Characterizing Embryonic Gene Expression Patterns in the Mouse Using Nonredundant Sequence-Based Selection
Identifieur interne : 000D91 ( Pmc/Curation ); précédent : 000D90; suivant : 000D92Characterizing Embryonic Gene Expression Patterns in the Mouse Using Nonredundant Sequence-Based Selection
Auteurs : Rita Sousa-Nunes ; Amer Ahmed Rana ; Ross Kettleborough ; Joshua M. Brickman ; Melanie Clements ; Alistair Forrest ; Sean Grimmond ; Philip Avner ; James C. Smith ; Sally L. Dunwoodie ; Rosa S. P. BeddingtonSource :
- Genome Research [ 1088-9051 ] ; 2003.
Abstract
This article investigates the expression patterns of 160 genes that are expressed during early mouse development. The cDNAs were isolated from 7.5 d postcoitum (dpc) endoderm, a region that comprises visceral endoderm (VE), definitive endoderm, and the node–tissues that are required for the initial steps of axial specification and tissue patterning in the mouse. To avoid examining the same gene more than once, and to exclude potentially ubiquitously expressed housekeeping genes, cDNA sequence was derived from 1978 clones of the
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DOI: 10.1101/gr.1362303
PubMed: 14613977
PubMed Central: 403803
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Characterizing Embryonic Gene Expression Patterns in the Mouse Using Nonredundant Sequence-Based Selection</title><author><name sortKey="Sousa Nunes, Rita" sort="Sousa Nunes, Rita" uniqKey="Sousa Nunes R" first="Rita" last="Sousa-Nunes">Rita Sousa-Nunes</name><affiliation><nlm:aff id="aff1"><italic>Division of Mammalian Development, National Institute for Medical Research, The Ridgeway, London NW7 1AA, United Kingdom</italic></nlm:aff></affiliation></author><author><name sortKey="Rana, Amer Ahmed" sort="Rana, Amer Ahmed" uniqKey="Rana A" first="Amer Ahmed" last="Rana">Amer Ahmed Rana</name><affiliation><nlm:aff id="aff1"><italic>Division of Mammalian Development, National Institute for Medical Research, The Ridgeway, London NW7 1AA, United Kingdom</italic></nlm:aff></affiliation></author><author><name sortKey="Kettleborough, Ross" sort="Kettleborough, Ross" uniqKey="Kettleborough R" first="Ross" last="Kettleborough">Ross Kettleborough</name><affiliation><nlm:aff id="aff1"><italic>Division of Mammalian Development, National Institute for Medical Research, The Ridgeway, London NW7 1AA, United Kingdom</italic></nlm:aff></affiliation></author><author><name sortKey="Brickman, Joshua M" sort="Brickman, Joshua M" uniqKey="Brickman J" first="Joshua M." last="Brickman">Joshua M. Brickman</name><affiliation><nlm:aff id="aff1"><italic>Division of Mammalian Development, National Institute for Medical Research, The Ridgeway, London NW7 1AA, United Kingdom</italic></nlm:aff></affiliation></author><author><name sortKey="Clements, Melanie" sort="Clements, Melanie" uniqKey="Clements M" first="Melanie" last="Clements">Melanie Clements</name><affiliation><nlm:aff id="aff1"><italic>Division of Mammalian Development, National Institute for Medical Research, The Ridgeway, London NW7 1AA, United Kingdom</italic></nlm:aff></affiliation></author><author><name sortKey="Forrest, Alistair" sort="Forrest, Alistair" uniqKey="Forrest A" first="Alistair" last="Forrest">Alistair Forrest</name><affiliation><nlm:aff id="aff2"><italic>Institute of Molecular Bioscience, University of Queensland, 4072 Australia</italic></nlm:aff></affiliation></author><author><name sortKey="Grimmond, Sean" sort="Grimmond, Sean" uniqKey="Grimmond S" first="Sean" last="Grimmond">Sean Grimmond</name><affiliation><nlm:aff id="aff2"><italic>Institute of Molecular Bioscience, University of Queensland, 4072 Australia</italic></nlm:aff></affiliation></author><author><name sortKey="Avner, Philip" sort="Avner, Philip" uniqKey="Avner P" first="Philip" last="Avner">Philip Avner</name><affiliation><nlm:aff id="aff3"><italic>Unité Génétique Moléculaire Murine, Institut Pasteur, 75015 Paris, France</italic></nlm:aff></affiliation></author><author><name sortKey="Smith, James C" sort="Smith, James C" uniqKey="Smith J" first="James C." last="Smith">James C. Smith</name><affiliation><nlm:aff id="aff4"><italic>Wellcome Trust/Cancer Research UK Institute and Department of Zoology, University of Cambridge, Cambridge CB2 1QR, United Kingdom</italic></nlm:aff></affiliation></author><author><name sortKey="Dunwoodie, Sally L" sort="Dunwoodie, Sally L" uniqKey="Dunwoodie S" first="Sally L." last="Dunwoodie">Sally L. Dunwoodie</name><affiliation><nlm:aff id="aff1"><italic>Division of Mammalian Development, National Institute for Medical Research, The Ridgeway, London NW7 1AA, United Kingdom</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff5"><italic>Developmental Biology Program, Victor Chang Cardiac Research Institute, Darlinghurst, 2010, Australia</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff6"><italic>Department of Biotechnology and Biomolecular Sciences, University of New South Wales, Kensington, NSW 2033, Australia</italic></nlm:aff></affiliation></author><author><name sortKey="Beddington, Rosa S P" sort="Beddington, Rosa S P" uniqKey="Beddington R" first="Rosa S. P." last="Beddington">Rosa S. P. Beddington</name><affiliation><nlm:aff id="aff1"><italic>Division of Mammalian Development, National Institute for Medical Research, The Ridgeway, London NW7 1AA, United Kingdom</italic></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">14613977</idno><idno type="pmc">403803</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC403803</idno><idno type="RBID">PMC:403803</idno><idno type="doi">10.1101/gr.1362303</idno><date when="2003">2003</date><idno type="wicri:Area/Pmc/Corpus">000F30</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000F30</idno><idno type="wicri:Area/Pmc/Curation">000D91</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000D91</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Characterizing Embryonic Gene Expression Patterns in the Mouse Using Nonredundant Sequence-Based Selection</title><author><name sortKey="Sousa Nunes, Rita" sort="Sousa Nunes, Rita" uniqKey="Sousa Nunes R" first="Rita" last="Sousa-Nunes">Rita Sousa-Nunes</name><affiliation><nlm:aff id="aff1"><italic>Division of Mammalian Development, National Institute for Medical Research, The Ridgeway, London NW7 1AA, United Kingdom</italic></nlm:aff></affiliation></author><author><name sortKey="Rana, Amer Ahmed" sort="Rana, Amer Ahmed" uniqKey="Rana A" first="Amer Ahmed" last="Rana">Amer Ahmed Rana</name><affiliation><nlm:aff id="aff1"><italic>Division of Mammalian Development, National Institute for Medical Research, The Ridgeway, London NW7 1AA, United Kingdom</italic></nlm:aff></affiliation></author><author><name sortKey="Kettleborough, Ross" sort="Kettleborough, Ross" uniqKey="Kettleborough R" first="Ross" last="Kettleborough">Ross Kettleborough</name><affiliation><nlm:aff id="aff1"><italic>Division of Mammalian Development, National Institute for Medical Research, The Ridgeway, London NW7 1AA, United Kingdom</italic></nlm:aff></affiliation></author><author><name sortKey="Brickman, Joshua M" sort="Brickman, Joshua M" uniqKey="Brickman J" first="Joshua M." last="Brickman">Joshua M. Brickman</name><affiliation><nlm:aff id="aff1"><italic>Division of Mammalian Development, National Institute for Medical Research, The Ridgeway, London NW7 1AA, United Kingdom</italic></nlm:aff></affiliation></author><author><name sortKey="Clements, Melanie" sort="Clements, Melanie" uniqKey="Clements M" first="Melanie" last="Clements">Melanie Clements</name><affiliation><nlm:aff id="aff1"><italic>Division of Mammalian Development, National Institute for Medical Research, The Ridgeway, London NW7 1AA, United Kingdom</italic></nlm:aff></affiliation></author><author><name sortKey="Forrest, Alistair" sort="Forrest, Alistair" uniqKey="Forrest A" first="Alistair" last="Forrest">Alistair Forrest</name><affiliation><nlm:aff id="aff2"><italic>Institute of Molecular Bioscience, University of Queensland, 4072 Australia</italic></nlm:aff></affiliation></author><author><name sortKey="Grimmond, Sean" sort="Grimmond, Sean" uniqKey="Grimmond S" first="Sean" last="Grimmond">Sean Grimmond</name><affiliation><nlm:aff id="aff2"><italic>Institute of Molecular Bioscience, University of Queensland, 4072 Australia</italic></nlm:aff></affiliation></author><author><name sortKey="Avner, Philip" sort="Avner, Philip" uniqKey="Avner P" first="Philip" last="Avner">Philip Avner</name><affiliation><nlm:aff id="aff3"><italic>Unité Génétique Moléculaire Murine, Institut Pasteur, 75015 Paris, France</italic></nlm:aff></affiliation></author><author><name sortKey="Smith, James C" sort="Smith, James C" uniqKey="Smith J" first="James C." last="Smith">James C. Smith</name><affiliation><nlm:aff id="aff4"><italic>Wellcome Trust/Cancer Research UK Institute and Department of Zoology, University of Cambridge, Cambridge CB2 1QR, United Kingdom</italic></nlm:aff></affiliation></author><author><name sortKey="Dunwoodie, Sally L" sort="Dunwoodie, Sally L" uniqKey="Dunwoodie S" first="Sally L." last="Dunwoodie">Sally L. Dunwoodie</name><affiliation><nlm:aff id="aff1"><italic>Division of Mammalian Development, National Institute for Medical Research, The Ridgeway, London NW7 1AA, United Kingdom</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff5"><italic>Developmental Biology Program, Victor Chang Cardiac Research Institute, Darlinghurst, 2010, Australia</italic></nlm:aff></affiliation><affiliation><nlm:aff id="aff6"><italic>Department of Biotechnology and Biomolecular Sciences, University of New South Wales, Kensington, NSW 2033, Australia</italic></nlm:aff></affiliation></author><author><name sortKey="Beddington, Rosa S P" sort="Beddington, Rosa S P" uniqKey="Beddington R" first="Rosa S. P." last="Beddington">Rosa S. P. Beddington</name><affiliation><nlm:aff id="aff1"><italic>Division of Mammalian Development, National Institute for Medical Research, The Ridgeway, London NW7 1AA, United Kingdom</italic></nlm:aff></affiliation></author></analytic><series><title level="j">Genome Research</title><idno type="ISSN">1088-9051</idno><imprint><date when="2003">2003</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>This article investigates the expression patterns of 160 genes that are expressed during early mouse development. The cDNAs were isolated from 7.5 d postcoitum (dpc) endoderm, a region that comprises visceral endoderm (VE), definitive endoderm, and the node–tissues that are required for the initial steps of axial specification and tissue patterning in the mouse. To avoid examining the same gene more than once, and to exclude potentially ubiquitously expressed housekeeping genes, cDNA sequence was derived from 1978 clones of the <italic>Endoderm</italic> library. These yielded 1440 distinct cDNAs, of which 123 proved to be novel in the mouse. In situ hybridization analysis was carried out on 160 of the cDNAs, and of these, 29 (18%) proved to have restricted expression patterns.</p></div></front></TEI><pmc article-type="letter"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Genome Res</journal-id><journal-id journal-id-type="publisher-id">genome</journal-id><journal-title>Genome Research</journal-title><issn pub-type="ppub">1088-9051</issn><publisher><publisher-name>Cold Spring Harbor Laboratory Press</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">14613977</article-id><article-id pub-id-type="pmc">403803</article-id><article-id pub-id-type="publisher-id">0132609</article-id><article-id pub-id-type="doi">10.1101/gr.1362303</article-id><article-categories><subj-group subj-group-type="heading"><subject>Letters</subject></subj-group></article-categories><title-group><article-title>Characterizing Embryonic Gene Expression Patterns in the Mouse Using Nonredundant Sequence-Based Selection</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Sousa-Nunes</surname><given-names>Rita</given-names></name><xref ref-type="aff" rid="aff1">1</xref><xref ref-type="fn" rid="fn4">10</xref></contrib><contrib contrib-type="author"><name><surname>Rana</surname><given-names>Amer Ahmed</given-names></name><xref ref-type="aff" rid="aff1">1</xref><xref ref-type="fn" rid="fn4">10</xref><xref ref-type="fn" rid="fn1">7</xref></contrib><contrib contrib-type="author"><name><surname>Kettleborough</surname><given-names>Ross</given-names></name><xref ref-type="aff" rid="aff1">1</xref><xref ref-type="fn" rid="fn4">10</xref></contrib><contrib contrib-type="author"><name><surname>Brickman</surname><given-names>Joshua M.</given-names></name><xref ref-type="aff" rid="aff1">1</xref><xref ref-type="fn" rid="fn2">8</xref></contrib><contrib contrib-type="author"><name><surname>Clements</surname><given-names>Melanie</given-names></name><xref ref-type="aff" rid="aff1">1</xref></contrib><contrib contrib-type="author"><name><surname>Forrest</surname><given-names>Alistair</given-names></name><xref ref-type="aff" rid="aff2">2</xref></contrib><contrib contrib-type="author"><name><surname>Grimmond</surname><given-names>Sean</given-names></name><xref ref-type="aff" rid="aff2">2</xref></contrib><contrib contrib-type="author"><name><surname>Avner</surname><given-names>Philip</given-names></name><xref ref-type="aff" rid="aff3">3</xref></contrib><contrib contrib-type="author"><name><surname>Smith</surname><given-names>James C.</given-names></name><xref ref-type="aff" rid="aff4">4</xref><xref ref-type="fn" rid="fn5">11</xref></contrib><contrib contrib-type="author"><name><surname>Dunwoodie</surname><given-names>Sally L.</given-names></name><xref ref-type="aff" rid="aff1">1</xref><xref ref-type="aff" rid="aff5">5</xref><xref ref-type="aff" rid="aff6">6</xref><xref ref-type="fn" rid="fn5">11</xref></contrib><contrib contrib-type="author"><name><surname>Beddington</surname><given-names>Rosa S.P.</given-names></name><xref ref-type="aff" rid="aff1">1</xref><xref ref-type="fn" rid="fn3">9</xref></contrib></contrib-group><aff id="aff1"><label>1</label><italic>Division of Mammalian Development, National Institute for Medical Research, The Ridgeway, London NW7 1AA, United Kingdom</italic></aff><aff id="aff2"><label>2</label><italic>Institute of Molecular Bioscience, University of Queensland, 4072 Australia</italic></aff><aff id="aff3"><label>3</label><italic>Unité Génétique Moléculaire Murine, Institut Pasteur, 75015 Paris, France</italic></aff><aff id="aff4"><label>4</label><italic>Wellcome Trust/Cancer Research UK Institute and Department of Zoology, University of Cambridge, Cambridge CB2 1QR, United Kingdom</italic></aff><aff id="aff5"><label>5</label><italic>Developmental Biology Program, Victor Chang Cardiac Research Institute, Darlinghurst, 2010, Australia</italic></aff><aff id="aff6"><label>6</label><italic>Department of Biotechnology and Biomolecular Sciences, University of New South Wales, Kensington, NSW 2033, Australia</italic></aff><author-notes><fn id="fn1"><label>7</label><p><bold>Present address: Wellcome Trust/Cancer Research UK Institute, Cambridge CB2 1QR, UK</bold></p></fn><fn id="fn2"><label>8</label><p><bold>Present address: Institute for Stem Cell Research, The University of Edinburgh, Edinburgh EH9 3JQ, UK.</bold></p></fn><fn id="fn3"><label>9</label><p><bold>Deceased May 18, 2001.</bold></p></fn><fn id="fn4"><label>10</label><p><bold>These authors contributed equally to the work described.</bold></p></fn><fn id="fn5"><label>11</label><p><bold>Corresponding authors. </bold><bold> E-MAIL </bold><email>jim@welc.cam.ac.uk</email><bold>; FAX 44-1223-33413. </bold><bold> E-MAIL </bold><email>s.dunwoodie@victorchang.unsw.edu.au</email><bold>; FAX: 61-02-9295-8501.</bold></p></fn></author-notes><pub-date pub-type="ppub"><month>12</month><year>2003</year></pub-date><volume>13</volume><issue>12</issue><fpage>2609</fpage><lpage>2620</lpage><history><date date-type="received"><day>24</day><month>3</month><year>2003</year></date><date date-type="accepted"><day>18</day><month>9</month><year>2003</year></date></history><copyright-statement>Copyright © 2003, Cold Spring Harbor Laboratory Press</copyright-statement><copyright-year>2003</copyright-year><abstract><p>This article investigates the expression patterns of 160 genes that are expressed during early mouse development. The cDNAs were isolated from 7.5 d postcoitum (dpc) endoderm, a region that comprises visceral endoderm (VE), definitive endoderm, and the node–tissues that are required for the initial steps of axial specification and tissue patterning in the mouse. To avoid examining the same gene more than once, and to exclude potentially ubiquitously expressed housekeeping genes, cDNA sequence was derived from 1978 clones of the <italic>Endoderm</italic> library. These yielded 1440 distinct cDNAs, of which 123 proved to be novel in the mouse. In situ hybridization analysis was carried out on 160 of the cDNAs, and of these, 29 (18%) proved to have restricted expression patterns.</p></abstract></article-meta><notes><fn-group><fn><p>Article and publication are at http://www.genome.org/cgi/doi/10.1101/gr.1362303. Article published online before print in November 2003.</p></fn></fn-group></notes></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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