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Open data set of live cyanobacterial cells imaged using an X-ray laser

Identifieur interne : 000668 ( Pmc/Curation ); précédent : 000667; suivant : 000669

Open data set of live cyanobacterial cells imaged using an X-ray laser

Auteurs : Gijs Van Der Schot [Suède] ; Martin Svenda [Suède] ; Filipe R. N. C. Maia [Suède] ; Max F. Hantke [Suède] ; Daniel P. Deponte [États-Unis] ; M. Marvin Seibert [Suède] ; Andrew Aquila [États-Unis] ; Joachim Schulz [Allemagne] ; Richard A. Kirian [États-Unis] ; Mengning Liang [États-Unis] ; Francesco Stellato [Allemagne, Italie] ; Sadia Bari [Allemagne] ; Bianca Iwan [Suède] ; Jakob Andreasson [Suède, République tchèque] ; Nicusor Timneanu [Suède] ; Johan Bielecki [Suède] ; Daniel Westphal [Suède] ; Francisca Nunes De Almeida [Royaume-Uni] ; Duško Odi [Suède, Slovénie] ; Dirk Hasse [Suède] ; Gunilla H. Carlsson [Suède] ; Daniel S. D. Larsson [Suède] ; Anton Barty [Allemagne] ; Andrew V. Martin [Australie] ; Sebastian Schorb [Allemagne] ; Christoph Bostedt [États-Unis] ; John D. Bozek [France] ; Sebastian Carron [États-Unis] ; Ken Ferguson [États-Unis] ; Daniel Rolles [Allemagne] ; Artem Rudenko [Allemagne] ; Sascha W. Epp [Allemagne] ; Lutz Foucar [Allemagne] ; Benedikt Rudek [Allemagne] ; Benjamin Erk [Allemagne] ; Robert Hartmann [Allemagne] ; Nils Kimmel [Allemagne] ; Peter Holl [Allemagne] ; Lars Englert [Allemagne] ; N. Duane Loh [Singapour] ; Henry N. Chapman [Allemagne] ; Inger Andersson [Suède] ; Janos Hajdu [Suède, Allemagne] ; Tomas Ekeberg [Suède]

Source :

RBID : PMC:4968219

Abstract

Structural studies on living cells by conventional methods are limited to low resolution because radiation damage kills cells long before the necessary dose for high resolution can be delivered. X-ray free-electron lasers circumvent this problem by outrunning key damage processes with an ultra-short and extremely bright coherent X-ray pulse. Diffraction-before-destruction experiments provide high-resolution data from cells that are alive when the femtosecond X-ray pulse traverses the sample. This paper presents two data sets from micron-sized cyanobacteria obtained at the Linac Coherent Light Source, containing a total of 199,000 diffraction patterns. Utilizing this type of diffraction data will require the development of new analysis methods and algorithms for studying structure and structural variability in large populations of cells and to create abstract models. Such studies will allow us to understand living cells and populations of cells in new ways. New X-ray lasers, like the European XFEL, will produce billions of pulses per day, and could open new areas in structural sciences.


Url:
DOI: 10.1038/sdata.2016.58
PubMed: 27479514
PubMed Central: 4968219

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PMC:4968219

Le document en format XML

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<name sortKey="Rudenko, Artem" sort="Rudenko, Artem" uniqKey="Rudenko A" first="Artem" last="Rudenko">Artem Rudenko</name>
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<affiliation wicri:level="1">
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<institution>Max Planck Advanced Study Group, Center for Free Electron Laser Science</institution>
, Notkestrasse 85, 22607 Hamburg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="a16">
<institution>Max-Planck-Institut für medizinische Forschung</institution>
, Jahnstr. 29, 69120 Heidelberg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Rudek, Benedikt" sort="Rudek, Benedikt" uniqKey="Rudek B" first="Benedikt" last="Rudek">Benedikt Rudek</name>
<affiliation wicri:level="1">
<nlm:aff id="a15">
<institution>Max Planck Advanced Study Group, Center for Free Electron Laser Science</institution>
, Notkestrasse 85, 22607 Hamburg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="a17">
<institution>Max-Planck-Institut für Kernphysik</institution>
, Saupfercheckweg 1, 69117 Heidelberg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Erk, Benjamin" sort="Erk, Benjamin" uniqKey="Erk B" first="Benjamin" last="Erk">Benjamin Erk</name>
<affiliation wicri:level="1">
<nlm:aff id="a15">
<institution>Max Planck Advanced Study Group, Center for Free Electron Laser Science</institution>
, Notkestrasse 85, 22607 Hamburg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="a17">
<institution>Max-Planck-Institut für Kernphysik</institution>
, Saupfercheckweg 1, 69117 Heidelberg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Hartmann, Robert" sort="Hartmann, Robert" uniqKey="Hartmann R" first="Robert" last="Hartmann">Robert Hartmann</name>
<affiliation wicri:level="1">
<nlm:aff id="a18">
<institution>PNSensor GmbH</institution>
, Otto-Hahn-Ring 6, 81739 Munich,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Kimmel, Nils" sort="Kimmel, Nils" uniqKey="Kimmel N" first="Nils" last="Kimmel">Nils Kimmel</name>
<affiliation wicri:level="1">
<nlm:aff id="a19">
<institution>Max-Planck-Institut Halbleiterlabor</institution>
, Otto-Hahn-Ring 6, 81739 München,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="a20">
<institution>Max-Planck-Institut für extraterrestrische Physik</institution>
, Giessenbachstrasse, 85741 Garching,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Holl, Peter" sort="Holl, Peter" uniqKey="Holl P" first="Peter" last="Holl">Peter Holl</name>
<affiliation wicri:level="1">
<nlm:aff id="a18">
<institution>PNSensor GmbH</institution>
, Otto-Hahn-Ring 6, 81739 Munich,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Englert, Lars" sort="Englert, Lars" uniqKey="Englert L" first="Lars" last="Englert">Lars Englert</name>
<affiliation wicri:level="1">
<nlm:aff id="a20">
<institution>Max-Planck-Institut für extraterrestrische Physik</institution>
, Giessenbachstrasse, 85741 Garching,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="a21">
<institution>Ultrafast Coherent Dynamics Group, University Oldenburg</institution>
, Carl-von-Ossietzky Strasse 9-11, 26129 Oldenburg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Loh, N Duane" sort="Loh, N Duane" uniqKey="Loh N" first="N. Duane" last="Loh">N. Duane Loh</name>
<affiliation wicri:level="1">
<nlm:aff id="a22">
<institution>Centre for BioImaging Sciences, National University of Singapore</institution>
, 14 Science Drive 4 Blk S1 A, Singapore 117546,
<country>Singapore</country>
</nlm:aff>
<country xml:lang="fr">Singapour</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Chapman, Henry N" sort="Chapman, Henry N" uniqKey="Chapman H" first="Henry N." last="Chapman">Henry N. Chapman</name>
<affiliation wicri:level="1">
<nlm:aff id="a5">
<institution>Center for Free-Electron Laser Science, DESY</institution>
, Notkestrasse 85, 22607 Hamburg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="a23">
<institution>University of Hamburg</institution>
, Notkestrasse 85, 22607 Hamburg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Andersson, Inger" sort="Andersson, Inger" uniqKey="Andersson I" first="Inger" last="Andersson">Inger Andersson</name>
<affiliation wicri:level="1">
<nlm:aff id="a1">
<institution>Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University</institution>
, Husargatan 3 (Box 596), SE-751 24 Uppsala,
<country>Sweden</country>
</nlm:aff>
<country xml:lang="fr">Suède</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Hajdu, Janos" sort="Hajdu, Janos" uniqKey="Hajdu J" first="Janos" last="Hajdu">Janos Hajdu</name>
<affiliation wicri:level="1">
<nlm:aff id="a1">
<institution>Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University</institution>
, Husargatan 3 (Box 596), SE-751 24 Uppsala,
<country>Sweden</country>
</nlm:aff>
<country xml:lang="fr">Suède</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="a3">
<institution>European XFEL</institution>
, Albert-Einstein-Ring 19, 22761 Hamburg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Ekeberg, Tomas" sort="Ekeberg, Tomas" uniqKey="Ekeberg T" first="Tomas" last="Ekeberg">Tomas Ekeberg</name>
<affiliation wicri:level="1">
<nlm:aff id="a1">
<institution>Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University</institution>
, Husargatan 3 (Box 596), SE-751 24 Uppsala,
<country>Sweden</country>
</nlm:aff>
<country xml:lang="fr">Suède</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PMC</idno>
<idno type="pmid">27479514</idno>
<idno type="pmc">4968219</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4968219</idno>
<idno type="RBID">PMC:4968219</idno>
<idno type="doi">10.1038/sdata.2016.58</idno>
<date when="2016">2016</date>
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<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000669</idno>
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<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000668</idno>
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<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en" level="a" type="main">Open data set of live cyanobacterial cells imaged using an X-ray laser</title>
<author>
<name sortKey="Van Der Schot, Gijs" sort="Van Der Schot, Gijs" uniqKey="Van Der Schot G" first="Gijs" last="Van Der Schot">Gijs Van Der Schot</name>
<affiliation wicri:level="1">
<nlm:aff id="a1">
<institution>Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University</institution>
, Husargatan 3 (Box 596), SE-751 24 Uppsala,
<country>Sweden</country>
</nlm:aff>
<country xml:lang="fr">Suède</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Svenda, Martin" sort="Svenda, Martin" uniqKey="Svenda M" first="Martin" last="Svenda">Martin Svenda</name>
<affiliation wicri:level="1">
<nlm:aff id="a1">
<institution>Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University</institution>
, Husargatan 3 (Box 596), SE-751 24 Uppsala,
<country>Sweden</country>
</nlm:aff>
<country xml:lang="fr">Suède</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Maia, Filipe R N C" sort="Maia, Filipe R N C" uniqKey="Maia F" first="Filipe R. N. C." last="Maia">Filipe R. N. C. Maia</name>
<affiliation wicri:level="1">
<nlm:aff id="a1">
<institution>Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University</institution>
, Husargatan 3 (Box 596), SE-751 24 Uppsala,
<country>Sweden</country>
</nlm:aff>
<country xml:lang="fr">Suède</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Hantke, Max F" sort="Hantke, Max F" uniqKey="Hantke M" first="Max F." last="Hantke">Max F. Hantke</name>
<affiliation wicri:level="1">
<nlm:aff id="a1">
<institution>Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University</institution>
, Husargatan 3 (Box 596), SE-751 24 Uppsala,
<country>Sweden</country>
</nlm:aff>
<country xml:lang="fr">Suède</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Deponte, Daniel P" sort="Deponte, Daniel P" uniqKey="Deponte D" first="Daniel P." last="Deponte">Daniel P. Deponte</name>
<affiliation wicri:level="1">
<nlm:aff id="a2">
<institution>LCLS, SLAC National Accelerator Laboratory</institution>
, 2575 Sand Hill Road, Menlo Park, California 94025,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Seibert, M Marvin" sort="Seibert, M Marvin" uniqKey="Seibert M" first="M. Marvin" last="Seibert">M. Marvin Seibert</name>
<affiliation wicri:level="1">
<nlm:aff id="a1">
<institution>Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University</institution>
, Husargatan 3 (Box 596), SE-751 24 Uppsala,
<country>Sweden</country>
</nlm:aff>
<country xml:lang="fr">Suède</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Aquila, Andrew" sort="Aquila, Andrew" uniqKey="Aquila A" first="Andrew" last="Aquila">Andrew Aquila</name>
<affiliation wicri:level="1">
<nlm:aff id="a2">
<institution>LCLS, SLAC National Accelerator Laboratory</institution>
, 2575 Sand Hill Road, Menlo Park, California 94025,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Schulz, Joachim" sort="Schulz, Joachim" uniqKey="Schulz J" first="Joachim" last="Schulz">Joachim Schulz</name>
<affiliation wicri:level="1">
<nlm:aff id="a3">
<institution>European XFEL</institution>
, Albert-Einstein-Ring 19, 22761 Hamburg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Kirian, Richard A" sort="Kirian, Richard A" uniqKey="Kirian R" first="Richard A." last="Kirian">Richard A. Kirian</name>
<affiliation wicri:level="1">
<nlm:aff id="a4">
<institution>Arizona State University, Physics Department</institution>
, PO Box 871504, Tempe, Arizona 85287-1504,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Liang, Mengning" sort="Liang, Mengning" uniqKey="Liang M" first="Mengning" last="Liang">Mengning Liang</name>
<affiliation wicri:level="1">
<nlm:aff id="a2">
<institution>LCLS, SLAC National Accelerator Laboratory</institution>
, 2575 Sand Hill Road, Menlo Park, California 94025,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Stellato, Francesco" sort="Stellato, Francesco" uniqKey="Stellato F" first="Francesco" last="Stellato">Francesco Stellato</name>
<affiliation wicri:level="1">
<nlm:aff id="a5">
<institution>Center for Free-Electron Laser Science, DESY</institution>
, Notkestrasse 85, 22607 Hamburg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="a6">
<institution>I.N.F.N. and Physics Department, University of Rome ‘Tor Vergata’</institution>
, Via della Ricerca Scientifica 1, 00133 Rome,
<country>Italy</country>
</nlm:aff>
<country xml:lang="fr">Italie</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Bari, Sadia" sort="Bari, Sadia" uniqKey="Bari S" first="Sadia" last="Bari">Sadia Bari</name>
<affiliation wicri:level="1">
<nlm:aff id="a3">
<institution>European XFEL</institution>
, Albert-Einstein-Ring 19, 22761 Hamburg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="a7">
<institution>Deutsches Elektronen-Synchrotron DESY</institution>
, Notkestrasse 85, 22607 Hamburg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Iwan, Bianca" sort="Iwan, Bianca" uniqKey="Iwan B" first="Bianca" last="Iwan">Bianca Iwan</name>
<affiliation wicri:level="1">
<nlm:aff id="a1">
<institution>Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University</institution>
, Husargatan 3 (Box 596), SE-751 24 Uppsala,
<country>Sweden</country>
</nlm:aff>
<country xml:lang="fr">Suède</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Andreasson, Jakob" sort="Andreasson, Jakob" uniqKey="Andreasson J" first="Jakob" last="Andreasson">Jakob Andreasson</name>
<affiliation wicri:level="1">
<nlm:aff id="a1">
<institution>Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University</institution>
, Husargatan 3 (Box 596), SE-751 24 Uppsala,
<country>Sweden</country>
</nlm:aff>
<country xml:lang="fr">Suède</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="a8">
<institution>ELI beamlines, Institute of Physics, Academy of Sciences of the Czech Republic</institution>
, Na Slovance 2, 18221 Prague,
<country>Czech Republic</country>
</nlm:aff>
<country xml:lang="fr">République tchèque</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Timneanu, Nicusor" sort="Timneanu, Nicusor" uniqKey="Timneanu N" first="Nicusor" last="Timneanu">Nicusor Timneanu</name>
<affiliation wicri:level="1">
<nlm:aff id="a1">
<institution>Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University</institution>
, Husargatan 3 (Box 596), SE-751 24 Uppsala,
<country>Sweden</country>
</nlm:aff>
<country xml:lang="fr">Suède</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="a9">
<institution>Department of Physics and Astronomy, Uppsala University</institution>
, Lägerhyddsvägen 1, Box 516, SE-751 20 Uppsala,
<country>Sweden</country>
</nlm:aff>
<country xml:lang="fr">Suède</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Bielecki, Johan" sort="Bielecki, Johan" uniqKey="Bielecki J" first="Johan" last="Bielecki">Johan Bielecki</name>
<affiliation wicri:level="1">
<nlm:aff id="a1">
<institution>Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University</institution>
, Husargatan 3 (Box 596), SE-751 24 Uppsala,
<country>Sweden</country>
</nlm:aff>
<country xml:lang="fr">Suède</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Westphal, Daniel" sort="Westphal, Daniel" uniqKey="Westphal D" first="Daniel" last="Westphal">Daniel Westphal</name>
<affiliation wicri:level="1">
<nlm:aff id="a1">
<institution>Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University</institution>
, Husargatan 3 (Box 596), SE-751 24 Uppsala,
<country>Sweden</country>
</nlm:aff>
<country xml:lang="fr">Suède</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Nunes De Almeida, Francisca" sort="Nunes De Almeida, Francisca" uniqKey="Nunes De Almeida F" first="Francisca" last="Nunes De Almeida">Francisca Nunes De Almeida</name>
<affiliation wicri:level="1">
<nlm:aff id="a10">
<institution>MRC Laboratory for Molecular Cell Biology, UCL</institution>
, Gower St., London WC1E 6BT,
<country>UK</country>
</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Odi, Dusko" sort="Odi, Dusko" uniqKey="Odi D" first="Duško" last="Odi">Duško Odi</name>
<affiliation wicri:level="1">
<nlm:aff id="a1">
<institution>Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University</institution>
, Husargatan 3 (Box 596), SE-751 24 Uppsala,
<country>Sweden</country>
</nlm:aff>
<country xml:lang="fr">Suède</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="a11">
<institution>Center for Technology Transfer and Innovation, Jozef Stefan Institute</institution>
, Jamova cesta 39, SI-1000 Ljubljana,
<country>Slovenia</country>
</nlm:aff>
<country xml:lang="fr">Slovénie</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Hasse, Dirk" sort="Hasse, Dirk" uniqKey="Hasse D" first="Dirk" last="Hasse">Dirk Hasse</name>
<affiliation wicri:level="1">
<nlm:aff id="a1">
<institution>Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University</institution>
, Husargatan 3 (Box 596), SE-751 24 Uppsala,
<country>Sweden</country>
</nlm:aff>
<country xml:lang="fr">Suède</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Carlsson, Gunilla H" sort="Carlsson, Gunilla H" uniqKey="Carlsson G" first="Gunilla H." last="Carlsson">Gunilla H. Carlsson</name>
<affiliation wicri:level="1">
<nlm:aff id="a1">
<institution>Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University</institution>
, Husargatan 3 (Box 596), SE-751 24 Uppsala,
<country>Sweden</country>
</nlm:aff>
<country xml:lang="fr">Suède</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Larsson, Daniel S D" sort="Larsson, Daniel S D" uniqKey="Larsson D" first="Daniel S. D." last="Larsson">Daniel S. D. Larsson</name>
<affiliation wicri:level="1">
<nlm:aff id="a1">
<institution>Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University</institution>
, Husargatan 3 (Box 596), SE-751 24 Uppsala,
<country>Sweden</country>
</nlm:aff>
<country xml:lang="fr">Suède</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Barty, Anton" sort="Barty, Anton" uniqKey="Barty A" first="Anton" last="Barty">Anton Barty</name>
<affiliation wicri:level="1">
<nlm:aff id="a5">
<institution>Center for Free-Electron Laser Science, DESY</institution>
, Notkestrasse 85, 22607 Hamburg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Martin, Andrew V" sort="Martin, Andrew V" uniqKey="Martin A" first="Andrew V." last="Martin">Andrew V. Martin</name>
<affiliation wicri:level="1">
<nlm:aff id="a12">
<institution>ARC Centre of Excellence for Advanced Molecular Imaging, School of Physics, The University of Melbourne</institution>
, Victoria 3010,
<country>Australia</country>
</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Schorb, Sebastian" sort="Schorb, Sebastian" uniqKey="Schorb S" first="Sebastian" last="Schorb">Sebastian Schorb</name>
<affiliation wicri:level="1">
<nlm:aff id="a13">
<institution>Institut für Optik und Atomare Physik, Technische Universität Berlin</institution>
, Hardenbergstrasse 36, 10623 Berlin,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Bostedt, Christoph" sort="Bostedt, Christoph" uniqKey="Bostedt C" first="Christoph" last="Bostedt">Christoph Bostedt</name>
<affiliation wicri:level="1">
<nlm:aff id="a2">
<institution>LCLS, SLAC National Accelerator Laboratory</institution>
, 2575 Sand Hill Road, Menlo Park, California 94025,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Bozek, John D" sort="Bozek, John D" uniqKey="Bozek J" first="John D." last="Bozek">John D. Bozek</name>
<affiliation wicri:level="1">
<nlm:aff id="a14">
<institution>Synchrotron SOLEIL, L’orme des Merisiers roundabout of St Aubin</institution>
, 91190 Saint Aubin,
<country>France</country>
</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Carron, Sebastian" sort="Carron, Sebastian" uniqKey="Carron S" first="Sebastian" last="Carron">Sebastian Carron</name>
<affiliation wicri:level="1">
<nlm:aff id="a2">
<institution>LCLS, SLAC National Accelerator Laboratory</institution>
, 2575 Sand Hill Road, Menlo Park, California 94025,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Ferguson, Ken" sort="Ferguson, Ken" uniqKey="Ferguson K" first="Ken" last="Ferguson">Ken Ferguson</name>
<affiliation wicri:level="1">
<nlm:aff id="a2">
<institution>LCLS, SLAC National Accelerator Laboratory</institution>
, 2575 Sand Hill Road, Menlo Park, California 94025,
<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Rolles, Daniel" sort="Rolles, Daniel" uniqKey="Rolles D" first="Daniel" last="Rolles">Daniel Rolles</name>
<affiliation wicri:level="1">
<nlm:aff id="a15">
<institution>Max Planck Advanced Study Group, Center for Free Electron Laser Science</institution>
, Notkestrasse 85, 22607 Hamburg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="a16">
<institution>Max-Planck-Institut für medizinische Forschung</institution>
, Jahnstr. 29, 69120 Heidelberg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Rudenko, Artem" sort="Rudenko, Artem" uniqKey="Rudenko A" first="Artem" last="Rudenko">Artem Rudenko</name>
<affiliation wicri:level="1">
<nlm:aff id="a15">
<institution>Max Planck Advanced Study Group, Center for Free Electron Laser Science</institution>
, Notkestrasse 85, 22607 Hamburg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="a17">
<institution>Max-Planck-Institut für Kernphysik</institution>
, Saupfercheckweg 1, 69117 Heidelberg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Epp, Sascha W" sort="Epp, Sascha W" uniqKey="Epp S" first="Sascha W." last="Epp">Sascha W. Epp</name>
<affiliation wicri:level="1">
<nlm:aff id="a15">
<institution>Max Planck Advanced Study Group, Center for Free Electron Laser Science</institution>
, Notkestrasse 85, 22607 Hamburg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="a17">
<institution>Max-Planck-Institut für Kernphysik</institution>
, Saupfercheckweg 1, 69117 Heidelberg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Foucar, Lutz" sort="Foucar, Lutz" uniqKey="Foucar L" first="Lutz" last="Foucar">Lutz Foucar</name>
<affiliation wicri:level="1">
<nlm:aff id="a15">
<institution>Max Planck Advanced Study Group, Center for Free Electron Laser Science</institution>
, Notkestrasse 85, 22607 Hamburg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="a16">
<institution>Max-Planck-Institut für medizinische Forschung</institution>
, Jahnstr. 29, 69120 Heidelberg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Rudek, Benedikt" sort="Rudek, Benedikt" uniqKey="Rudek B" first="Benedikt" last="Rudek">Benedikt Rudek</name>
<affiliation wicri:level="1">
<nlm:aff id="a15">
<institution>Max Planck Advanced Study Group, Center for Free Electron Laser Science</institution>
, Notkestrasse 85, 22607 Hamburg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="a17">
<institution>Max-Planck-Institut für Kernphysik</institution>
, Saupfercheckweg 1, 69117 Heidelberg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Erk, Benjamin" sort="Erk, Benjamin" uniqKey="Erk B" first="Benjamin" last="Erk">Benjamin Erk</name>
<affiliation wicri:level="1">
<nlm:aff id="a15">
<institution>Max Planck Advanced Study Group, Center for Free Electron Laser Science</institution>
, Notkestrasse 85, 22607 Hamburg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="a17">
<institution>Max-Planck-Institut für Kernphysik</institution>
, Saupfercheckweg 1, 69117 Heidelberg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Hartmann, Robert" sort="Hartmann, Robert" uniqKey="Hartmann R" first="Robert" last="Hartmann">Robert Hartmann</name>
<affiliation wicri:level="1">
<nlm:aff id="a18">
<institution>PNSensor GmbH</institution>
, Otto-Hahn-Ring 6, 81739 Munich,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Kimmel, Nils" sort="Kimmel, Nils" uniqKey="Kimmel N" first="Nils" last="Kimmel">Nils Kimmel</name>
<affiliation wicri:level="1">
<nlm:aff id="a19">
<institution>Max-Planck-Institut Halbleiterlabor</institution>
, Otto-Hahn-Ring 6, 81739 München,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="a20">
<institution>Max-Planck-Institut für extraterrestrische Physik</institution>
, Giessenbachstrasse, 85741 Garching,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Holl, Peter" sort="Holl, Peter" uniqKey="Holl P" first="Peter" last="Holl">Peter Holl</name>
<affiliation wicri:level="1">
<nlm:aff id="a18">
<institution>PNSensor GmbH</institution>
, Otto-Hahn-Ring 6, 81739 Munich,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Englert, Lars" sort="Englert, Lars" uniqKey="Englert L" first="Lars" last="Englert">Lars Englert</name>
<affiliation wicri:level="1">
<nlm:aff id="a20">
<institution>Max-Planck-Institut für extraterrestrische Physik</institution>
, Giessenbachstrasse, 85741 Garching,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="a21">
<institution>Ultrafast Coherent Dynamics Group, University Oldenburg</institution>
, Carl-von-Ossietzky Strasse 9-11, 26129 Oldenburg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Loh, N Duane" sort="Loh, N Duane" uniqKey="Loh N" first="N. Duane" last="Loh">N. Duane Loh</name>
<affiliation wicri:level="1">
<nlm:aff id="a22">
<institution>Centre for BioImaging Sciences, National University of Singapore</institution>
, 14 Science Drive 4 Blk S1 A, Singapore 117546,
<country>Singapore</country>
</nlm:aff>
<country xml:lang="fr">Singapour</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Chapman, Henry N" sort="Chapman, Henry N" uniqKey="Chapman H" first="Henry N." last="Chapman">Henry N. Chapman</name>
<affiliation wicri:level="1">
<nlm:aff id="a5">
<institution>Center for Free-Electron Laser Science, DESY</institution>
, Notkestrasse 85, 22607 Hamburg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="a23">
<institution>University of Hamburg</institution>
, Notkestrasse 85, 22607 Hamburg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Andersson, Inger" sort="Andersson, Inger" uniqKey="Andersson I" first="Inger" last="Andersson">Inger Andersson</name>
<affiliation wicri:level="1">
<nlm:aff id="a1">
<institution>Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University</institution>
, Husargatan 3 (Box 596), SE-751 24 Uppsala,
<country>Sweden</country>
</nlm:aff>
<country xml:lang="fr">Suède</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Hajdu, Janos" sort="Hajdu, Janos" uniqKey="Hajdu J" first="Janos" last="Hajdu">Janos Hajdu</name>
<affiliation wicri:level="1">
<nlm:aff id="a1">
<institution>Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University</institution>
, Husargatan 3 (Box 596), SE-751 24 Uppsala,
<country>Sweden</country>
</nlm:aff>
<country xml:lang="fr">Suède</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="a3">
<institution>European XFEL</institution>
, Albert-Einstein-Ring 19, 22761 Hamburg,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Ekeberg, Tomas" sort="Ekeberg, Tomas" uniqKey="Ekeberg T" first="Tomas" last="Ekeberg">Tomas Ekeberg</name>
<affiliation wicri:level="1">
<nlm:aff id="a1">
<institution>Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University</institution>
, Husargatan 3 (Box 596), SE-751 24 Uppsala,
<country>Sweden</country>
</nlm:aff>
<country xml:lang="fr">Suède</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
</analytic>
<series>
<title level="j">Scientific Data</title>
<idno type="eISSN">2052-4463</idno>
<imprint>
<date when="2016">2016</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass></textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">
<p>Structural studies on living cells by conventional methods are limited to low resolution because radiation damage kills cells long before the necessary dose for high resolution can be delivered. X-ray free-electron lasers circumvent this problem by outrunning key damage processes with an ultra-short and extremely bright coherent X-ray pulse. Diffraction-before-destruction experiments provide high-resolution data from cells that are alive when the femtosecond X-ray pulse traverses the sample. This paper presents two data sets from micron-sized cyanobacteria obtained at the Linac Coherent Light Source, containing a total of 199,000 diffraction patterns. Utilizing this type of diffraction data will require the development of new analysis methods and algorithms for studying structure and structural variability in large populations of cells and to create abstract models. Such studies will allow us to understand living cells and populations of cells in new ways. New X-ray lasers, like the European XFEL, will produce billions of pulses per day, and could open new areas in structural sciences.</p>
</div>
</front>
<back>
<div1 type="bibliography">
<listBibl>
<biblStruct>
<analytic>
<author>
<name sortKey="Van Der Schot, G" uniqKey="Van Der Schot G">G. van der Schot</name>
</author>
</analytic>
</biblStruct>
</listBibl>
</div1>
</back>
</TEI>
<pmc article-type="data-paper">
<pmc-dir>properties open_access</pmc-dir>
<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">Sci Data</journal-id>
<journal-id journal-id-type="iso-abbrev">Sci Data</journal-id>
<journal-title-group>
<journal-title>Scientific Data</journal-title>
</journal-title-group>
<issn pub-type="epub">2052-4463</issn>
<publisher>
<publisher-name>Nature Publishing Group</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="pmid">27479514</article-id>
<article-id pub-id-type="pmc">4968219</article-id>
<article-id pub-id-type="pii">sdata201658</article-id>
<article-id pub-id-type="doi">10.1038/sdata.2016.58</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Data Descriptor</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>Open data set of live cyanobacterial cells imaged using an X-ray laser</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>van der Schot</surname>
<given-names>Gijs</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Svenda</surname>
<given-names>Martin</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Maia</surname>
<given-names>Filipe R.N.C.</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
<contrib-id contrib-id-type="orcid">http://orcid.org/0000-0002-2141-438X</contrib-id>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Hantke</surname>
<given-names>Max F.</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>DePonte</surname>
<given-names>Daniel P.</given-names>
</name>
<xref ref-type="aff" rid="a2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Seibert</surname>
<given-names>M. Marvin</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Aquila</surname>
<given-names>Andrew</given-names>
</name>
<xref ref-type="aff" rid="a2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Schulz</surname>
<given-names>Joachim</given-names>
</name>
<xref ref-type="aff" rid="a3">3</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Kirian</surname>
<given-names>Richard A.</given-names>
</name>
<xref ref-type="aff" rid="a4">4</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Liang</surname>
<given-names>Mengning</given-names>
</name>
<xref ref-type="aff" rid="a2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Stellato</surname>
<given-names>Francesco</given-names>
</name>
<xref ref-type="aff" rid="a5">5</xref>
<xref ref-type="aff" rid="a6">6</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Bari</surname>
<given-names>Sadia</given-names>
</name>
<xref ref-type="aff" rid="a3">3</xref>
<xref ref-type="aff" rid="a7">7</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Iwan</surname>
<given-names>Bianca</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Andreasson</surname>
<given-names>Jakob</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
<xref ref-type="aff" rid="a8">8</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Timneanu</surname>
<given-names>Nicusor</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
<xref ref-type="aff" rid="a9">9</xref>
<contrib-id contrib-id-type="orcid">http://orcid.org/0000-0001-7328-0400</contrib-id>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Bielecki</surname>
<given-names>Johan</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Westphal</surname>
<given-names>Daniel</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Nunes de Almeida</surname>
<given-names>Francisca</given-names>
</name>
<xref ref-type="aff" rid="a10">10</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Odić</surname>
<given-names>Duško</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
<xref ref-type="aff" rid="a11">11</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Hasse</surname>
<given-names>Dirk</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Carlsson</surname>
<given-names>Gunilla H.</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Larsson</surname>
<given-names>Daniel S.D.</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Barty</surname>
<given-names>Anton</given-names>
</name>
<xref ref-type="aff" rid="a5">5</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Martin</surname>
<given-names>Andrew V.</given-names>
</name>
<xref ref-type="aff" rid="a12">12</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Schorb</surname>
<given-names>Sebastian</given-names>
</name>
<xref ref-type="aff" rid="a13">13</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Bostedt</surname>
<given-names>Christoph</given-names>
</name>
<xref ref-type="aff" rid="a2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Bozek</surname>
<given-names>John D.</given-names>
</name>
<xref ref-type="aff" rid="a14">14</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Carron</surname>
<given-names>Sebastian</given-names>
</name>
<xref ref-type="aff" rid="a2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Ferguson</surname>
<given-names>Ken</given-names>
</name>
<xref ref-type="aff" rid="a2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Rolles</surname>
<given-names>Daniel</given-names>
</name>
<xref ref-type="aff" rid="a15">15</xref>
<xref ref-type="aff" rid="a16">16</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Rudenko</surname>
<given-names>Artem</given-names>
</name>
<xref ref-type="aff" rid="a15">15</xref>
<xref ref-type="aff" rid="a17">17</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Epp</surname>
<given-names>Sascha W.</given-names>
</name>
<xref ref-type="aff" rid="a15">15</xref>
<xref ref-type="aff" rid="a17">17</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Foucar</surname>
<given-names>Lutz</given-names>
</name>
<xref ref-type="aff" rid="a15">15</xref>
<xref ref-type="aff" rid="a16">16</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Rudek</surname>
<given-names>Benedikt</given-names>
</name>
<xref ref-type="aff" rid="a15">15</xref>
<xref ref-type="aff" rid="a17">17</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Erk</surname>
<given-names>Benjamin</given-names>
</name>
<xref ref-type="aff" rid="a15">15</xref>
<xref ref-type="aff" rid="a17">17</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Hartmann</surname>
<given-names>Robert</given-names>
</name>
<xref ref-type="aff" rid="a18">18</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Kimmel</surname>
<given-names>Nils</given-names>
</name>
<xref ref-type="aff" rid="a19">19</xref>
<xref ref-type="aff" rid="a20">20</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Holl</surname>
<given-names>Peter</given-names>
</name>
<xref ref-type="aff" rid="a18">18</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Englert</surname>
<given-names>Lars</given-names>
</name>
<xref ref-type="aff" rid="a20">20</xref>
<xref ref-type="aff" rid="a21">21</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Loh</surname>
<given-names>N. Duane</given-names>
</name>
<xref ref-type="aff" rid="a22">22</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Chapman</surname>
<given-names>Henry N.</given-names>
</name>
<xref ref-type="aff" rid="a5">5</xref>
<xref ref-type="aff" rid="a23">23</xref>
<contrib-id contrib-id-type="orcid">http://orcid.org/0000-0002-4655-1743</contrib-id>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Andersson</surname>
<given-names>Inger</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Hajdu</surname>
<given-names>Janos</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
<xref ref-type="aff" rid="a3">3</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Ekeberg</surname>
<given-names>Tomas</given-names>
</name>
<xref ref-type="corresp" rid="c1">a</xref>
<xref ref-type="aff" rid="a1">1</xref>
</contrib>
<aff id="a1">
<label>1</label>
<institution>Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University</institution>
, Husargatan 3 (Box 596), SE-751 24 Uppsala,
<country>Sweden</country>
</aff>
<aff id="a2">
<label>2</label>
<institution>LCLS, SLAC National Accelerator Laboratory</institution>
, 2575 Sand Hill Road, Menlo Park, California 94025,
<country>USA</country>
</aff>
<aff id="a3">
<label>3</label>
<institution>European XFEL</institution>
, Albert-Einstein-Ring 19, 22761 Hamburg,
<country>Germany</country>
</aff>
<aff id="a4">
<label>4</label>
<institution>Arizona State University, Physics Department</institution>
, PO Box 871504, Tempe, Arizona 85287-1504,
<country>USA</country>
</aff>
<aff id="a5">
<label>5</label>
<institution>Center for Free-Electron Laser Science, DESY</institution>
, Notkestrasse 85, 22607 Hamburg,
<country>Germany</country>
</aff>
<aff id="a6">
<label>6</label>
<institution>I.N.F.N. and Physics Department, University of Rome ‘Tor Vergata’</institution>
, Via della Ricerca Scientifica 1, 00133 Rome,
<country>Italy</country>
</aff>
<aff id="a7">
<label>7</label>
<institution>Deutsches Elektronen-Synchrotron DESY</institution>
, Notkestrasse 85, 22607 Hamburg,
<country>Germany</country>
</aff>
<aff id="a8">
<label>8</label>
<institution>ELI beamlines, Institute of Physics, Academy of Sciences of the Czech Republic</institution>
, Na Slovance 2, 18221 Prague,
<country>Czech Republic</country>
</aff>
<aff id="a9">
<label>9</label>
<institution>Department of Physics and Astronomy, Uppsala University</institution>
, Lägerhyddsvägen 1, Box 516, SE-751 20 Uppsala,
<country>Sweden</country>
</aff>
<aff id="a10">
<label>10</label>
<institution>MRC Laboratory for Molecular Cell Biology, UCL</institution>
, Gower St., London WC1E 6BT,
<country>UK</country>
</aff>
<aff id="a11">
<label>11</label>
<institution>Center for Technology Transfer and Innovation, Jozef Stefan Institute</institution>
, Jamova cesta 39, SI-1000 Ljubljana,
<country>Slovenia</country>
</aff>
<aff id="a12">
<label>12</label>
<institution>ARC Centre of Excellence for Advanced Molecular Imaging, School of Physics, The University of Melbourne</institution>
, Victoria 3010,
<country>Australia</country>
</aff>
<aff id="a13">
<label>13</label>
<institution>Institut für Optik und Atomare Physik, Technische Universität Berlin</institution>
, Hardenbergstrasse 36, 10623 Berlin,
<country>Germany</country>
</aff>
<aff id="a14">
<label>14</label>
<institution>Synchrotron SOLEIL, L’orme des Merisiers roundabout of St Aubin</institution>
, 91190 Saint Aubin,
<country>France</country>
</aff>
<aff id="a15">
<label>15</label>
<institution>Max Planck Advanced Study Group, Center for Free Electron Laser Science</institution>
, Notkestrasse 85, 22607 Hamburg,
<country>Germany</country>
</aff>
<aff id="a16">
<label>16</label>
<institution>Max-Planck-Institut für medizinische Forschung</institution>
, Jahnstr. 29, 69120 Heidelberg,
<country>Germany</country>
</aff>
<aff id="a17">
<label>17</label>
<institution>Max-Planck-Institut für Kernphysik</institution>
, Saupfercheckweg 1, 69117 Heidelberg,
<country>Germany</country>
</aff>
<aff id="a18">
<label>18</label>
<institution>PNSensor GmbH</institution>
, Otto-Hahn-Ring 6, 81739 Munich,
<country>Germany</country>
</aff>
<aff id="a19">
<label>19</label>
<institution>Max-Planck-Institut Halbleiterlabor</institution>
, Otto-Hahn-Ring 6, 81739 München,
<country>Germany</country>
</aff>
<aff id="a20">
<label>20</label>
<institution>Max-Planck-Institut für extraterrestrische Physik</institution>
, Giessenbachstrasse, 85741 Garching,
<country>Germany</country>
</aff>
<aff id="a21">
<label>21</label>
<institution>Ultrafast Coherent Dynamics Group, University Oldenburg</institution>
, Carl-von-Ossietzky Strasse 9-11, 26129 Oldenburg,
<country>Germany</country>
</aff>
<aff id="a22">
<label>22</label>
<institution>Centre for BioImaging Sciences, National University of Singapore</institution>
, 14 Science Drive 4 Blk S1 A, Singapore 117546,
<country>Singapore</country>
</aff>
<aff id="a23">
<label>23</label>
<institution>University of Hamburg</institution>
, Notkestrasse 85, 22607 Hamburg,
<country>Germany</country>
</aff>
</contrib-group>
<author-notes>
<corresp id="c1">
<label>a</label>
T.K. (email:
<email>ekeberg@xray.bmc.uu.se</email>
).</corresp>
<fn id="con">
<label></label>
<p>J.H., F.R.N.C.M. and T.E. developed the imaging concept and conceived the experiment. G.vd.S, F.R.N.C.M., T.E., A.B., N.D.L., A.M., and D.L. developed ideas and software to process the diffraction data. M.S., D.H., G.C., F.N.A. and D.O. prepared and characterised the cells for the study. J.H., B.I., D.P.D., M.S., J.A., J.B., M.M.S., S.B. and D.W. developed and operated the sample injector. J.D.B., C.B., S.C., K.F., S.S., N.T., M.L., F.S., M.S. and M.M.S. operated the beam line at the LCLS R.H. and N.K. operated the pnCCD detectors. M.H., F.R.N.C.M., T.E., D.L., G.vd.S, A.B., J.A., M.M.S., H.N.C., M.S., M.L., F.S., D.R., I.A., A.R., S.E. and J.H. characterized the imaging apparatus and carried out the experiment. G.vd.S, F.R.N.C.M. and T.E. processed the data. G.vd.S, T.E., F.R.N.C.M., and J.H. analysed the results. G.vd.S, J.H. and T.E. wrote the manuscript with input from others.</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>01</day>
<month>08</month>
<year>2016</year>
</pub-date>
<pub-date pub-type="collection">
<year>2016</year>
</pub-date>
<volume>3</volume>
<elocation-id>160058</elocation-id>
<history>
<date date-type="received">
<day>15</day>
<month>02</month>
<year>2016</year>
</date>
<date date-type="accepted">
<day>18</day>
<month>05</month>
<year>2016</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright © 2016, The Author(s)</copyright-statement>
<copyright-year>2016</copyright-year>
<copyright-holder>The Author(s)</copyright-holder>
<license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/4.0">
<pmc-comment>author-paid</pmc-comment>
<license-p>This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit
<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0">http://creativecommons.org/licenses/by/4.0</ext-link>
Metadata associated with this Data Descriptor is available at
<ext-link ext-link-type="uri" xlink:href="http://www.nature.com/sdata/">http://www.nature.com/sdata/</ext-link>
and is released under the CC0 waiver to maximize reuse. </license-p>
</license>
</permissions>
<related-article ext-link-type="doi" related-article-type="data-paper-referrer" id="d33e20" xlink:href="10.1038/ncomms6704"></related-article>
<abstract>
<p>Structural studies on living cells by conventional methods are limited to low resolution because radiation damage kills cells long before the necessary dose for high resolution can be delivered. X-ray free-electron lasers circumvent this problem by outrunning key damage processes with an ultra-short and extremely bright coherent X-ray pulse. Diffraction-before-destruction experiments provide high-resolution data from cells that are alive when the femtosecond X-ray pulse traverses the sample. This paper presents two data sets from micron-sized cyanobacteria obtained at the Linac Coherent Light Source, containing a total of 199,000 diffraction patterns. Utilizing this type of diffraction data will require the development of new analysis methods and algorithms for studying structure and structural variability in large populations of cells and to create abstract models. Such studies will allow us to understand living cells and populations of cells in new ways. New X-ray lasers, like the European XFEL, will produce billions of pulses per day, and could open new areas in structural sciences.</p>
</abstract>
<kwd-group kwd-group-type="npg.subject">
<title>Subject terms</title>
<kwd>Molecular biophysics</kwd>
<kwd>X-rays</kwd>
<kwd>Imaging</kwd>
</kwd-group>
</article-meta>
</front>
<floats-group>
<fig id="f1">
<label>Figure 1</label>
<caption>
<title>The experimental arrangement.</title>
<p>
<italic>C. gracile</italic>
and
<italic>S. elongatus</italic>
cells were injected into the pulse train of the LCLS
<sup>
<xref ref-type="bibr" rid="b18">18</xref>
</sup>
at 10
<sup>−6</sup>
mbar pressure, using an aerosol sample injector built in Uppsala. The cells are in different stages of division, and arrive in random order and are imaged in random orientations. The diffracted signal is recorded on two detector pairs (front detector and back detector). The direct beam passes through an opening between the two detector halves of each detector pair
<sup>16</sup>
. The opening or gap between the front detector halves is 55.6 mm for experiment 1 (
<italic>C. gracile</italic>
cells), and 22.8 mm for experiment 2 (
<italic>S. elongatus</italic>
cells). The gap between the back detector halves is closed for both experiments.</p>
</caption>
<graphic xlink:href="sdata201658-f1"></graphic>
</fig>
<fig id="f2">
<label>Figure 2</label>
<caption>
<title>Compilation of representative sampling of diffraction patterns from both experiments.</title>
<p>Ten representative diffraction patterns from each data record were selected. Both data sets contain diffraction patterns from single living cells, multiple cells, large clusters of cells, as well as from contaminants such as spherical droplets, or virus-like particles (possibly being an earlier injected sample). All patterns are normalized individually; dark blue is no scattered signal, dark red is most intense signal in the pattern.</p>
</caption>
<graphic xlink:href="sdata201658-f2"></graphic>
</fig>
<table-wrap position="float" id="t1">
<label>Table 1</label>
<caption>
<title>Experimental setup.</title>
</caption>
<table frame="hsides" rules="groups" border="1">
<colgroup>
<col align="left"></col>
<col align="left"></col>
<col align="left"></col>
</colgroup>
<thead valign="bottom">
<tr>
<th align="left" valign="top" charoff="50">
<bold>Sample</bold>
</th>
<th align="left" valign="top" charoff="50">
<bold>Experiment 1</bold>
</th>
<th align="left" valign="top" charoff="50">
<bold>Experiment 2</bold>
</th>
</tr>
</thead>
<tfoot valign="top">
<tr>
<th align="left" valign="top" charoff="50">This table describes the experimental parameters used in experiment 1 and experiment 2. The sample, the source parameters, and the detector properties.</th>
<td> </td>
<td> </td>
</tr>
</tfoot>
<tbody valign="top">
<tr>
<td align="left" valign="top" charoff="50">Cell type</td>
<td align="left" valign="top" charoff="50">
<italic>Cyanobium gracile</italic>
</td>
<td align="left" valign="top" charoff="50">
<italic>Synechococcus elongatus</italic>
</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50">Source Parameters
<hr></hr>
</td>
<td> </td>
<td> </td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> End station</td>
<td align="left" valign="top" charoff="50">AMO</td>
<td align="left" valign="top" charoff="50">AMO</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Repetition rate</td>
<td align="left" valign="top" charoff="50">120 Hz</td>
<td align="left" valign="top" charoff="50">120 Hz</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Pulse duration</td>
<td align="left" valign="top" charoff="50">~70 fs</td>
<td align="left" valign="top" charoff="50">~70 fs</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Photons per pulse</td>
<td align="left" valign="top" charoff="50">~1.5×10
<sup>13</sup>
(1.26 mJ)</td>
<td align="left" valign="top" charoff="50">1.2×10
<sup>13</sup>
(2.18 mJ)</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Optical efficiency</td>
<td align="left" valign="top" charoff="50">15%</td>
<td align="left" valign="top" charoff="50">15%</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Bandwidth</td>
<td align="left" valign="top" charoff="50">0.5%</td>
<td align="left" valign="top" charoff="50">0.5%</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Photon energy</td>
<td align="left" valign="top" charoff="50">517 eV (2.4 nm)</td>
<td align="left" valign="top" charoff="50">1,100 eV (1.13 nm)</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Focal size</td>
<td align="left" valign="top" charoff="50">3 μm×7 μm</td>
<td align="left" valign="top" charoff="50">3 μm×7 μm</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Flux in the focus</td>
<td align="left" valign="top" charoff="50">1.1×10
<sup>11</sup>
photons/μm
<sup>2</sup>
</td>
<td align="left" valign="top" charoff="50">8.6×10
<sup>10</sup>
photons/μm
<sup>2</sup>
</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50">Detector Properties
<hr></hr>
</td>
<td> </td>
<td> </td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Distance from interaction point (front detector)</td>
<td align="left" valign="top" charoff="50">220 mm</td>
<td align="left" valign="top" charoff="50">220 mm</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Gap size (front detector)</td>
<td align="left" valign="top" charoff="50">55.6 mm</td>
<td align="left" valign="top" charoff="50">22.8 mm</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Full-well capacity (front detector)</td>
<td align="left" valign="top" charoff="50">3,500 photons</td>
<td align="left" valign="top" charoff="50">1,600 photons</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Distance from interaction point (back detector)</td>
<td align="left" valign="top" charoff="50">741 mm</td>
<td align="left" valign="top" charoff="50">741 mm</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Gap size (back detector)</td>
<td align="left" valign="top" charoff="50">0 mm</td>
<td align="left" valign="top" charoff="50">0 mm</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Full-well capacity (back detector)</td>
<td align="left" valign="top" charoff="50">3,500 photons</td>
<td align="left" valign="top" charoff="50">1,600 photons</td>
</tr>
</tbody>
</table>
</table-wrap>
<table-wrap position="float" id="t2">
<label>Table 2</label>
<caption>
<title>Deposited data and configuration files.</title>
</caption>
<table frame="hsides" rules="groups" border="1">
<colgroup>
<col align="left"></col>
<col align="left"></col>
<col align="left"></col>
</colgroup>
<thead valign="bottom">
<tr>
<th align="left" valign="top" charoff="50">
<bold>Data type</bold>
</th>
<th align="left" valign="top" charoff="50">
<bold>Example filename</bold>
</th>
<th align="center" valign="top" charoff="50">
<bold>File format</bold>
</th>
</tr>
</thead>
<tfoot valign="top">
<tr>
<th align="left" valign="top" charoff="50">This table describes the files deposited on the CXIDB under accession number ID-37. ID-37 consists of two data records, from two experiments. Both records contain all these files.</th>
<td> </td>
<td> </td>
</tr>
</tfoot>
<tbody valign="top">
<tr>
<td align="left" valign="top" charoff="50">Experimental Data
<hr></hr>
</td>
<td> </td>
<td> </td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Diffraction data (all exposures)</td>
<td align="left" valign="top" charoff="50">e54-r0207-s00-c00.xtc</td>
<td align="left" valign="top" charoff="50">XTC</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Preprocessed data (only hits)</td>
<td align="left" valign="top" charoff="50">preprocessed_hits_exp1-r0207.cxi</td>
<td align="left" valign="top" charoff="50">CXI</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Calibration data (dark run)</td>
<td align="left" valign="top" charoff="50">calibration_data_back_detector_exp1.h5</td>
<td align="left" valign="top" charoff="50">Hdf5</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50">Preprocessing
<hr></hr>
</td>
<td> </td>
<td> </td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Cheetah initialization file (generate calibration data)</td>
<td align="left" valign="top" charoff="50">cheetah_calibration_exp1.ini</td>
<td align="left" valign="top" charoff="50">Text</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Cheetah configuration file (generate calibration data)</td>
<td align="left" valign="top" charoff="50">psana_calibration_exp1.cfg</td>
<td align="left" valign="top" charoff="50">Text</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Calibration data (
<italic>back</italic>
detector)</td>
<td align="left" valign="top" charoff="50">calibration_data_back_detector_exp1.h5</td>
<td align="left" valign="top" charoff="50">Hdf5</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Calibration data (
<italic>front</italic>
detector)</td>
<td align="left" valign="top" charoff="50">calibration_data_front_detector_exp1.h5</td>
<td align="left" valign="top" charoff="50">Hdf5</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Cheetah initialization file (preprocessing)</td>
<td align="left" valign="top" charoff="50">cheetah.ini</td>
<td align="left" valign="top" charoff="50">Text</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Cheetah configuration file (preprocessing)</td>
<td align="left" valign="top" charoff="50">psana.cfg</td>
<td align="left" valign="top" charoff="50">Text</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Bad pixel map (
<italic>back</italic>
detector)</td>
<td align="left" valign="top" charoff="50">badpixelmap_back_detector_exp1.h5</td>
<td align="left" valign="top" charoff="50">Hdf5</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Bad pixel map (
<italic>front</italic>
detector)</td>
<td align="left" valign="top" charoff="50">badpixelmap_front_detector_exp1.h5</td>
<td align="left" valign="top" charoff="50">Hdf5</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Experimental geometry (
<italic>back</italic>
detector)</td>
<td align="left" valign="top" charoff="50">geometry_back_detector_exp1.h5</td>
<td align="left" valign="top" charoff="50">Hdf5</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"> Experimental geometry (
<italic>front</italic>
detector)</td>
<td align="left" valign="top" charoff="50">geometry_front_detector_exp1.h5</td>
<td align="left" valign="top" charoff="50">Hdf5</td>
</tr>
</tbody>
</table>
</table-wrap>
<table-wrap position="float" id="t3">
<label>Table 3</label>
<caption>
<title>Description of the experimental data sets.</title>
</caption>
<table frame="hsides" rules="groups" border="1">
<colgroup>
<col align="left"></col>
<col align="left"></col>
<col align="left"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
</colgroup>
<thead valign="bottom">
<tr>
<th align="left" valign="top" charoff="50">
<bold>Records</bold>
</th>
<th align="left" valign="top" charoff="50">
<bold>Cell species</bold>
</th>
<th align="left" valign="top" charoff="50">
<bold>Data Type</bold>
</th>
<th align="center" valign="top" charoff="50">
<bold>Run number</bold>
</th>
<th align="center" valign="top" charoff="50">
<bold>Size (# exposures)</bold>
</th>
<th align="center" valign="top" charoff="50">
<bold>Hit ratio</bold>
</th>
<th align="center" valign="top" charoff="50">
<bold>Duration run</bold>
</th>
</tr>
</thead>
<tfoot valign="top">
<tr>
<th align="left" valign="top" charoff="50">This table describes the experimental data of the two data records; the species of cyanobacteria imaged, the data type, the run number of the data sets, the size of the data set, the hit ratio, and the duration of the run.</th>
<td> </td>
<td> </td>
<td> </td>
<td> </td>
<td> </td>
<td> </td>
</tr>
</tfoot>
<tbody valign="top">
<tr>
<td align="left" valign="top" charoff="50">Data Record 1</td>
<td align="left" valign="top" charoff="50">No sample</td>
<td align="left" valign="top" charoff="50">Calibration data</td>
<td align="center" valign="top" charoff="50">r0206</td>
<td align="center" valign="top" charoff="50">885</td>
<td align="center" valign="top" charoff="50">N.A.</td>
<td align="center" valign="top" charoff="50">1 min</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"></td>
<td align="left" valign="top" charoff="50">
<italic>C. gracile</italic>
</td>
<td align="left" valign="top" charoff="50">Diffraction data</td>
<td align="center" valign="top" charoff="50">r0207</td>
<td align="center" valign="top" charoff="50">195,491</td>
<td align="center" valign="top" charoff="50">42%</td>
<td align="center" valign="top" charoff="50">27 min</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"></td>
<td align="left" valign="top" charoff="50">
<italic>C. gracile</italic>
</td>
<td align="left" valign="top" charoff="50">Diffraction data</td>
<td align="center" valign="top" charoff="50">r0210</td>
<td align="center" valign="top" charoff="50">67,685</td>
<td align="center" valign="top" charoff="50">39%</td>
<td align="center" valign="top" charoff="50">9 min</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"></td>
<td align="left" valign="top" charoff="50">
<italic>C. gracile</italic>
</td>
<td align="left" valign="top" charoff="50">Diffraction data</td>
<td align="center" valign="top" charoff="50">r0212</td>
<td align="center" valign="top" charoff="50">4,222</td>
<td align="center" valign="top" charoff="50">46%</td>
<td align="center" valign="top" charoff="50">1 min</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"></td>
<td align="left" valign="top" charoff="50">
<italic>C. gracile</italic>
</td>
<td align="left" valign="top" charoff="50">Diffraction data</td>
<td align="center" valign="top" charoff="50">r0214</td>
<td align="center" valign="top" charoff="50">206,049</td>
<td align="center" valign="top" charoff="50">40%</td>
<td align="center" valign="top" charoff="50">29 min</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50">Data Record 2</td>
<td align="left" valign="top" charoff="50">No Sample</td>
<td align="left" valign="top" charoff="50">Calibration data</td>
<td align="center" valign="top" charoff="50">r0140</td>
<td align="center" valign="top" charoff="50">2,597</td>
<td align="center" valign="top" charoff="50">N.A.</td>
<td align="center" valign="top" charoff="50">2 min</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50"></td>
<td align="left" valign="top" charoff="50">
<italic>S. elongatus</italic>
</td>
<td align="left" valign="top" charoff="50">Diffraction data</td>
<td align="center" valign="top" charoff="50">r0142</td>
<td align="center" valign="top" charoff="50">66,442</td>
<td align="center" valign="top" charoff="50">10%</td>
<td align="center" valign="top" charoff="50">9 min</td>
</tr>
</tbody>
</table>
</table-wrap>
<table-wrap position="float" id="t4">
<label>Table 4</label>
<caption>
<title>Examples of data stored in the cxi format.</title>
</caption>
<table frame="hsides" rules="groups" border="1">
<colgroup>
<col align="left"></col>
<col align="left"></col>
</colgroup>
<thead valign="bottom">
<tr>
<th align="left" valign="top" charoff="50">
<bold>Description</bold>
</th>
<th align="left" valign="top" charoff="50">
<bold>Location descriptor</bold>
</th>
</tr>
</thead>
<tfoot valign="top">
<tr>
<th align="left" valign="top" charoff="50">The examples in this table summarize the structure of the cxi files deposited under ID-37. There are three main groups in the cxi format:
<italic>LCLS</italic>
,
<italic>Cheetah</italic>
, and
<italic>entry_1</italic>
.
<italic>LCLS</italic>
contains various experimental parameters, such as the photon energy for each exposure (photon_energy_eV).
<italic>Cheetah</italic>
contains cheetah-calculated variables, for example the number of lit pixels (peakNpix).
<italic>Entry_1</italic>
contains preprocessed front and back detector readouts. It might be useful to use the number of lit pixels to sort your data for instance, or perhaps some of the experimental parameters could be useful for as sort as well. For a detailed description of the data format see
<xref ref-type="bibr" rid="b22">ref.22</xref>
.</th>
<td> </td>
</tr>
</tfoot>
<tbody valign="top">
<tr>
<td align="left" valign="top" charoff="50">Preprocessed back detector data of hits</td>
<td align="left" valign="top" charoff="50">/entry_1/image_1/data</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50">Preprocessed front detector data of hits</td>
<td align="left" valign="top" charoff="50">/entry_1/image_2/data</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50">Photon energy of hits</td>
<td align="left" valign="top" charoff="50">/LCLS/photon_energy_eV</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50">Number of lit pixels in hits</td>
<td align="left" valign="top" charoff="50">/cheetah/event_data/peakNpix</td>
</tr>
</tbody>
</table>
</table-wrap>
</floats-group>
</pmc>
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