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Demosponge and Sea Anemone Fibrillar Collagen Diversity Reveals the Early Emergence of A/C Clades and the Maintenance of the Modular Structure of Type V/XI Collagens from Sponge to Human*S⃞

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Demosponge and Sea Anemone Fibrillar Collagen Diversity Reveals the Early Emergence of A/C Clades and the Maintenance of the Modular Structure of Type V/XI Collagens from Sponge to Human*S⃞

Auteurs : Jean-Yves Exposito ; Claire Larroux [Australie] ; Caroline Cluzel ; Ulrich Valcourt ; Claire Lethias ; Bernard M. Degnan [Australie]

Source :

The Journal of Biological Chemistry [ 0021-9258 ] ; 2008.

RBID : PMC:2661393

Abstract

Collagens are often considered a metazoan hallmark, with the fibril-forming fibrillar collagens present from sponges to human. From evolutionary studies, three fibrillar collagen clades (named A, B, and C) have been defined and shown to be present in mammals, whereas the emergence of the A and B clades predates the protostome/deuterostome split. Moreover, several C clade fibrillar collagen chains are present in some invertebrate deuterostome genomes but not in protostomes whose genomes have been sequenced. The newly sequenced genomes of the choanoflagellate Monosiga brevicollis, the demosponge Amphimedon queenslandica, and the cnidarians Hydra magnipapillata (Hydra) and Nematostella vectensis (sea anemone) allow us to have a better understanding of the origin and evolution of fibrillar collagens. Analysis of these genomes suggests that an ancestral fibrillar collagen gene arose at the dawn of the Metazoa, before the divergence of sponge and eumetazoan lineages. The duplication events leading to the formation of the three fibrillar collagen clades (A, B, and C) occurred before the eumetazoan radiation. Interestingly, only the B clade fibrillar collagens preserved their characteristic modular structure from sponge to human. This observation is compatible with the suggested primordial function of type V/XI fibrillar collagens in the initiation of the formation of the collagen fibrils.

Url:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2661393

DOI: 10.1074/jbc.M804573200
PubMed: 18697744
PubMed Central: 2661393

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Jean-Yves Exposito

<affiliation><nlm:aff id="N0x200d390N0x4428fc0"> Institut de Biologie et Chimie des Protéines (IBCP), 7 passage du Vercors, Lyon, F69367, France, CNRS, UMR 5086; Université de Lyon, France, Université Lyon 1, France, IFR 128, Lyon, France, and the</nlm:aff>
<wicri:noCountry code="subfield">and the</wicri:noCountry>
</affiliation>

Caroline Cluzel

<affiliation><nlm:aff id="N0x200d390N0x4428fc0"> Institut de Biologie et Chimie des Protéines (IBCP), 7 passage du Vercors, Lyon, F69367, France, CNRS, UMR 5086; Université de Lyon, France, Université Lyon 1, France, IFR 128, Lyon, France, and the</nlm:aff>
<wicri:noCountry code="subfield">and the</wicri:noCountry>
</affiliation>

Ulrich Valcourt

<affiliation><nlm:aff id="N0x200d390N0x4428fc0"> Institut de Biologie et Chimie des Protéines (IBCP), 7 passage du Vercors, Lyon, F69367, France, CNRS, UMR 5086; Université de Lyon, France, Université Lyon 1, France, IFR 128, Lyon, France, and the</nlm:aff>
<wicri:noCountry code="subfield">and the</wicri:noCountry>
</affiliation>

Claire Lethias

<affiliation><nlm:aff id="N0x200d390N0x4428fc0"> Institut de Biologie et Chimie des Protéines (IBCP), 7 passage du Vercors, Lyon, F69367, France, CNRS, UMR 5086; Université de Lyon, France, Université Lyon 1, France, IFR 128, Lyon, France, and the</nlm:aff>
<wicri:noCountry code="subfield">and the</wicri:noCountry>
</affiliation>

Le document en format XML

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 Emergence of A/C Clades and the Maintenance of the Modular Structure of Type
 V/XI Collagens from Sponge to
 Human<xref ref-type="fn" rid="fn1">*</xref>
<xref ref-type="fn" rid="fn2">S⃞</xref>
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<front><div type="abstract" xml:lang="en"><p>Collagens are often considered a metazoan hallmark, with the fibril-forming
 fibrillar collagens present from sponges to human. From evolutionary studies,
 three fibrillar collagen clades (named A, B, and C) have been defined and
 shown to be present in mammals, whereas the emergence of the A and B clades
 predates the protostome/deuterostome split. Moreover, several C clade
 fibrillar collagen chains are present in some invertebrate deuterostome
 genomes but not in protostomes whose genomes have been sequenced. The newly
 sequenced genomes of the choanoflagellate <italic>Monosiga brevicollis</italic>, the
 demosponge <italic>Amphimedon queenslandica</italic>
, and the cnidarians <italic>Hydra
 magnipapillata</italic>
 (Hydra) and <italic>Nematostella vectensis</italic> (sea anemone)
 allow us to have a better understanding of the origin and evolution of
 fibrillar collagens. Analysis of these genomes suggests that an ancestral
 fibrillar collagen gene arose at the dawn of the Metazoa, before the
 divergence of sponge and eumetazoan lineages. The duplication events leading
 to the formation of the three fibrillar collagen clades (A, B, and C) occurred
 before the eumetazoan radiation. Interestingly, only the B clade fibrillar
 collagens preserved their characteristic modular structure from sponge to
 human. This observation is compatible with the suggested primordial function
 of type V/XI fibrillar collagens in the initiation of the formation of the
 collagen fibrils.</p>
</div>
</front>
</TEI>
<pmc article-type="research-article"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
  <front><journal-meta><journal-id journal-id-type="nlm-ta">J Biol Chem</journal-id>
<journal-id journal-id-type="publisher-id">jbc</journal-id>
<journal-title>The Journal of Biological Chemistry</journal-title>
<issn pub-type="ppub">0021-9258</issn>
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<article-id pub-id-type="doi">10.1074/jbc.M804573200</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Glycobiology and Extracellular Matrices</subject>
</subj-group>
</article-categories>
<title-group><article-title>Demosponge and Sea Anemone Fibrillar Collagen Diversity Reveals the Early
 Emergence of A/C Clades and the Maintenance of the Modular Structure of Type
 V/XI Collagens from Sponge to
 Human<xref ref-type="fn" rid="fn1">*</xref>
<xref ref-type="fn" rid="fn2">S⃞</xref>
</article-title>
</title-group>
<contrib-group><contrib contrib-type="author"><name><surname>Exposito</surname>
<given-names>Jean-Yves</given-names>
</name>
<xref ref-type="aff" rid="N0x200d390N0x4428fc0">‡</xref>
<xref ref-type="corresp" rid="cor1">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Larroux</surname>
<given-names>Claire</given-names>
</name>
<xref ref-type="aff" rid="N0x200d390N0x4428fc0">§</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Cluzel</surname>
<given-names>Caroline</given-names>
</name>
<xref ref-type="aff" rid="N0x200d390N0x4428fc0">‡</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Valcourt</surname>
<given-names>Ulrich</given-names>
</name>
<xref ref-type="aff" rid="N0x200d390N0x4428fc0">‡</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Lethias</surname>
<given-names>Claire</given-names>
</name>
<xref ref-type="aff" rid="N0x200d390N0x4428fc0">‡</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Degnan</surname>
<given-names>Bernard M.</given-names>
</name>
<xref ref-type="aff" rid="N0x200d390N0x4428fc0">§</xref>
</contrib>
</contrib-group>
<aff id="N0x200d390N0x4428fc0"><label>‡</label>
 Institut de Biologie et Chimie des Protéines (IBCP), 7 passage du Vercors, Lyon, F69367, France, CNRS, UMR 5086; Université de Lyon, France, Université Lyon 1, France, IFR 128, Lyon, France, and the<label>§</label>
School of Integrative Biology, University of Queensland, Brisbane, Queensland 4072, Australia</aff>
<author-notes><fn id="cor1"><label>1</label>
<p>To whom correspondence should be addressed. Tel.: 33-4-72-72-26-77; Fax:
 33-4-72-72-26-04; E-mail:
 <email>jy.exposito@ibcp.fr</email>.
 </p>
</fn>
</author-notes>
<pub-date pub-type="ppub"><day>17</day>
<month>10</month>
<year>2008</year>
</pub-date>
<volume>283</volume>
<issue>42</issue>
<fpage>28226</fpage>
<lpage>28235</lpage>
<history><date date-type="received"><day>16</day>
<month>6</month>
<year>2008</year>
</date>
<date date-type="rev-recd"><day>29</day>
<month>7</month>
<year>2008</year>
</date>
</history>
<permissions><copyright-statement>Copyright © 2008, The American Society for Biochemistry
 and Molecular Biology, Inc.</copyright-statement>
</permissions>
<self-uri xlink:title="pdf" xlink:href="zbc04208028226.pdf"></self-uri>
<abstract><p>Collagens are often considered a metazoan hallmark, with the fibril-forming
 fibrillar collagens present from sponges to human. From evolutionary studies,
 three fibrillar collagen clades (named A, B, and C) have been defined and
 shown to be present in mammals, whereas the emergence of the A and B clades
 predates the protostome/deuterostome split. Moreover, several C clade
 fibrillar collagen chains are present in some invertebrate deuterostome
 genomes but not in protostomes whose genomes have been sequenced. The newly
 sequenced genomes of the choanoflagellate <italic>Monosiga brevicollis</italic>, the
 demosponge <italic>Amphimedon queenslandica</italic>
, and the cnidarians <italic>Hydra
 magnipapillata</italic>
 (Hydra) and <italic>Nematostella vectensis</italic> (sea anemone)
 allow us to have a better understanding of the origin and evolution of
 fibrillar collagens. Analysis of these genomes suggests that an ancestral
 fibrillar collagen gene arose at the dawn of the Metazoa, before the
 divergence of sponge and eumetazoan lineages. The duplication events leading
 to the formation of the three fibrillar collagen clades (A, B, and C) occurred
 before the eumetazoan radiation. Interestingly, only the B clade fibrillar
 collagens preserved their characteristic modular structure from sponge to
 human. This observation is compatible with the suggested primordial function
 of type V/XI fibrillar collagens in the initiation of the formation of the
 collagen fibrils.</p>
</abstract>
</article-meta>
<notes><fn-group><fn id="fn1"><label>*</label>
<p>The costs of publication of this article were defrayed in part by the
 payment of page charges. This article must therefore be hereby marked
 “<italic>advertisement</italic>” in accordance with 18 U.S.C. Section 1734
 solely to indicate this fact.</p>
</fn>
<fn id="fn2"><label>S⃞</label>
<p>The on-line version of this article (available at
 <ext-link ext-link-type="uri" xlink:href="http://www.jbc.org">http://www.jbc.org</ext-link>)
 contains supplemental Figs. S1–S4.</p>
</fn>
</fn-group>
</notes>
</front>
</pmc>
</record>

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Demosponge and Sea Anemone Fibrillar Collagen Diversity Reveals the Early Emergence of A/C Clades and the Maintenance of the Modular Structure of Type V/XI Collagens from Sponge to Human*S⃞

Demosponge and Sea Anemone Fibrillar Collagen Diversity Reveals the Early Emergence of A/C Clades and the Maintenance of the Modular Structure of Type V/XI Collagens from Sponge to Human*S⃞

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