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Chloroplast ribonucleoprotein CP31A is required for editing and stability of specific chloroplast mRNAs

Identifieur interne : 001983 ( Pmc/Curation ); précédent : 001982; suivant : 001984

Chloroplast ribonucleoprotein CP31A is required for editing and stability of specific chloroplast mRNAs

Auteurs : Michael Tillich [Allemagne] ; Simone L. Hardel [Allemagne] ; Christiane Kupsch [Allemagne] ; Ute Armbruster ; Etienne Delannoy [Australie] ; José M. Gualberto [France] ; Pascal Lehwark [Allemagne] ; Dario Leister ; Ian D. Small [Australie] ; Christian Schmitz-Linneweber [Allemagne]

Source :

RBID : PMC:2667074

Abstract

Chloroplast ribonucleoproteins (cpRNPs) are nuclear-encoded, highly abundant, and light-regulated RNA binding proteins. They have been shown to be involved in chloroplast RNA processing and stabilization in vitro and are phylogenetically related to the well-described heterogeneous nuclear ribonucleoproteins (hnRNPs). cpRNPs have been found associated with mRNAs present in chloroplasts and have been regarded as nonspecific stabilizers of chloroplast transcripts. Here, we demonstrate that null mutants of the cpRNP family member CP31A exhibit highly specific and diverse defects in chloroplast RNA metabolism. First, analysis of cp31a and cp31a/cp31b double mutants uncovers that these 2 paralogous genes participate nonredundantly in a combinatorial fashion in processing a subset of chloroplast editing sites in vivo. Second, a genome-wide analysis of chloroplast transcript accumulation in cp31a mutants detected a virtually complete loss of the chloroplast ndhF mRNA and lesser reductions for specific other mRNAs. Fluorescence analyses show that the activity of the NADH dehydrogenase complex, which also includes the NdhF subunit, is defective in cp31a mutants. This indicates that cpRNPs are important in vivo for calibrating the expression levels of specific chloroplast mRNAs and impact chloroplast physiology. Taken together, the specificity and combinatorial aspects of cpRNP functions uncovered suggest that these chloroplast proteins are functional equivalents of nucleocytosolic hnRNPs.


Url:
DOI: 10.1073/pnas.0808529106
PubMed: 19297624
PubMed Central: 2667074

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Ute Armbruster
<affiliation>
<nlm:aff id="aff2">Lehrstuhl für Botanik, Department Biologie I;</nlm:aff>
<wicri:noCountry code="subfield">Department Biologie I</wicri:noCountry>
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Dario Leister
<affiliation>
<nlm:aff id="aff2">Lehrstuhl für Botanik, Department Biologie I;</nlm:aff>
<wicri:noCountry code="subfield">Department Biologie I</wicri:noCountry>
</affiliation>

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<wicri:noCountry code="subfield">Department Biologie I</wicri:noCountry>
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<name sortKey="Small, Ian D" sort="Small, Ian D" uniqKey="Small I" first="Ian D." last="Small">Ian D. Small</name>
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<name sortKey="Schmitz Linneweber, Christian" sort="Schmitz Linneweber, Christian" uniqKey="Schmitz Linneweber C" first="Christian" last="Schmitz-Linneweber">Christian Schmitz-Linneweber</name>
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<title level="j">Proceedings of the National Academy of Sciences of the United States of America</title>
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<p>Chloroplast ribonucleoproteins (cpRNPs) are nuclear-encoded, highly abundant, and light-regulated RNA binding proteins. They have been shown to be involved in chloroplast RNA processing and stabilization in vitro and are phylogenetically related to the well-described heterogeneous nuclear ribonucleoproteins (hnRNPs). cpRNPs have been found associated with mRNAs present in chloroplasts and have been regarded as nonspecific stabilizers of chloroplast transcripts. Here, we demonstrate that null mutants of the cpRNP family member
<italic>CP31A</italic>
exhibit highly specific and diverse defects in chloroplast RNA metabolism. First, analysis of
<italic>cp31a</italic>
and
<italic>cp31a</italic>
/
<italic>cp31b</italic>
double mutants uncovers that these 2 paralogous genes participate nonredundantly in a combinatorial fashion in processing a subset of chloroplast editing sites in vivo. Second, a genome-wide analysis of chloroplast transcript accumulation in
<italic>cp31a</italic>
mutants detected a virtually complete loss of the chloroplast
<italic>ndhF</italic>
mRNA and lesser reductions for specific other mRNAs. Fluorescence analyses show that the activity of the NADH dehydrogenase complex, which also includes the NdhF subunit, is defective in
<italic>cp31a</italic>
mutants. This indicates that cpRNPs are important in vivo for calibrating the expression levels of specific chloroplast mRNAs and impact chloroplast physiology. Taken together, the specificity and combinatorial aspects of cpRNP functions uncovered suggest that these chloroplast proteins are functional equivalents of nucleocytosolic hnRNPs.</p>
</div>
</front>
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<pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<front>
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<journal-id journal-id-type="hwp">pnas</journal-id>
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<article-id pub-id-type="doi">10.1073/pnas.0808529106</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Biological Sciences</subject>
<subj-group>
<subject>Plant Biology</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Chloroplast ribonucleoprotein CP31A is required for editing and stability of specific chloroplast mRNAs</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Tillich</surname>
<given-names>Michael</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>a</sup>
</xref>
<xref ref-type="author-notes" rid="FN1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Hardel</surname>
<given-names>Simone L.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>a</sup>
</xref>
<xref ref-type="author-notes" rid="FN1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Kupsch</surname>
<given-names>Christiane</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>a</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Armbruster</surname>
<given-names>Ute</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>b</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Delannoy</surname>
<given-names>Etienne</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>c</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Gualberto</surname>
<given-names>José M.</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>d</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Lehwark</surname>
<given-names>Pascal</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>a</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Leister</surname>
<given-names>Dario</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>b</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Small</surname>
<given-names>Ian D.</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>c</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Schmitz-Linneweber</surname>
<given-names>Christian</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>a</sup>
</xref>
<xref ref-type="corresp" rid="cor1">
<sup>2</sup>
</xref>
</contrib>
<aff id="aff1">
<sup>a</sup>
Institute of Biology, Humboldt-University of Berlin, 10115 Berlin, Germany;</aff>
<aff id="aff2">
<sup>b</sup>
Lehrstuhl für Botanik, Department Biologie I;</aff>
<aff id="aff3">Ludwig-Maximilians-Universität München, 82152 Planegg-Martinsried, Germany;</aff>
<aff id="aff4">
<sup>c</sup>
Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Perth, Australia; and</aff>
<aff id="aff5">
<sup>d</sup>
Institut de Biologie Moléculaire des Plantes du Centre National de la Recherche Scientifique, Université de Strasbourg, 12 rue du Général Zimmer, 67084 Strasbourg Cedex, France</aff>
</contrib-group>
<author-notes>
<corresp id="cor1">
<sup>2</sup>
To whom correspondence should be addressed. E-mail:
<email>christian.schmitz-linneweber@rz.hu-berlin.de</email>
</corresp>
<fn fn-type="edited-by">
<p>Edited by Gadi Schuster, Technion-Israel Institute of Technology, Haifa, Israel, and accepted by the Editorial Board January 16, 2009</p>
</fn>
<fn fn-type="con">
<p>Author contributions: M.T. and C.S.-L. designed research; M.T., S.L.H., C.K., U.A., E.D., J.M.G., and P.L. performed research; M.T., S.L.H., C.K., U.A., E.D., J.M.G., P.L., D.L., I.D.S., and C.S.-L. analyzed data; and C.S.-L. wrote the paper.</p>
</fn>
<fn id="FN1" fn-type="equal">
<p>
<sup>1</sup>
M.T. and S.L.H. contributed equally to this work.</p>
</fn>
</author-notes>
<pub-date pub-type="ppub">
<day>7</day>
<month>4</month>
<year>2009</year>
</pub-date>
<pub-date pub-type="epub">
<day>18</day>
<month>3</month>
<year>2009</year>
</pub-date>
<volume>106</volume>
<issue>14</issue>
<fpage>6002</fpage>
<lpage>6007</lpage>
<history>
<date date-type="received">
<day>29</day>
<month>8</month>
<year>2008</year>
</date>
</history>
<permissions></permissions>
<self-uri xlink:title="pdf" xlink:type="simple" xlink:href="zpq01409006002.pdf"></self-uri>
<abstract>
<p>Chloroplast ribonucleoproteins (cpRNPs) are nuclear-encoded, highly abundant, and light-regulated RNA binding proteins. They have been shown to be involved in chloroplast RNA processing and stabilization in vitro and are phylogenetically related to the well-described heterogeneous nuclear ribonucleoproteins (hnRNPs). cpRNPs have been found associated with mRNAs present in chloroplasts and have been regarded as nonspecific stabilizers of chloroplast transcripts. Here, we demonstrate that null mutants of the cpRNP family member
<italic>CP31A</italic>
exhibit highly specific and diverse defects in chloroplast RNA metabolism. First, analysis of
<italic>cp31a</italic>
and
<italic>cp31a</italic>
/
<italic>cp31b</italic>
double mutants uncovers that these 2 paralogous genes participate nonredundantly in a combinatorial fashion in processing a subset of chloroplast editing sites in vivo. Second, a genome-wide analysis of chloroplast transcript accumulation in
<italic>cp31a</italic>
mutants detected a virtually complete loss of the chloroplast
<italic>ndhF</italic>
mRNA and lesser reductions for specific other mRNAs. Fluorescence analyses show that the activity of the NADH dehydrogenase complex, which also includes the NdhF subunit, is defective in
<italic>cp31a</italic>
mutants. This indicates that cpRNPs are important in vivo for calibrating the expression levels of specific chloroplast mRNAs and impact chloroplast physiology. Taken together, the specificity and combinatorial aspects of cpRNP functions uncovered suggest that these chloroplast proteins are functional equivalents of nucleocytosolic hnRNPs.</p>
</abstract>
<kwd-group>
<kwd>
<italic>Arabidopsis</italic>
</kwd>
<kwd>RNA binding</kwd>
<kwd>RNA editing</kwd>
</kwd-group>
</article-meta>
</front>
</pmc>
</record>

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HfdIndexSelect -h $EXPLOR_AREA/Data/Pmc/Curation/RBID.i   -Sk "pubmed:19297624" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Pmc/Curation/biblio.hfd   \
       | NlmPubMed2Wicri -a AustralieFrV1 

Wicri

This area was generated with Dilib version V0.6.33.
Data generation: Tue Dec 5 10:43:12 2017. Site generation: Tue Mar 5 14:07:20 2024