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Quantitative trait loci for yield and grain plumpness relative to maturity in three populations of barley (Hordeum vulgare L.) grown in a low rain-fall environment

Identifieur interne : 002830 ( Pmc/Curation ); précédent : 002829; suivant : 002831

Quantitative trait loci for yield and grain plumpness relative to maturity in three populations of barley (Hordeum vulgare L.) grown in a low rain-fall environment

Auteurs : Bulti Tesso Obsa [Australie] ; Jason Eglinton [Australie] ; Stewart Coventry [Australie] ; Timothy March [Australie] ; Maxime Guillaume [France] ; Thanh Phuoc Le [Viêt Nam] ; Matthew Hayden [Australie] ; Peter Langridge [Australie] ; Delphine Fleury [Australie]

Source :

RBID : PMC:5441627

Abstract

Identifying yield and grain plumpness QTL that are independent of developmental variation or phenology is of paramount importance for developing widely adapted and stable varieties through the application of marker assisted selection. The current study was designed to dissect the genetic basis of yield performance and grain plumpness in southern Australia using three doubled haploid (DH) populations developed from crosses between adapted parents that are similar in maturity and overall plant development. Three interconnected genetic populations, Commander x Fleet (CF), Commander x WI4304 (CW), and Fleet x WI4304 (FW) developed from crossing of Australian elite barley genotypes, were used to map QTL controlling yield and grain plumpness. QTL for grain plumpness and yield were analysed using genetic linkage maps made of genotyping-by-sequencing markers and major phenology genes, and field trials at three drought prone environments for two growing seasons. Seventeen QTL were detected for grain plumpness. Eighteen yield QTL explaining from 1.2% to 25.0% of the phenotypic variation were found across populations and environments. Significant QTL x environment interaction was observed for all grain plumpness and yield QTL, except QPlum.FW-4H.1 and QYld.FW-2H.1. Unlike previous yield QTL studies in barley, none of the major developmental genes, including Ppd-H1, Vrn-H1, Vrn-H2 and Vrn-H3, that drive barley adaption significantly affected grain plumpness and yield here. Twenty-two QTL controlled yield or grain plumpness independently of known maturity QTL or genes. Adjustment for maturity effects through co-variance analysis had no major effect on these yield QTL indicating that they control yield per se.


Url:
DOI: 10.1371/journal.pone.0178111
PubMed: 28542571
PubMed Central: 5441627

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PMC:5441627

Le document en format XML

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<title xml:lang="en" level="a" type="main">Quantitative trait loci for yield and grain plumpness relative to maturity in three populations of barley (
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L.) grown in a low rain-fall environment</title>
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<name sortKey="Obsa, Bulti Tesso" sort="Obsa, Bulti Tesso" uniqKey="Obsa B" first="Bulti Tesso" last="Obsa">Bulti Tesso Obsa</name>
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<p>Identifying yield and grain plumpness QTL that are independent of developmental variation or phenology is of paramount importance for developing widely adapted and stable varieties through the application of marker assisted selection. The current study was designed to dissect the genetic basis of yield performance and grain plumpness in southern Australia using three doubled haploid (DH) populations developed from crosses between adapted parents that are similar in maturity and overall plant development. Three interconnected genetic populations, Commander x Fleet (CF), Commander x WI4304 (CW), and Fleet x WI4304 (FW) developed from crossing of Australian elite barley genotypes, were used to map QTL controlling yield and grain plumpness. QTL for grain plumpness and yield were analysed using genetic linkage maps made of genotyping-by-sequencing markers and major phenology genes, and field trials at three drought prone environments for two growing seasons. Seventeen QTL were detected for grain plumpness. Eighteen yield QTL explaining from 1.2% to 25.0% of the phenotypic variation were found across populations and environments. Significant QTL x environment interaction was observed for all grain plumpness and yield QTL, except
<italic>QPlum</italic>
.
<italic>FW-4H</italic>
.
<italic>1</italic>
and
<italic>QYld</italic>
.
<italic>FW-2H</italic>
.
<italic>1</italic>
. Unlike previous yield QTL studies in barley, none of the major developmental genes, including
<italic>Ppd-H1</italic>
,
<italic>Vrn-H1</italic>
,
<italic>Vrn-H2</italic>
and
<italic>Vrn-H3</italic>
, that drive barley adaption significantly affected grain plumpness and yield here. Twenty-two QTL controlled yield or grain plumpness independently of known maturity QTL or genes. Adjustment for maturity effects through co-variance analysis had no major effect on these yield QTL indicating that they control yield
<italic>per se</italic>
.</p>
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<journal-id journal-id-type="iso-abbrev">PLoS ONE</journal-id>
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<article-id pub-id-type="pmid">28542571</article-id>
<article-id pub-id-type="pmc">5441627</article-id>
<article-id pub-id-type="doi">10.1371/journal.pone.0178111</article-id>
<article-id pub-id-type="publisher-id">PONE-D-17-01296</article-id>
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<subject>Gene Mapping</subject>
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<subject>Population Genetics</subject>
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<subject>Genetic Loci</subject>
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<title-group>
<article-title>Quantitative trait loci for yield and grain plumpness relative to maturity in three populations of barley (
<italic>Hordeum vulgare</italic>
L.) grown in a low rain-fall environment</article-title>
<alt-title alt-title-type="running-head">QTL for yield and grain plumpness in three populations of barley grown in a low rain-fall environment</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Obsa</surname>
<given-names>Bulti Tesso</given-names>
</name>
<xref ref-type="aff" rid="aff001">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Eglinton</surname>
<given-names>Jason</given-names>
</name>
<xref ref-type="aff" rid="aff002">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Coventry</surname>
<given-names>Stewart</given-names>
</name>
<xref ref-type="aff" rid="aff002">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>March</surname>
<given-names>Timothy</given-names>
</name>
<xref ref-type="aff" rid="aff002">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Guillaume</surname>
<given-names>Maxime</given-names>
</name>
<xref ref-type="aff" rid="aff003">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Le</surname>
<given-names>Thanh Phuoc</given-names>
</name>
<xref ref-type="aff" rid="aff004">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Hayden</surname>
<given-names>Matthew</given-names>
</name>
<xref ref-type="aff" rid="aff005">
<sup>5</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Langridge</surname>
<given-names>Peter</given-names>
</name>
<xref ref-type="aff" rid="aff001">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff002">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<contrib-id authenticated="true" contrib-id-type="orcid">http://orcid.org/0000-0002-7077-4103</contrib-id>
<name>
<surname>Fleury</surname>
<given-names>Delphine</given-names>
</name>
<xref ref-type="aff" rid="aff001">
<sup>1</sup>
</xref>
<xref ref-type="corresp" rid="cor001">*</xref>
</contrib>
</contrib-group>
<aff id="aff001">
<label>1</label>
<addr-line>Australian Centre for Plant Functional Genomics, School of Agriculture, Food and Wine, Waite Research Institute, The University of Adelaide, Glen Osmond, South Australia, Australia</addr-line>
</aff>
<aff id="aff002">
<label>2</label>
<addr-line>School of Agriculture, Food and Wine, Waite Research Institute, The University of Adelaide, Glen Osmond, South Australia, Australia</addr-line>
</aff>
<aff id="aff003">
<label>3</label>
<addr-line>Montpellier SupAgro, Montpellier, France</addr-line>
</aff>
<aff id="aff004">
<label>4</label>
<addr-line>Department of Plant Protection, College of Agriculture & Applied Biology, Can Tho University, Can Tho, Vietnam</addr-line>
</aff>
<aff id="aff005">
<label>5</label>
<addr-line>Department of Economic Development, Jobs, Transport and Resources, Agribio, La Trobe University, Bundoora, Victoria, Australia</addr-line>
</aff>
<contrib-group>
<contrib contrib-type="editor">
<name>
<surname>Raman</surname>
<given-names>Harsh</given-names>
</name>
<role>Editor</role>
<xref ref-type="aff" rid="edit1"></xref>
</contrib>
</contrib-group>
<aff id="edit1">
<addr-line>New South Wales Department of Primary Industries, AUSTRALIA</addr-line>
</aff>
<author-notes>
<fn fn-type="COI-statement" id="coi001">
<p>
<bold>Competing Interests: </bold>
The authors have declared that no competing interests exist.</p>
</fn>
<fn fn-type="con">
<p>
<list list-type="simple">
<list-item>
<p>
<bold>Conceptualization:</bold>
DF JE PL.</p>
</list-item>
<list-item>
<p>
<bold>Data curation:</bold>
BTO DF.</p>
</list-item>
<list-item>
<p>
<bold>Formal analysis:</bold>
BTO TM SC MH.</p>
</list-item>
<list-item>
<p>
<bold>Funding acquisition:</bold>
JE PL.</p>
</list-item>
<list-item>
<p>
<bold>Investigation:</bold>
BTO ST MG TPL TM MH.</p>
</list-item>
<list-item>
<p>
<bold>Project administration:</bold>
DF JE.</p>
</list-item>
<list-item>
<p>
<bold>Resources:</bold>
SC MH.</p>
</list-item>
<list-item>
<p>
<bold>Supervision:</bold>
DF.</p>
</list-item>
<list-item>
<p>
<bold>Validation:</bold>
DF.</p>
</list-item>
<list-item>
<p>
<bold>Visualization:</bold>
BTO DF.</p>
</list-item>
<list-item>
<p>
<bold>Writing – original draft:</bold>
BTO.</p>
</list-item>
<list-item>
<p>
<bold>Writing – review & editing:</bold>
DF PL JE TM.</p>
</list-item>
</list>
</p>
</fn>
<corresp id="cor001">* E-mail:
<email>delphine.fleury@adelaide.edu.au</email>
</corresp>
</author-notes>
<pub-date pub-type="epub">
<day>23</day>
<month>5</month>
<year>2017</year>
</pub-date>
<pub-date pub-type="collection">
<year>2017</year>
</pub-date>
<volume>12</volume>
<issue>5</issue>
<elocation-id>e0178111</elocation-id>
<history>
<date date-type="received">
<day>11</day>
<month>1</month>
<year>2017</year>
</date>
<date date-type="accepted">
<day>6</day>
<month>5</month>
<year>2017</year>
</date>
</history>
<permissions>
<copyright-statement>© 2017 Obsa et al</copyright-statement>
<copyright-year>2017</copyright-year>
<copyright-holder>Obsa et al</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<license-p>This is an open access article distributed under the terms of the
<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution License</ext-link>
, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p>
</license>
</permissions>
<self-uri content-type="pdf" xlink:href="pone.0178111.pdf"></self-uri>
<abstract>
<p>Identifying yield and grain plumpness QTL that are independent of developmental variation or phenology is of paramount importance for developing widely adapted and stable varieties through the application of marker assisted selection. The current study was designed to dissect the genetic basis of yield performance and grain plumpness in southern Australia using three doubled haploid (DH) populations developed from crosses between adapted parents that are similar in maturity and overall plant development. Three interconnected genetic populations, Commander x Fleet (CF), Commander x WI4304 (CW), and Fleet x WI4304 (FW) developed from crossing of Australian elite barley genotypes, were used to map QTL controlling yield and grain plumpness. QTL for grain plumpness and yield were analysed using genetic linkage maps made of genotyping-by-sequencing markers and major phenology genes, and field trials at three drought prone environments for two growing seasons. Seventeen QTL were detected for grain plumpness. Eighteen yield QTL explaining from 1.2% to 25.0% of the phenotypic variation were found across populations and environments. Significant QTL x environment interaction was observed for all grain plumpness and yield QTL, except
<italic>QPlum</italic>
.
<italic>FW-4H</italic>
.
<italic>1</italic>
and
<italic>QYld</italic>
.
<italic>FW-2H</italic>
.
<italic>1</italic>
. Unlike previous yield QTL studies in barley, none of the major developmental genes, including
<italic>Ppd-H1</italic>
,
<italic>Vrn-H1</italic>
,
<italic>Vrn-H2</italic>
and
<italic>Vrn-H3</italic>
, that drive barley adaption significantly affected grain plumpness and yield here. Twenty-two QTL controlled yield or grain plumpness independently of known maturity QTL or genes. Adjustment for maturity effects through co-variance analysis had no major effect on these yield QTL indicating that they control yield
<italic>per se</italic>
.</p>
</abstract>
<funding-group>
<award-group id="award001">
<funding-source>
<institution-wrap>
<institution-id institution-id-type="funder-id">http://dx.doi.org/10.13039/100008584</institution-id>
<institution>Grain Research and Development Corporation</institution>
</institution-wrap>
</funding-source>
<principal-award-recipient>
<name>
<surname>Obsa</surname>
<given-names>Bulti Tesso</given-names>
</name>
</principal-award-recipient>
</award-group>
<award-group id="award002">
<funding-source>
<institution-wrap>
<institution-id institution-id-type="funder-id">http://dx.doi.org/10.13039/501100000923</institution-id>
<institution>Australian Research Council</institution>
</institution-wrap>
</funding-source>
<principal-award-recipient>
<name>
<surname>Obsa</surname>
<given-names>Bulti Tesso</given-names>
</name>
</principal-award-recipient>
</award-group>
<award-group id="award003">
<funding-source>
<institution>South Australia Grain Industry Trust</institution>
</funding-source>
<principal-award-recipient>
<name>
<surname>Obsa</surname>
<given-names>Bulti Tesso</given-names>
</name>
</principal-award-recipient>
</award-group>
<award-group id="award004">
<funding-source>
<institution-wrap>
<institution-id institution-id-type="funder-id">http://dx.doi.org/10.13039/501100001786</institution-id>
<institution>University of Adelaide</institution>
</institution-wrap>
</funding-source>
<principal-award-recipient>
<name>
<surname>Obsa</surname>
<given-names>Bulti Tesso</given-names>
</name>
</principal-award-recipient>
</award-group>
<award-group id="award005">
<funding-source>
<institution-wrap>
<institution-id institution-id-type="funder-id">http://dx.doi.org/10.13039/501100002041</institution-id>
<institution>Department of Further Education, Employment, Science and Technology, Government of South Australia</institution>
</institution-wrap>
</funding-source>
<principal-award-recipient>
<name>
<surname>Obsa</surname>
<given-names>Bulti Tesso</given-names>
</name>
</principal-award-recipient>
</award-group>
<funding-statement>This work is partially funded by the South Australia Grain Industry Trust Fund (UA 1202), and by Australian Research Council, Grains Research and Development Corporation, the South Australian Government, the Department of Further Education, Employment, Science and Technology, and The University of Adelaide through the Australian Centre for Plant Functional Genomics. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.</funding-statement>
</funding-group>
<counts>
<fig-count count="1"></fig-count>
<table-count count="3"></table-count>
<page-count count="17"></page-count>
</counts>
<custom-meta-group>
<custom-meta id="data-availability">
<meta-name>Data Availability</meta-name>
<meta-value>All relevant data are within the paper and its Supporting Information files.</meta-value>
</custom-meta>
</custom-meta-group>
</article-meta>
<notes>
<title>Data Availability</title>
<p>All relevant data are within the paper and its Supporting Information files.</p>
</notes>
</front>
</pmc>
</record>

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