutionary Biology and Biodiversity, University of Adelaide, Adelaide</wicri:regionArea></affiliation></author><author><name sortKey="Austin, Jeremy" sort="Austin, Jeremy" uniqKey="Austin J" first="Jeremy" last="Austin">Jeremy Austin</name><affiliation wicri:level="1"><nlm:aff id="aff6"><addr-line>Australian Centre for Ancient DNA, University of Adelaide, Adelaide, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Centre for Ancient DNA, University of Adelaide, Adelaide</wicri:regionArea></affiliation></author><author><name sortKey="Frost, Angela" sort="Frost, Angela" uniqKey="Frost A" first="Angela" last="Frost">Angela Frost</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Australian National Wildlife Collection, CSIRO Ecosystem Sciences, Canberra, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Australian National Wildlife Collection, CSIRO Ecosystem Sciences, Canberra</wicri:regionArea></affiliation></author><author><name sortKey="Gonzalez, Jean Paul" sort="Gonzalez, Jean Paul" uniqKey="Gonzalez J" first="Jean Paul" last="Gonzalez">Jean Paul Gonzalez</name><affiliation wicri:level="1"><nlm:aff id="aff7"><addr-line>Institut de Recherche pour le Developpement, Research Unit 178, Center for Vectors and Vector Diseases, Faculty of Science, Mahidol University, Nakhonpathom, Thailand</addr-line></nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea>Institut de Recherche pour le Developpement, Research Unit 178, Center for Vectors and Vector Diseases, Faculty of Science, Mahidol University, Nakhonpathom</wicri:regionArea></affiliation></author><author><name sortKey="Herbreteau, Vincent" sort="Herbreteau, Vincent" uniqKey="Herbreteau V" first="Vincent" last="Herbreteau">Vincent Herbreteau</name><affiliation wicri:level="1"><nlm:aff id="aff7"><addr-line>Institut de Recherche pour le Developpement, Research Unit 178, Center for Vectors and Vector Diseases, Faculty of Science, Mahidol University, Nakhonpathom, Thailand</addr-line></nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea>Institut de Recherche pour le Developpement, Research Unit 178, Center for Vectors and Vector Diseases, Faculty of Science, Mahidol University, Nakhonpathom</wicri:regionArea></affiliation></author><author><name sortKey="Catzeflis, Francois" sort="Catzeflis, Francois" uniqKey="Catzeflis F" first="Francois" last="Catzeflis">Francois Catzeflis</name><affiliation wicri:level="1"><nlm:aff id="aff8"><addr-line>Laboratoire de Paléontologie, Phylogénie et Paléobiologie, Institut des Sciences de l'Evolution, Université Montpellier II, Montpellier, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Laboratoire de Paléontologie, Phylogénie et Paléobiologie, Institut des Sciences de l'Evolution, Université Montpellier II, Montpellier</wicri:regionArea></affiliation></author><author><name sortKey="Soubrier, Julien" sort="Soubrier, Julien" uniqKey="Soubrier J" first="Julien" last="Soubrier">Julien Soubrier</name><affiliation wicri:level="1"><nlm:aff id="aff6"><addr-line>Australian Centre for Ancient DNA, University of Adelaide, Adelaide, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Centre for Ancient DNA, University of Adelaide, Adelaide</wicri:regionArea></affiliation></author><author><name sortKey="Fang, Yin Ping" sort="Fang, Yin Ping" uniqKey="Fang Y" first="Yin-Ping" last="Fang">Yin-Ping Fang</name><affiliation wicri:level="1"><nlm:aff id="aff9"><addr-line>Department of Biological Resources, National Chiayi University, Chiayi City, Taiwan</addr-line></nlm:aff><country xml:lang="fr">Taïwan</country><wicri:regionArea>Department of Biological Resources, National Chiayi University, Chiayi City</wicri:regionArea></affiliation></author><author><name sortKey="Robins, Judith" sort="Robins, Judith" uniqKey="Robins J" first="Judith" last="Robins">Judith Robins</name><affiliation wicri:level="1"><nlm:aff id="aff10"><addr-line>Department of Anthropology, University of Auckland, Auckland, New Zealand</addr-line></nlm:aff><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea>Department of Anthropology, University of Auckland, Auckland</wicri:regionArea></affiliation></author><author><name sortKey="Matisoo Smith, Elizabeth" sort="Matisoo Smith, Elizabeth" uniqKey="Matisoo Smith E" first="Elizabeth" last="Matisoo-Smith">Elizabeth Matisoo-Smith</name><affiliation wicri:level="1"><nlm:aff id="aff11"><addr-line>Department of Anatomy & Structural Biology, University of Otago, Dunedin, New Zealand</addr-line></nlm:aff><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea>Department of Anatomy & Structural Biology, University of Otago, Dunedin</wicri:regionArea></affiliation></author><author><name sortKey="Bastos, Amanda D S" sort="Bastos, Amanda D S" uniqKey="Bastos A" first="Amanda D. S." last="Bastos">Amanda D. S. Bastos</name><affiliation wicri:level="1"><nlm:aff id="aff12"><addr-line>Mammal Research Institute, Department of Zoology & Entomology, University of Pretoria, Pretoria, South Africa</addr-line></nlm:aff><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea>Mammal Research Institute, Department of Zoology & Entomology, University of Pretoria, Pretoria</wicri:regionArea></affiliation></author><author><name sortKey="Maryanto, Ibnu" sort="Maryanto, Ibnu" uniqKey="Maryanto I" first="Ibnu" last="Maryanto">Ibnu Maryanto</name><affiliation wicri:level="1"><nlm:aff id="aff13"><addr-line>Indonesian Institute of Sciences (LIPI) & Museum Bogoriense, Cibinong, West Java, Indonesia</addr-line></nlm:aff><country xml:lang="fr">Indonésie</country><wicri:regionArea>Indonesian Institute of Sciences (LIPI) & Museum Bogoriense, Cibinong, West Java</wicri:regionArea></affiliation></author><author><name sortKey="Sinaga, Martua H" sort="Sinaga, Martua H" uniqKey="Sinaga M" first="Martua H." last="Sinaga">Martua H. Sinaga</name><affiliation wicri:level="1"><nlm:aff id="aff13"><addr-line>Indonesian Institute of Sciences (LIPI) & Museum Bogoriense, Cibinong, West Java, Indonesia</addr-line></nlm:aff><country xml:lang="fr">Indonésie</country><wicri:regionArea>Indonesian Institute of Sciences (LIPI) & Museum Bogoriense, Cibinong, West Java</wicri:regionArea></affiliation></author><author><name sortKey="Denys, Christiane" sort="Denys, Christiane" uniqKey="Denys C" first="Christiane" last="Denys">Christiane Denys</name><affiliation wicri:level="1"><nlm:aff id="aff14"><addr-line>Department of Systematics and Evolution, Muséum National d'Histoire Naturelle, Paris, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Department of Systematics and Evolution, Muséum National d'Histoire Naturelle, Paris</wicri:regionArea></affiliation></author><author><name sortKey="Van Den Bussche, Ronald A" sort="Van Den Bussche, Ronald A" uniqKey="Van Den Bussche R" first="Ronald A." last="Van Den Bussche">Ronald A. Van Den Bussche</name><affiliation wicri:level="1"><nlm:aff id="aff15"><addr-line>Department of Zoology, Oklahoma State University, Stillwater, Oklahoma, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Zoology, Oklahoma State University, Stillwater, Oklahoma</wicri:regionArea></affiliation></author><author><name sortKey="Conroy, Chris" sort="Conroy, Chris" uniqKey="Conroy C" first="Chris" last="Conroy">Chris Conroy</name><affiliation wicri:level="1"><nlm:aff id="aff16"><addr-line>Museum of Vertebrate Zoology, University of California, Berkeley, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Museum of Vertebrate Zoology, University of California, Berkeley, California</wicri:regionArea></affiliation></author><author><name sortKey="Rowe, Kevin" sort="Rowe, Kevin" uniqKey="Rowe K" first="Kevin" last="Rowe">Kevin Rowe</name><affiliation wicri:level="1"><nlm:aff id="aff16"><addr-line>Museum of Vertebrate Zoology, University of California, Berkeley, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Museum of Vertebrate Zoology, University of California, Berkeley, California</wicri:regionArea></affiliation></author><author><name sortKey="Cooper, Alan" sort="Cooper, Alan" uniqKey="Cooper A" first="Alan" last="Cooper">Alan Cooper</name><affiliation wicri:level="1"><nlm:aff id="aff6"><addr-line>Australian Centre for Ancient DNA, University of Adelaide, Adelaide, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Centre for Ancient DNA, University of Adelaide, Adelaide</wicri:regionArea></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2011">2011</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The Black Rat (<italic>Rattus rattus</italic>) spread out of Asia to become one of the world's worst agricultural and urban pests, and a reservoir or vector of numerous zoonotic diseases, including the devastating plague. Despite the global scale and inestimable cost of their impacts on both human livelihoods and natural ecosystems, little is known of the global genetic diversity of Black Rats, the timing and directions of their historical dispersals, and the risks associated with contemporary movements. We surveyed mitochondrial DNA of Black Rats collected across their global range as a first step towards obtaining an historical genetic perspective on this socioeconomically important group of rodents. We found a strong phylogeographic pattern with well-differentiated lineages of Black Rats native to South Asia, the Himalayan region, southern Indochina, and northern Indochina to East Asia, and a diversification that probably commenced in the early Middle Pleistocene. We also identified two other currently recognised species of <italic>Rattus</italic> as potential derivatives of a paraphyletic <italic>R. rattus</italic>. Three of the four phylogenetic lineage units within <italic>R. rattus</italic> show clear genetic signatures of major population expansion in prehistoric times, and the distribution of particular haplogroups mirrors archaeologically and historically documented patterns of human dispersal and trade. Commensalism clearly arose multiple times in <italic>R. rattus</italic> and in widely separated geographic regions, and this may account for apparent regionalism in their associated pathogens. Our findings represent an important step towards deeper understanding the complex and influential relationship that has developed between Black Rats and humans, and invite a thorough re-examination of host-pathogen associations among Black Rats.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Barnett, Sa" uniqKey="Barnett S">SA Barnett</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Meerburg, Bg" uniqKey="Meerburg B">BG Meerburg</name></author><author><name sortKey="Singleton, Gr" uniqKey="Singleton G">GR Singleton</name></author><author><name sortKey="Leirs, H" uniqKey="Leirs H">H Leirs</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Goodman, Sm" uniqKey="Goodman S">SM Goodman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Atkinson, Iae" uniqKey="Atkinson I">IAE 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<front><journal-meta><journal-id journal-id-type="nlm-ta">PLoS One</journal-id><journal-id journal-id-type="publisher-id">plos</journal-id><journal-id journal-id-type="pmc">plosone</journal-id><journal-title-group><journal-title>PLoS ONE</journal-title></journal-title-group><issn pub-type="epub">1932-6203</issn><publisher><publisher-name>Public Library of Science</publisher-name><publisher-loc>San Francisco, USA</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">22073158</article-id><article-id pub-id-type="pmc">3206810</article-id><article-id pub-id-type="publisher-id">PONE-D-11-03888</article-id><article-id pub-id-type="doi">10.1371/journal.pone.0026357</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Biology</subject><subj-group><subject>Evolutionary Biology</subject><subj-group><subject>Evolutionary Systematics</subject><subj-group><subject>Taxonomy</subject><subj-group><subject>Animal Taxonomy</subject></subj-group></subj-group></subj-group><subj-group><subject>Population Genetics</subject></subj-group></subj-group><subj-group><subject>Genetics</subject></subj-group><subj-group><subject>Model Organisms</subject><subj-group><subject>Animal Models</subject><subj-group><subject>Rat</subject></subj-group></subj-group></subj-group><subj-group><subject>Zoology</subject><subj-group><subject>Animal Taxonomy</subject><subject>Mammalogy</subject></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Medicine</subject><subj-group><subject>Infectious Diseases</subject><subj-group><subject>Zoonoses</subject></subj-group></subj-group></subj-group></article-categories><title-group><article-title>Multiple Geographic Origins of Commensalism and Complex Dispersal History of Black Rats</article-title><alt-title alt-title-type="running-head">Commensalism and Dispersal History of Black Rats</alt-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Aplin</surname><given-names>Ken P.</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib><contrib contrib-type="author"><name><surname>Suzuki</surname><given-names>Hitoshi</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Chinen</surname><given-names>Alejandro A.</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Chesser</surname><given-names>R. Terry</given-names></name><xref ref-type="aff" rid="aff3"><sup>3</sup></xref></contrib><contrib contrib-type="author"><name><surname>ten Have</surname><given-names>José</given-names></name><xref ref-type="aff" rid="aff4"><sup>4</sup></xref></contrib><contrib contrib-type="author"><name><surname>Donnellan</surname><given-names>Stephen C.</given-names></name><xref ref-type="aff" rid="aff5"><sup>5</sup></xref></contrib><contrib contrib-type="author"><name><surname>Austin</surname><given-names>Jeremy</given-names></name><xref ref-type="aff" rid="aff6"><sup>6</sup></xref></contrib><contrib contrib-type="author"><name><surname>Frost</surname><given-names>Angela</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Gonzalez</surname><given-names>Jean Paul</given-names></name><xref ref-type="aff" rid="aff7"><sup>7</sup></xref></contrib><contrib contrib-type="author"><name><surname>Herbreteau</surname><given-names>Vincent</given-names></name><xref ref-type="aff" rid="aff7"><sup>7</sup></xref></contrib><contrib contrib-type="author"><name><surname>Catzeflis</surname><given-names>Francois</given-names></name><xref ref-type="aff" rid="aff8"><sup>8</sup></xref></contrib><contrib contrib-type="author"><name><surname>Soubrier</surname><given-names>Julien</given-names></name><xref ref-type="aff" rid="aff6"><sup>6</sup></xref></contrib><contrib contrib-type="author"><name><surname>Fang</surname><given-names>Yin-Ping</given-names></name><xref ref-type="aff" rid="aff9"><sup>9</sup></xref></contrib><contrib contrib-type="author"><name><surname>Robins</surname><given-names>Judith</given-names></name><xref ref-type="aff" rid="aff10"><sup>10</sup></xref></contrib><contrib contrib-type="author"><name><surname>Matisoo-Smith</surname><given-names>Elizabeth</given-names></name><xref ref-type="aff" rid="aff11"><sup>11</sup></xref></contrib><contrib contrib-type="author"><name><surname>Bastos</surname><given-names>Amanda D. S.</given-names></name><xref ref-type="aff" rid="aff12"><sup>12</sup></xref></contrib><contrib contrib-type="author"><name><surname>Maryanto</surname><given-names>Ibnu</given-names></name><xref ref-type="aff" rid="aff13"><sup>13</sup></xref></contrib><contrib contrib-type="author"><name><surname>Sinaga</surname><given-names>Martua H.</given-names></name><xref ref-type="aff" rid="aff13"><sup>13</sup></xref></contrib><contrib contrib-type="author"><name><surname>Denys</surname><given-names>Christiane</given-names></name><xref ref-type="aff" rid="aff14"><sup>14</sup></xref></contrib><contrib contrib-type="author"><name><surname>Van Den Bussche</surname><given-names>Ronald A.</given-names></name><xref ref-type="aff" rid="aff15"><sup>15</sup></xref></contrib><contrib contrib-type="author"><name><surname>Conroy</surname><given-names>Chris</given-names></name><xref ref-type="aff" rid="aff16"><sup>16</sup></xref></contrib><contrib contrib-type="author"><name><surname>Rowe</surname><given-names>Kevin</given-names></name><xref ref-type="aff" rid="aff16"><sup>16</sup></xref></contrib><contrib contrib-type="author"><name><surname>Cooper</surname><given-names>Alan</given-names></name><xref ref-type="aff" rid="aff6"><sup>6</sup></xref></contrib></contrib-group><aff id="aff1"><label>1</label><addr-line>Australian National Wildlife Collection, CSIRO Ecosystem Sciences, Canberra, Australia</addr-line></aff><aff id="aff2"><label>2</label><addr-line>Graduate School of Environmental Earth Science, Hokkaido University, Sapporo, Japan</addr-line></aff><aff id="aff3"><label>3</label><addr-line>Smithsonian Institution, Division of Birds, Washington D.C., United States of America</addr-line></aff><aff id="aff4"><label>4</label><addr-line>Office of the Gene Technology Regulator, Canberra, Australia</addr-line></aff><aff id="aff5"><label>5</label><addr-line>South Australian Museum, and Australian Centre for Evolutionary Biology and Biodiversity, University of Adelaide, Adelaide, Australia</addr-line></aff><aff id="aff6"><label>6</label><addr-line>Australian Centre for Ancient DNA, University of Adelaide, Adelaide, Australia</addr-line></aff><aff id="aff7"><label>7</label><addr-line>Institut de Recherche pour le Developpement, Research Unit 178, Center for Vectors and Vector Diseases, Faculty of Science, Mahidol University, Nakhonpathom, Thailand</addr-line></aff><aff id="aff8"><label>8</label><addr-line>Laboratoire de Paléontologie, Phylogénie et Paléobiologie, Institut des Sciences de l'Evolution, Université Montpellier II, Montpellier, France</addr-line></aff><aff id="aff9"><label>9</label><addr-line>Department of Biological Resources, National Chiayi University, Chiayi City, Taiwan</addr-line></aff><aff id="aff10"><label>10</label><addr-line>Department of Anthropology, University of Auckland, Auckland, New Zealand</addr-line></aff><aff id="aff11"><label>11</label><addr-line>Department of Anatomy & Structural Biology, University of Otago, Dunedin, New Zealand</addr-line></aff><aff id="aff12"><label>12</label><addr-line>Mammal Research Institute, Department of Zoology & Entomology, University of Pretoria, Pretoria, South Africa</addr-line></aff><aff id="aff13"><label>13</label><addr-line>Indonesian Institute of Sciences (LIPI) & Museum Bogoriense, Cibinong, West Java, Indonesia</addr-line></aff><aff id="aff14"><label>14</label><addr-line>Department of Systematics and Evolution, Muséum National d'Histoire Naturelle, Paris, France</addr-line></aff><aff id="aff15"><label>15</label><addr-line>Department of Zoology, Oklahoma State University, Stillwater, Oklahoma, United States of America</addr-line></aff><aff id="aff16"><label>16</label><addr-line>Museum of Vertebrate Zoology, University of California, Berkeley, California, United States of America</addr-line></aff><contrib-group><contrib contrib-type="editor"><name><surname>Gilbert</surname><given-names>M. Thomas P.</given-names></name><role>Editor</role><xref ref-type="aff" rid="edit1"></xref></contrib></contrib-group><aff id="edit1">Natural History Museum of Denmark, Denmark</aff><author-notes><corresp id="cor1">* E-mail: <email>aplin.ken@gmail.com</email></corresp><fn fn-type="con"><p>Conceived and designed the experiments: KA HS. Performed the experiments: AC JA RC JtH. Analyzed the data: KA JS RVDB AC SD JA. Contributed reagents/materials/analysis tools: KA AF JPG VH FC Y-PF JR EM-S AB IM MS CD CC KR. Wrote the paper: KA AC JA JS SD.</p></fn></author-notes><pub-date pub-type="collection"><year>2011</year></pub-date><pub-date pub-type="epub"><day>2</day><month>11</month><year>2011</year></pub-date><volume>6</volume><issue>11</issue><elocation-id>e26357</elocation-id><history><date date-type="received"><day>24</day><month>2</month><year>2011</year></date><date date-type="accepted"><day>25</day><month>9</month><year>2011</year></date></history><permissions><copyright-statement>Aplin et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</copyright-statement><copyright-year>2011</copyright-year></permissions><abstract><p>The Black Rat (<italic>Rattus rattus</italic>) spread out of Asia to become one of the world's worst agricultural and urban pests, and a reservoir or vector of numerous zoonotic diseases, including the devastating plague. Despite the global scale and inestimable cost of their impacts on both human livelihoods and natural ecosystems, little is known of the global genetic diversity of Black Rats, the timing and directions of their historical dispersals, and the risks associated with contemporary movements. We surveyed mitochondrial DNA of Black Rats collected across their global range as a first step towards obtaining an historical genetic perspective on this socioeconomically important group of rodents. We found a strong phylogeographic pattern with well-differentiated lineages of Black Rats native to South Asia, the Himalayan region, southern Indochina, and northern Indochina to East Asia, and a diversification that probably commenced in the early Middle Pleistocene. We also identified two other currently recognised species of <italic>Rattus</italic> as potential derivatives of a paraphyletic <italic>R. rattus</italic>. Three of the four phylogenetic lineage units within <italic>R. rattus</italic> show clear genetic signatures of major population expansion in prehistoric times, and the distribution of particular haplogroups mirrors archaeologically and historically documented patterns of human dispersal and trade. Commensalism clearly arose multiple times in <italic>R. rattus</italic> and in widely separated geographic regions, and this may account for apparent regionalism in their associated pathogens. Our findings represent an important step towards deeper understanding the complex and influential relationship that has developed between Black Rats and humans, and invite a thorough re-examination of host-pathogen associations among Black Rats.</p></abstract><counts><page-count count="20"></page-count></counts></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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