Arabidopsis tRNA Adenosine Deaminase Arginine Edits the Wobble Nucleotide of Chloroplast tRNAArg(ACG) and Is Essential for Efficient Chloroplast Translation[W]
Identifieur interne : 000F07 ( Pmc/Curation ); précédent : 000F06; suivant : 000F08Arabidopsis tRNA Adenosine Deaminase Arginine Edits the Wobble Nucleotide of Chloroplast tRNAArg(ACG) and Is Essential for Efficient Chloroplast Translation[W]
Auteurs : Etienne Delannoy [Australie] ; Monique Le Ret [France] ; Emmanuelle Faivre-Nitschke [France] ; Gonzalo M. Estavillo [Australie] ; Marc Bergdoll [France] ; Nicolas L. Taylor [Australie] ; Barry J. Pogson [Australie] ; Ian Small [Australie] ; Patrice Imbault [France] ; José M. Gualberto [Australie, France]Source :
- The Plant Cell [ 1040-4651 ] ; 2009.
Abstract
RNA editing changes the coding/decoding information relayed by transcripts via nucleotide insertion, deletion, or conversion. Editing of tRNA anticodons by deamination of adenine to inosine is used both by eukaryotes and prokaryotes to expand the decoding capacity of individual tRNAs. This limits the number of tRNA species required for codon-anticodon recognition. We have identified the
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DOI: 10.1105/tpc.109.066654
PubMed: 19602623
PubMed Central: 2729595
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Gualberto</name><affiliation wicri:level="1"><nlm:aff id="aff1">Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, 6008 WA, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, 6008 WA</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2">Institut de Biologie Moléculaire des Plantes du Centre National de la Recherche Scientifique, Université de Strasbourg, 67084 Strasbourg Cedex, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut de Biologie Moléculaire des Plantes du Centre National de la Recherche Scientifique, Université de Strasbourg, 67084 Strasbourg Cedex</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">19602623</idno><idno type="pmc">2729595</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2729595</idno><idno type="RBID">PMC:2729595</idno><idno type="doi">10.1105/tpc.109.066654</idno><date when="2009">2009</date><idno type="wicri:Area/Pmc/Corpus">001046</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">001046</idno><idno type="wicri:Area/Pmc/Curation">000F07</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000F07</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main"><italic>Arabidopsis</italic> tRNA Adenosine Deaminase Arginine Edits the Wobble Nucleotide of Chloroplast tRNA<sup>Arg</sup>(ACG) and Is Essential for Efficient Chloroplast Translation<xref ref-type="fn" rid="fn1">[W]</xref></title><author><name sortKey="Delannoy, Etienne" sort="Delannoy, Etienne" uniqKey="Delannoy E" first="Etienne" last="Delannoy">Etienne Delannoy</name><affiliation wicri:level="1"><nlm:aff id="aff1">Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, 6008 WA, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, 6008 WA</wicri:regionArea></affiliation></author><author><name sortKey="Le Ret, Monique" sort="Le Ret, Monique" uniqKey="Le Ret M" first="Monique" last="Le Ret">Monique Le Ret</name><affiliation wicri:level="1"><nlm:aff id="aff2">Institut de Biologie Moléculaire des Plantes du Centre National de la Recherche Scientifique, Université de Strasbourg, 67084 Strasbourg Cedex, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut de Biologie Moléculaire des Plantes du Centre National de la Recherche Scientifique, Université de Strasbourg, 67084 Strasbourg Cedex</wicri:regionArea></affiliation></author><author><name sortKey="Faivre Nitschke, Emmanuelle" sort="Faivre Nitschke, Emmanuelle" uniqKey="Faivre Nitschke E" first="Emmanuelle" last="Faivre-Nitschke">Emmanuelle Faivre-Nitschke</name><affiliation wicri:level="1"><nlm:aff id="aff2">Institut de Biologie Moléculaire des Plantes du Centre National de la Recherche Scientifique, Université de Strasbourg, 67084 Strasbourg Cedex, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut de Biologie Moléculaire des Plantes du Centre National de la Recherche Scientifique, Université de Strasbourg, 67084 Strasbourg Cedex</wicri:regionArea></affiliation></author><author><name sortKey="Estavillo, Gonzalo M" sort="Estavillo, Gonzalo M" uniqKey="Estavillo G" first="Gonzalo M." last="Estavillo">Gonzalo M. Estavillo</name><affiliation wicri:level="1"><nlm:aff id="aff3">Australian Research Council Centre of Excellence in Plant Energy Biology, School of Biology, Australian National University, Canberra, 0200 ACT, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Research Council Centre of Excellence in Plant Energy Biology, School of Biology, Australian National University, Canberra, 0200 ACT</wicri:regionArea></affiliation></author><author><name sortKey="Bergdoll, Marc" sort="Bergdoll, Marc" uniqKey="Bergdoll M" first="Marc" last="Bergdoll">Marc Bergdoll</name><affiliation wicri:level="1"><nlm:aff id="aff2">Institut de Biologie Moléculaire des Plantes du Centre National de la Recherche Scientifique, Université de Strasbourg, 67084 Strasbourg Cedex, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut de Biologie Moléculaire des Plantes du Centre National de la Recherche Scientifique, Université de Strasbourg, 67084 Strasbourg Cedex</wicri:regionArea></affiliation></author><author><name sortKey="Taylor, Nicolas L" sort="Taylor, Nicolas L" uniqKey="Taylor N" first="Nicolas L." last="Taylor">Nicolas L. Taylor</name><affiliation wicri:level="1"><nlm:aff id="aff1">Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, 6008 WA, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, 6008 WA</wicri:regionArea></affiliation></author><author><name sortKey="Pogson, Barry J" sort="Pogson, Barry J" uniqKey="Pogson B" first="Barry J." last="Pogson">Barry J. Pogson</name><affiliation wicri:level="1"><nlm:aff id="aff3">Australian Research Council Centre of Excellence in Plant Energy Biology, School of Biology, Australian National University, Canberra, 0200 ACT, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Research Council Centre of Excellence in Plant Energy Biology, School of Biology, Australian National University, Canberra, 0200 ACT</wicri:regionArea></affiliation></author><author><name sortKey="Small, Ian" sort="Small, Ian" uniqKey="Small I" first="Ian" last="Small">Ian Small</name><affiliation wicri:level="1"><nlm:aff id="aff1">Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, 6008 WA, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, 6008 WA</wicri:regionArea></affiliation></author><author><name sortKey="Imbault, Patrice" sort="Imbault, Patrice" uniqKey="Imbault P" first="Patrice" last="Imbault">Patrice Imbault</name><affiliation wicri:level="1"><nlm:aff id="aff2">Institut de Biologie Moléculaire des Plantes du Centre National de la Recherche Scientifique, Université de Strasbourg, 67084 Strasbourg Cedex, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut de Biologie Moléculaire des Plantes du Centre National de la Recherche Scientifique, Université de Strasbourg, 67084 Strasbourg Cedex</wicri:regionArea></affiliation></author><author><name sortKey="Gualberto, Jose M" sort="Gualberto, Jose M" uniqKey="Gualberto J" first="José M." last="Gualberto">José M. Gualberto</name><affiliation wicri:level="1"><nlm:aff id="aff1">Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, 6008 WA, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, 6008 WA</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2">Institut de Biologie Moléculaire des Plantes du Centre National de la Recherche Scientifique, Université de Strasbourg, 67084 Strasbourg Cedex, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut de Biologie Moléculaire des Plantes du Centre National de la Recherche Scientifique, Université de Strasbourg, 67084 Strasbourg Cedex</wicri:regionArea></affiliation></author></analytic><series><title level="j">The Plant Cell</title><idno type="ISSN">1040-4651</idno><idno type="eISSN">1532-298X</idno><imprint><date when="2009">2009</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>RNA editing changes the coding/decoding information relayed by transcripts via nucleotide insertion, deletion, or conversion. Editing of tRNA anticodons by deamination of adenine to inosine is used both by eukaryotes and prokaryotes to expand the decoding capacity of individual tRNAs. This limits the number of tRNA species required for codon-anticodon recognition. We have identified the <italic>Arabidopsis thaliana</italic> gene that codes for tRNA adenosine deaminase arginine (TADA), a chloroplast tRNA editing protein specifically required for deamination of chloroplast (cp)-tRNA<sup>Arg</sup>(ACG) to cp-tRNA<sup>Arg</sup>(ICG). Land plant TADAs have a C-terminal domain similar in sequence and predicted structure to prokaryotic tRNA deaminases and also have very long N-terminal extensions of unknown origin and function. Biochemical and mutant complementation studies showed that the C-terminal domain is sufficient for cognate tRNA deamination both in vitro and in planta. Disruption of <italic>TADA</italic> has profound effects on chloroplast translation efficiency, leading to reduced yields of chloroplast-encoded proteins and impaired photosynthetic function. By contrast, chloroplast transcripts accumulate to levels significantly above those of wild-type plants. Nevertheless, absence of cp-tRNA<sup>Arg</sup>(ICG) is compatible with plant survival, implying that two out of three CGN codon recognition occurs in chloroplasts, though this mechanism is less efficient than wobble pairing.</p></div></front></TEI><pmc article-type="research-article"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Plant Cell</journal-id><journal-id journal-id-type="publisher-id">plantcell</journal-id><journal-title>The Plant Cell</journal-title><issn pub-type="ppub">1040-4651</issn><issn pub-type="epub">1532-298X</issn><publisher><publisher-name>American Society of Plant Biologists</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">19602623</article-id><article-id pub-id-type="pmc">2729595</article-id><article-id pub-id-type="publisher-id">066654</article-id><article-id pub-id-type="doi">10.1105/tpc.109.066654</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Articles</subject></subj-group></article-categories><title-group><article-title><italic>Arabidopsis</italic> tRNA Adenosine Deaminase Arginine Edits the Wobble Nucleotide of Chloroplast tRNA<sup>Arg</sup>(ACG) and Is Essential for Efficient Chloroplast Translation<xref ref-type="fn" rid="fn1">[W]</xref></article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Delannoy</surname><given-names>Etienne</given-names></name><xref ref-type="aff" rid="aff1">a</xref></contrib><contrib contrib-type="author"><name><surname>Le Ret</surname><given-names>Monique</given-names></name><xref ref-type="aff" rid="aff2">b</xref></contrib><contrib contrib-type="author"><name><surname>Faivre-Nitschke</surname><given-names>Emmanuelle</given-names></name><xref ref-type="aff" rid="aff2">b</xref></contrib><contrib contrib-type="author"><name><surname>Estavillo</surname><given-names>Gonzalo M.</given-names></name><xref ref-type="aff" rid="aff3">c</xref></contrib><contrib contrib-type="author"><name><surname>Bergdoll</surname><given-names>Marc</given-names></name><xref ref-type="aff" rid="aff2">b</xref></contrib><contrib contrib-type="author"><name><surname>Taylor</surname><given-names>Nicolas L.</given-names></name><xref ref-type="aff" rid="aff1">a</xref></contrib><contrib contrib-type="author"><name><surname>Pogson</surname><given-names>Barry J.</given-names></name><xref ref-type="aff" rid="aff3">c</xref></contrib><contrib contrib-type="author"><name><surname>Small</surname><given-names>Ian</given-names></name><xref ref-type="aff" rid="aff1">a</xref></contrib><contrib contrib-type="author"><name><surname>Imbault</surname><given-names>Patrice</given-names></name><xref ref-type="aff" rid="aff2">b</xref></contrib><contrib contrib-type="author"><name><surname>Gualberto</surname><given-names>José M.</given-names></name><xref ref-type="aff" rid="aff1">a</xref><xref ref-type="aff" rid="aff2">b</xref><xref ref-type="corresp" rid="cor1">1</xref></contrib></contrib-group><aff id="aff1"><label>a</label>Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, 6008 WA, Australia</aff><aff id="aff2"><label>b</label>Institut de Biologie Moléculaire des Plantes du Centre National de la Recherche Scientifique, Université de Strasbourg, 67084 Strasbourg Cedex, France</aff><aff id="aff3"><label>c</label>Australian Research Council Centre of Excellence in Plant Energy Biology, School of Biology, Australian National University, Canberra, 0200 ACT, Australia</aff><author-notes><fn id="cor1"><label>1</label><p>Address correspondence to <email>jose.gualberto@ibmp-ulp.u-strasbg.fr</email>.</p></fn></author-notes><pub-date pub-type="ppub"><month>7</month><year>2009</year></pub-date><volume>21</volume><issue>7</issue><fpage>2058</fpage><lpage>2071</lpage><history><date date-type="received"><day>28</day><month>2</month><year>2009</year></date><date date-type="rev-recd"><day>12</day><month>6</month><year>2009</year></date><date date-type="accepted"><day>26</day><month>6</month><year>2009</year></date></history><permissions><copyright-statement>Copyright © 2009, American Society of Plant Biologists</copyright-statement></permissions><abstract><p>RNA editing changes the coding/decoding information relayed by transcripts via nucleotide insertion, deletion, or conversion. Editing of tRNA anticodons by deamination of adenine to inosine is used both by eukaryotes and prokaryotes to expand the decoding capacity of individual tRNAs. This limits the number of tRNA species required for codon-anticodon recognition. We have identified the <italic>Arabidopsis thaliana</italic> gene that codes for tRNA adenosine deaminase arginine (TADA), a chloroplast tRNA editing protein specifically required for deamination of chloroplast (cp)-tRNA<sup>Arg</sup>(ACG) to cp-tRNA<sup>Arg</sup>(ICG). Land plant TADAs have a C-terminal domain similar in sequence and predicted structure to prokaryotic tRNA deaminases and also have very long N-terminal extensions of unknown origin and function. Biochemical and mutant complementation studies showed that the C-terminal domain is sufficient for cognate tRNA deamination both in vitro and in planta. Disruption of <italic>TADA</italic> has profound effects on chloroplast translation efficiency, leading to reduced yields of chloroplast-encoded proteins and impaired photosynthetic function. By contrast, chloroplast transcripts accumulate to levels significantly above those of wild-type plants. Nevertheless, absence of cp-tRNA<sup>Arg</sup>(ICG) is compatible with plant survival, implying that two out of three CGN codon recognition occurs in chloroplasts, though this mechanism is less efficient than wobble pairing.</p></abstract></article-meta><notes><fn-group><fn><p>The authors responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors (<ext-link ext-link-type="uri" xlink:href="www.plantcell.org">www.plantcell.org</ext-link>) are: Etienne Delannoy (<email>edelanno@gmail.com</email>) and José M. Gualberto (<email>jose.gualberto@ibmp-ulp.u-strasbg.fr</email>).</p></fn><fn id="fn1"><label>[W]</label><p>Online version contains Web-only data.</p></fn><fn><p><ext-link ext-link-type="uri" xlink:href="www.plantcell.org/cgi/doi/10.1105/tpc.109.066654">www.plantcell.org/cgi/doi/10.1105/tpc.109.066654</ext-link></p></fn></fn-group></notes></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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