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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Integrative Analysis of Immunological Data to Explore Chronic Immune T-Cell Activation in Successfully Treated HIV Patients</title><author><name sortKey="Picat, Marie Quitterie" sort="Picat, Marie Quitterie" uniqKey="Picat M" first="Marie-Quitterie" last="Picat">Marie-Quitterie Picat</name><affiliation><nlm:aff id="aff001"><addr-line>Centre INSERM U1219 Bordeaux Population Health, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff002"><addr-line>Univ. Bordeaux, ISPED, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff003"><addr-line>Service d’Information Médicale, USMR, CHU de Bordeaux - Pôle de Santé Publique, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff004"><addr-line>INRIA, Team SISTM, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff005"><addr-line>Vaccine Research Institute-VRI, Hôpital Henri Mondor, Créteil, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="Pellegrin, Isabelle" sort="Pellegrin, Isabelle" uniqKey="Pellegrin I" first="Isabelle" last="Pellegrin">Isabelle Pellegrin</name><affiliation><nlm:aff id="aff006"><addr-line>Laboratoire d’Immunologie-Immunogénétique, Pôle de Biologie, CHU Bordeaux, Bordeaux, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="Bitard, Juliette" sort="Bitard, Juliette" uniqKey="Bitard J" first="Juliette" last="Bitard">Juliette Bitard</name><affiliation><nlm:aff id="aff006"><addr-line>Laboratoire d’Immunologie-Immunogénétique, Pôle de Biologie, CHU Bordeaux, Bordeaux, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="Wittkop, Linda" sort="Wittkop, Linda" uniqKey="Wittkop L" first="Linda" last="Wittkop">Linda Wittkop</name><affiliation><nlm:aff id="aff001"><addr-line>Centre INSERM U1219 Bordeaux Population Health, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff002"><addr-line>Univ. Bordeaux, ISPED, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff003"><addr-line>Service d’Information Médicale, USMR, CHU de Bordeaux - Pôle de Santé Publique, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff004"><addr-line>INRIA, Team SISTM, Bordeaux, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="Proust Lima, Cecile" sort="Proust Lima, Cecile" uniqKey="Proust Lima C" first="Cécile" last="Proust-Lima">Cécile Proust-Lima</name><affiliation><nlm:aff id="aff001"><addr-line>Centre INSERM U1219 Bordeaux Population Health, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff002"><addr-line>Univ. Bordeaux, ISPED, Bordeaux, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="Liquet, Benoit" sort="Liquet, Benoit" uniqKey="Liquet B" first="Benoît" last="Liquet">Benoît Liquet</name><affiliation><nlm:aff id="aff007"><addr-line>Laboratoire de Mathématiques et de leurs Applications, Université de Pau et des Pays de l’Adour, UMR CNRS 5142, Pau, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff008"><addr-line>ARC Centre of Excellence for Mathematical and Statistical Frontiers, Queensland University of Technology (QUT), Brisbane, Australia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Moreau, Jean Francois" sort="Moreau, Jean Francois" uniqKey="Moreau J" first="Jean-François" last="Moreau">Jean-François Moreau</name><affiliation><nlm:aff id="aff006"><addr-line>Laboratoire d’Immunologie-Immunogénétique, Pôle de Biologie, CHU Bordeaux, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff009"><addr-line>Univ. Bordeaux, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff010"><addr-line>CNRS, UMR 5164, Bordeaux, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="Bonnet, Fabrice" sort="Bonnet, Fabrice" uniqKey="Bonnet F" first="Fabrice" last="Bonnet">Fabrice Bonnet</name><affiliation><nlm:aff id="aff001"><addr-line>Centre INSERM U1219 Bordeaux Population Health, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff009"><addr-line>Univ. Bordeaux, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff011"><addr-line>Service de Médecine Interne et maladies Infectieuses, CHU de Bordeaux, Bordeaux, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="Blanco, Patrick" sort="Blanco, Patrick" uniqKey="Blanco P" first="Patrick" last="Blanco">Patrick Blanco</name><affiliation><nlm:aff id="aff006"><addr-line>Laboratoire d’Immunologie-Immunogénétique, Pôle de Biologie, CHU Bordeaux, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff009"><addr-line>Univ. Bordeaux, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff010"><addr-line>CNRS, UMR 5164, Bordeaux, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="Thiebaut, Rodolphe" sort="Thiebaut, Rodolphe" uniqKey="Thiebaut R" first="Rodolphe" last="Thiébaut">Rodolphe Thiébaut</name><affiliation><nlm:aff id="aff001"><addr-line>Centre INSERM U1219 Bordeaux Population Health, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff002"><addr-line>Univ. Bordeaux, ISPED, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff003"><addr-line>Service d’Information Médicale, USMR, CHU de Bordeaux - Pôle de Santé Publique, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff004"><addr-line>INRIA, Team SISTM, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff005"><addr-line>Vaccine Research Institute-VRI, Hôpital Henri Mondor, Créteil, France</addr-line></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">28046052</idno><idno type="pmc">5207686</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5207686</idno><idno type="RBID">PMC:5207686</idno><idno type="doi">10.1371/journal.pone.0169164</idno><date when="2017">2017</date><idno type="wicri:Area/Pmc/Corpus">002962</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">002962</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Integrative Analysis of Immunological Data to Explore Chronic Immune T-Cell Activation in Successfully Treated HIV Patients</title><author><name sortKey="Picat, Marie Quitterie" sort="Picat, Marie Quitterie" uniqKey="Picat M" first="Marie-Quitterie" last="Picat">Marie-Quitterie Picat</name><affiliation><nlm:aff id="aff001"><addr-line>Centre INSERM U1219 Bordeaux Population Health, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff002"><addr-line>Univ. Bordeaux, ISPED, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff003"><addr-line>Service d’Information Médicale, USMR, CHU de Bordeaux - Pôle de Santé Publique, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff004"><addr-line>INRIA, Team SISTM, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff005"><addr-line>Vaccine Research Institute-VRI, Hôpital Henri Mondor, Créteil, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="Pellegrin, Isabelle" sort="Pellegrin, Isabelle" uniqKey="Pellegrin I" first="Isabelle" last="Pellegrin">Isabelle Pellegrin</name><affiliation><nlm:aff id="aff006"><addr-line>Laboratoire d’Immunologie-Immunogénétique, Pôle de Biologie, CHU Bordeaux, Bordeaux, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="Bitard, Juliette" sort="Bitard, Juliette" uniqKey="Bitard J" first="Juliette" last="Bitard">Juliette Bitard</name><affiliation><nlm:aff id="aff006"><addr-line>Laboratoire d’Immunologie-Immunogénétique, Pôle de Biologie, CHU Bordeaux, Bordeaux, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="Wittkop, Linda" sort="Wittkop, Linda" uniqKey="Wittkop L" first="Linda" last="Wittkop">Linda Wittkop</name><affiliation><nlm:aff id="aff001"><addr-line>Centre INSERM U1219 Bordeaux Population Health, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff002"><addr-line>Univ. Bordeaux, ISPED, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff003"><addr-line>Service d’Information Médicale, USMR, CHU de Bordeaux - Pôle de Santé Publique, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff004"><addr-line>INRIA, Team SISTM, Bordeaux, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="Proust Lima, Cecile" sort="Proust Lima, Cecile" uniqKey="Proust Lima C" first="Cécile" last="Proust-Lima">Cécile Proust-Lima</name><affiliation><nlm:aff id="aff001"><addr-line>Centre INSERM U1219 Bordeaux Population Health, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff002"><addr-line>Univ. Bordeaux, ISPED, Bordeaux, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="Liquet, Benoit" sort="Liquet, Benoit" uniqKey="Liquet B" first="Benoît" last="Liquet">Benoît Liquet</name><affiliation><nlm:aff id="aff007"><addr-line>Laboratoire de Mathématiques et de leurs Applications, Université de Pau et des Pays de l’Adour, UMR CNRS 5142, Pau, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff008"><addr-line>ARC Centre of Excellence for Mathematical and Statistical Frontiers, Queensland University of Technology (QUT), Brisbane, Australia</addr-line></nlm:aff></affiliation></author><author><name sortKey="Moreau, Jean Francois" sort="Moreau, Jean Francois" uniqKey="Moreau J" first="Jean-François" last="Moreau">Jean-François Moreau</name><affiliation><nlm:aff id="aff006"><addr-line>Laboratoire d’Immunologie-Immunogénétique, Pôle de Biologie, CHU Bordeaux, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff009"><addr-line>Univ. Bordeaux, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff010"><addr-line>CNRS, UMR 5164, Bordeaux, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="Bonnet, Fabrice" sort="Bonnet, Fabrice" uniqKey="Bonnet F" first="Fabrice" last="Bonnet">Fabrice Bonnet</name><affiliation><nlm:aff id="aff001"><addr-line>Centre INSERM U1219 Bordeaux Population Health, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff009"><addr-line>Univ. Bordeaux, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff011"><addr-line>Service de Médecine Interne et maladies Infectieuses, CHU de Bordeaux, Bordeaux, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="Blanco, Patrick" sort="Blanco, Patrick" uniqKey="Blanco P" first="Patrick" last="Blanco">Patrick Blanco</name><affiliation><nlm:aff id="aff006"><addr-line>Laboratoire d’Immunologie-Immunogénétique, Pôle de Biologie, CHU Bordeaux, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff009"><addr-line>Univ. Bordeaux, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff010"><addr-line>CNRS, UMR 5164, Bordeaux, France</addr-line></nlm:aff></affiliation></author><author><name sortKey="Thiebaut, Rodolphe" sort="Thiebaut, Rodolphe" uniqKey="Thiebaut R" first="Rodolphe" last="Thiébaut">Rodolphe Thiébaut</name><affiliation><nlm:aff id="aff001"><addr-line>Centre INSERM U1219 Bordeaux Population Health, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff002"><addr-line>Univ. Bordeaux, ISPED, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff003"><addr-line>Service d’Information Médicale, USMR, CHU de Bordeaux - Pôle de Santé Publique, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff004"><addr-line>INRIA, Team SISTM, Bordeaux, France</addr-line></nlm:aff></affiliation><affiliation><nlm:aff id="aff005"><addr-line>Vaccine Research Institute-VRI, Hôpital Henri Mondor, Créteil, France</addr-line></nlm:aff></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2017">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec id="sec001"><title>Objectives</title><p>To unravel the complex relationships between cytomegalovirus-induced-, autoimmune-induced responses, microbial translocation and chronic immune activation (CIA) in successfully treated HIV-infected patients and to explore the mediating role of alpha-interferon in these processes.</p></sec><sec id="sec002"><title>Design</title><p>Cross-sectional study nested in the ANRS CO3 Aquitaine Cohort, a prospective hospital-based cohort of HIV-1-infected patients in South-Western France.</p></sec><sec id="sec003"><title>Methods</title><p>Patients initiated antiretroviral therapy between 2005 and 2008 and were treated with sustained virological suppression for at least two years. CIA was defined by the percentage of HLA-DR+/CD38+ among CD8+T-cells. Integrative analyses were performed using structural equation modelling (SEM).</p></sec><sec id="sec004"><title>Results</title><p>The main analysis was performed in 57 HLA-A*0201 positive patients, due to availability of percentages of actin-, vimentin-, lamin-specific CD8+T-cells (HLA-A2-restricted tests) to further characterize autoimmune response. Cytomegalovirus-induced response was assessed by Quantiferon and pp-65 ELISPOT. SEM revealed a direct effect of cytomegalovirus-induced response on CIA (standardized estimate βstd = 0.56, p-value = 0.0004). The effect of autoimmune-induced response on CIA was indirect through alpha-interferon pathway, assessed by expression levels of 5 alpha-interferon-stimulated genes ADAR, ISG15, IFIT1, Mx1 and OAS1 (effect of autoimmune response on alpha-interferon: βstd = 0.36, p-value = 0.0401; effect of alpha-interferon on CIA: βstd = 0.39, p-value = 0.0044). There was no direct effect of autoimmune-induced response on CIA (p-value = 0.3169). Microbial translocation as measured by 16SrDNA and sCD14 in plasma was not associated with CIA. Results were consistent in 142 patients in whom cytomegalovirus and auto-immunity responses were measured by Quantiferon and anti-nuclear antibodies, respectively. All analyses performed in HLA-A*0201 positive patients and in the overall population revealed a significant effect of IFN-α latent variable on CIA.</p></sec><sec id="sec005"><title>Conclusion</title><p>The role of cytomegalovirus-induced response on CIA was confirmed as well as the involvement of alpha-interferon on CIA. The indirect effect of auto-immunity response on CIA revealed through the alpha-interferon pathway requires further investigation to confirm the potential role of auto-immunity for CIA in HIV-infected patients.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Deeks, Sg" uniqKey="Deeks S">SG Deeks</name></author><author><name sortKey="Kitchen, Cm" uniqKey="Kitchen C">CM Kitchen</name></author><author><name sortKey="Liu, L" uniqKey="Liu L">L Liu</name></author><author><name sortKey="Guo, H" uniqKey="Guo H">H Guo</name></author><author><name sortKey="Gascon, R" uniqKey="Gascon R">R Gascon</name></author><author><name sortKey="Narvaez, Ab" uniqKey="Narvaez A">AB Narvaez</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sodora, Dl" uniqKey="Sodora D">DL Sodora</name></author><author><name sortKey="Silvestri, G" uniqKey="Silvestri G">G Silvestri</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hsue, Py" uniqKey="Hsue P">PY Hsue</name></author><author><name sortKey="Deeks, Sg" uniqKey="Deeks S">SG Deeks</name></author><author><name sortKey="Hunt, Pw" uniqKey="Hunt P">PW Hunt</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Plaeger, Sf" uniqKey="Plaeger S">SF Plaeger</name></author><author><name sortKey="Collins, Bs" uniqKey="Collins B">BS Collins</name></author><author><name sortKey="Musib, R" uniqKey="Musib R">R Musib</name></author><author><name sortKey="Deeks, Sg" uniqKey="Deeks S">SG Deeks</name></author><author><name sortKey="Read, S" uniqKey="Read S">S Read</name></author><author><name sortKey="Embry, A" uniqKey="Embry A">A Embry</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tebas, P" uniqKey="Tebas P">P Tebas</name></author><author><name sortKey="Henry, Wk" uniqKey="Henry W">WK Henry</name></author><author><name sortKey="Matining, R" uniqKey="Matining R">R Matining</name></author><author><name sortKey="Weng Cherng, D" uniqKey="Weng Cherng D">D Weng-Cherng</name></author><author><name sortKey="Schmitz, J" uniqKey="Schmitz J">J Schmitz</name></author><author><name sortKey="Valdez, H" uniqKey="Valdez H">H Valdez</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nasi, M" uniqKey="Nasi M">M Nasi</name></author><author><name sortKey="De Biasi, S" uniqKey="De Biasi S">S De Biasi</name></author><author><name sortKey="Gibellini, L" uniqKey="Gibellini L">L Gibellini</name></author><author><name sortKey="Bianchini, E" uniqKey="Bianchini E">E Bianchini</name></author><author><name sortKey="Pecorini, S" uniqKey="Pecorini S">S Pecorini</name></author><author><name sortKey="Bacca, V" uniqKey="Bacca V">V Bacca</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Teijaro, Jr" uniqKey="Teijaro J">JR Teijaro</name></author><author><name sortKey="Ng, C" uniqKey="Ng C">C Ng</name></author><author><name sortKey="Lee, Am" uniqKey="Lee A">AM Lee</name></author><author><name sortKey="Sullivan, Bm" uniqKey="Sullivan B">BM Sullivan</name></author><author><name sortKey="Sheehan, Kc" uniqKey="Sheehan K">KC Sheehan</name></author><author><name sortKey="Welch, M" uniqKey="Welch M">M Welch</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wilson, Eb" uniqKey="Wilson E">EB Wilson</name></author><author><name sortKey="Yamada, Dh" uniqKey="Yamada D">DH Yamada</name></author><author><name sortKey="Elsaesser, H" uniqKey="Elsaesser H">H Elsaesser</name></author><author><name sortKey="Herskovitz, J" uniqKey="Herskovitz J">J Herskovitz</name></author><author><name sortKey="Deng, J" uniqKey="Deng J">J Deng</name></author><author><name sortKey="Cheng, G" uniqKey="Cheng G">G Cheng</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhou, Y" uniqKey="Zhou Y">Y Zhou</name></author><author><name sortKey="Zhang, Y" uniqKey="Zhang Y">Y Zhang</name></author><author><name sortKey="Moorman, Jp" uniqKey="Moorman J">JP Moorman</name></author><author><name sortKey="Yao, Zq" uniqKey="Yao Z">ZQ Yao</name></author><author><name sortKey="Jia, Zs" uniqKey="Jia Z">ZS Jia</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Acchioni, C" uniqKey="Acchioni C">C Acchioni</name></author><author><name sortKey="Marsili, G" uniqKey="Marsili G">G Marsili</name></author><author><name sortKey="Perrotti, E" uniqKey="Perrotti E">E Perrotti</name></author><author><name sortKey="Remoli, Al" uniqKey="Remoli A">AL Remoli</name></author><author><name sortKey="Sgarbanti, M" uniqKey="Sgarbanti M">M Sgarbanti</name></author><author><name sortKey="Battistini, A" uniqKey="Battistini A">A Battistini</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cha, L" uniqKey="Cha L">L Cha</name></author><author><name sortKey="Berry, Cm" uniqKey="Berry C">CM Berry</name></author><author><name sortKey="Nolan, D" uniqKey="Nolan D">D Nolan</name></author><author><name sortKey="Castley, A" uniqKey="Castley A">A Castley</name></author><author><name sortKey="Fernandez, S" uniqKey="Fernandez S">S Fernandez</name></author><author><name sortKey="French, Ma" uniqKey="French M">MA French</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ries, M" uniqKey="Ries M">M Ries</name></author><author><name sortKey="Pritschet, K" uniqKey="Pritschet K">K Pritschet</name></author><author><name sortKey="Schmidt, B" uniqKey="Schmidt B">B Schmidt</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rajasuriar, R" uniqKey="Rajasuriar R">R Rajasuriar</name></author><author><name sortKey="Khoury, G" uniqKey="Khoury G">G Khoury</name></author><author><name sortKey="Kamarulzaman, A" uniqKey="Kamarulzaman A">A Kamarulzaman</name></author><author><name sortKey="French, Ma" uniqKey="French M">MA French</name></author><author><name sortKey="Cameron, Pu" uniqKey="Cameron P">PU Cameron</name></author><author><name sortKey="Lewin, Sr" uniqKey="Lewin S">SR Lewin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Appay, V" uniqKey="Appay V">V Appay</name></author><author><name sortKey="Sauce, D" uniqKey="Sauce D">D Sauce</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Brenchley, Jm" uniqKey="Brenchley J">JM Brenchley</name></author><author><name sortKey="Price, Da" uniqKey="Price D">DA Price</name></author><author><name sortKey="Schacker, Tw" uniqKey="Schacker T">TW Schacker</name></author><author><name sortKey="Asher, Te" uniqKey="Asher T">TE Asher</name></author><author><name sortKey="Silvestri, G" uniqKey="Silvestri G">G Silvestri</name></author><author><name sortKey="Rao, S" uniqKey="Rao S">S Rao</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Klatt, Nr" uniqKey="Klatt N">NR Klatt</name></author><author><name sortKey="Funderburg, Nt" uniqKey="Funderburg N">NT Funderburg</name></author><author><name sortKey="Brenchley, Jm" uniqKey="Brenchley J">JM Brenchley</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jiang, W" uniqKey="Jiang W">W Jiang</name></author><author><name sortKey="Lederman, Mm" uniqKey="Lederman M">MM Lederman</name></author><author><name sortKey="Hunt, P" uniqKey="Hunt P">P Hunt</name></author><author><name sortKey="Sieg, Sf" uniqKey="Sieg S">SF Sieg</name></author><author><name sortKey="Haley, K" uniqKey="Haley K">K Haley</name></author><author><name sortKey="Rodriguez, B" uniqKey="Rodriguez B">B Rodriguez</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Appay, V" uniqKey="Appay V">V Appay</name></author><author><name sortKey="Fastenackels, S" uniqKey="Fastenackels S">S Fastenackels</name></author><author><name sortKey="Katlama, C" uniqKey="Katlama C">C Katlama</name></author><author><name sortKey="Ait Mohand, H" uniqKey="Ait Mohand H">H Ait-Mohand</name></author><author><name sortKey="Schneider, L" uniqKey="Schneider L">L Schneider</name></author><author><name sortKey="Guihot, A" uniqKey="Guihot A">A Guihot</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hsue, Py" uniqKey="Hsue P">PY Hsue</name></author><author><name sortKey="Hunt, Pw" uniqKey="Hunt P">PW Hunt</name></author><author><name sortKey="Sinclair, E" uniqKey="Sinclair E">E Sinclair</name></author><author><name sortKey="Bredt, B" uniqKey="Bredt B">B Bredt</name></author><author><name sortKey="Franklin, A" uniqKey="Franklin A">A Franklin</name></author><author><name sortKey="Killian, M" uniqKey="Killian M">M Killian</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Parrinello, Cm" uniqKey="Parrinello C">CM Parrinello</name></author><author><name sortKey="Sinclair, E" uniqKey="Sinclair E">E Sinclair</name></author><author><name sortKey="Landay, Al" uniqKey="Landay A">AL Landay</name></author><author><name sortKey="Lurain, N" uniqKey="Lurain N">N Lurain</name></author><author><name sortKey="Sharrett, Ar" uniqKey="Sharrett A">AR Sharrett</name></author><author><name sortKey="Gange, Sj" uniqKey="Gange S">SJ Gange</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hunt, Pw" uniqKey="Hunt P">PW Hunt</name></author><author><name sortKey="Martin, Jn" uniqKey="Martin J">JN Martin</name></author><author><name sortKey="Sinclair, E" uniqKey="Sinclair E">E Sinclair</name></author><author><name sortKey="Epling, L" uniqKey="Epling L">L Epling</name></author><author><name sortKey="Teague, J" uniqKey="Teague J">J Teague</name></author><author><name sortKey="Jacobson, Ma" uniqKey="Jacobson M">MA Jacobson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Stratton, R" uniqKey="Stratton R">R Stratton</name></author><author><name sortKey="Slapak, G" uniqKey="Slapak G">G Slapak</name></author><author><name sortKey="Mahungu, T" uniqKey="Mahungu T">T Mahungu</name></author><author><name sortKey="Kinloch De Loes, S" uniqKey="Kinloch De Loes S">S Kinloch-de Loes</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rawson, Pm" uniqKey="Rawson P">PM Rawson</name></author><author><name sortKey="Molette, C" uniqKey="Molette C">C Molette</name></author><author><name sortKey="Videtta, M" uniqKey="Videtta M">M Videtta</name></author><author><name sortKey="Altieri, L" uniqKey="Altieri L">L Altieri</name></author><author><name sortKey="Franceschini, D" uniqKey="Franceschini D">D Franceschini</name></author><author><name sortKey="Donato, T" uniqKey="Donato T">T Donato</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wittkop, L" uniqKey="Wittkop L">L Wittkop</name></author><author><name sortKey="Bitard, J" uniqKey="Bitard J">J Bitard</name></author><author><name sortKey="Lazaro, E" uniqKey="Lazaro E">E Lazaro</name></author><author><name sortKey="Neau, D" uniqKey="Neau D">D Neau</name></author><author><name sortKey="Bonnet, F" uniqKey="Bonnet F">F Bonnet</name></author><author><name sortKey="Mercie, P" uniqKey="Mercie P">P Mercie</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Banchereau, J" uniqKey="Banchereau J">J Banchereau</name></author><author><name sortKey="Pascual, V" uniqKey="Pascual V">V Pascual</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Blanco, P" uniqKey="Blanco P">P Blanco</name></author><author><name sortKey="Palucka, Ak" uniqKey="Palucka A">AK Palucka</name></author><author><name sortKey="Pascual, V" uniqKey="Pascual V">V Pascual</name></author><author><name sortKey="Banchereau, J" uniqKey="Banchereau J">J Banchereau</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kinloch, Aj" uniqKey="Kinloch A">AJ Kinloch</name></author><author><name sortKey="Chang, A" uniqKey="Chang A">A Chang</name></author><author><name sortKey="Ko, K" uniqKey="Ko K">K Ko</name></author><author><name sortKey="Henry Dunand, Cj" uniqKey="Henry Dunand C">CJ Henry Dunand</name></author><author><name sortKey="Henderson, S" uniqKey="Henderson S">S Henderson</name></author><author><name sortKey="Maienschein Cline, M" uniqKey="Maienschein Cline M">M Maienschein-Cline</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yang, S" uniqKey="Yang S">S Yang</name></author><author><name sortKey="Netterwald, J" uniqKey="Netterwald J">J Netterwald</name></author><author><name sortKey="Wang, W" uniqKey="Wang W">W Wang</name></author><author><name sortKey="Zhu, H" uniqKey="Zhu H">H Zhu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sanchez, Bn" uniqKey="Sanchez B">BN Sanchez</name></author><author><name sortKey="Budtz Jorgensen, E" uniqKey="Budtz Jorgensen E">E Budtz-Jorgensen</name></author><author><name sortKey="Ryan, Lm" uniqKey="Ryan L">LM Ryan</name></author><author><name sortKey="Hu, H" uniqKey="Hu H">H Hu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Thiebaut, R" uniqKey="Thiebaut R">R Thiebaut</name></author><author><name sortKey="Morlat, P" uniqKey="Morlat P">P Morlat</name></author><author><name sortKey="Jacqmin Gadda, H" uniqKey="Jacqmin Gadda H">H Jacqmin-Gadda</name></author><author><name sortKey="Neau, D" uniqKey="Neau D">D Neau</name></author><author><name sortKey="Mercie, P" uniqKey="Mercie P">P Mercie</name></author><author><name sortKey="Dabis, F" uniqKey="Dabis F">F Dabis</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ivashkiv, Lb" uniqKey="Ivashkiv L">LB Ivashkiv</name></author><author><name sortKey="Donlin, Lt" uniqKey="Donlin L">LT Donlin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Benito, Jm" uniqKey="Benito J">JM Benito</name></author><author><name sortKey="L Pez, M" uniqKey="L Pez M">M López</name></author><author><name sortKey="Lozano, S" uniqKey="Lozano S">S Lozano</name></author><author><name sortKey="Martinez, P" uniqKey="Martinez P">P Martinez</name></author><author><name sortKey="Gonzalez Lahoz, J" uniqKey="Gonzalez Lahoz J">J González-Lahoz</name></author><author><name sortKey="Soriano, V" uniqKey="Soriano V">V Soriano</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Blanco, P" uniqKey="Blanco P">P Blanco</name></author><author><name sortKey="Pitard, V" uniqKey="Pitard V">V Pitard</name></author><author><name sortKey="Viallard, Jf" uniqKey="Viallard J">JF Viallard</name></author><author><name sortKey="Taupin, Jl" uniqKey="Taupin J">JL Taupin</name></author><author><name sortKey="Pellegrin, Jl" uniqKey="Pellegrin J">JL Pellegrin</name></author><author><name sortKey="Moreau, Jf" uniqKey="Moreau J">JF Moreau</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Grace, J B" uniqKey="Grace J">J B Grace</name></author><author><name sortKey="Schoolmaster, Dr" uniqKey="Schoolmaster D">DR Schoolmaster</name></author><author><name sortKey="Guntenspergen, Gr" uniqKey="Guntenspergen G">GR Guntenspergen</name></author><author><name sortKey="Little, Am" uniqKey="Little A">AM Little</name></author><author><name sortKey="Mitchell, Br" uniqKey="Mitchell B">BR Mitchell</name></author><author><name sortKey="Miller, Km" uniqKey="Miller K">KM Miller</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chavance, M" uniqKey="Chavance M">M Chavance</name></author><author><name sortKey="Escolano, S" uniqKey="Escolano S">S Escolano</name></author><author><name sortKey="Romon, M" uniqKey="Romon M">M Romon</name></author><author><name sortKey="Basdevant, A" uniqKey="Basdevant A">A Basdevant</name></author><author><name sortKey="De Lauzon Guillain, B" uniqKey="De Lauzon Guillain B">B de Lauzon-Guillain</name></author><author><name sortKey="Charles, Ma" uniqKey="Charles M">MA Charles</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Dahly, Dl" uniqKey="Dahly D">DL Dahly</name></author><author><name sortKey="Adair, Ls" uniqKey="Adair L">LS Adair</name></author><author><name sortKey="Bollen, Ka" uniqKey="Bollen K">KA Bollen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Livak, Kj" uniqKey="Livak K">KJ Livak</name></author><author><name sortKey="Schmittgen, Td" uniqKey="Schmittgen T">TD Schmittgen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Holst, Kk" uniqKey="Holst K">KK Holst</name></author><author><name sortKey="J, E" uniqKey="J E">E J</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hoyle, Rh" uniqKey="Hoyle R">RH Hoyle</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hu, Lt" uniqKey="Hu L">LT Hu</name></author><author><name sortKey="Bentler, Pm" uniqKey="Bentler P">PM Bentler</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Genser, B" uniqKey="Genser B">B Genser</name></author><author><name sortKey="Cooper, Pj" uniqKey="Cooper P">PJ Cooper</name></author><author><name sortKey="Yazdanbakhsh, M" uniqKey="Yazdanbakhsh M">M Yazdanbakhsh</name></author><author><name sortKey="Barreto, Ml" uniqKey="Barreto M">ML Barreto</name></author><author><name sortKey="Rodrigues, Lc" uniqKey="Rodrigues L">LC Rodrigues</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hanf, M" uniqKey="Hanf M">M Hanf</name></author><author><name sortKey="Guegan, Jf" uniqKey="Guegan J">JF Guégan</name></author><author><name sortKey="Ahmed, I" uniqKey="Ahmed I">I Ahmed</name></author><author><name sortKey="Nacher, M" uniqKey="Nacher M">M Nacher</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Brown, Jr" uniqKey="Brown J">JR Brown</name></author><author><name sortKey="Stafford, P" uniqKey="Stafford P">P Stafford</name></author><author><name sortKey="Johnston, Sa" uniqKey="Johnston S">SA Johnston</name></author><author><name sortKey="Dinu, V" uniqKey="Dinu V">V Dinu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tetard Jones, C" uniqKey="Tetard Jones C">C Tétard-Jones</name></author><author><name sortKey="Gatehouse, Am" uniqKey="Gatehouse A">AM Gatehouse</name></author><author><name sortKey="Cooper, J" uniqKey="Cooper J">J Cooper</name></author><author><name sortKey="Leifert, C" uniqKey="Leifert C">C Leifert</name></author><author><name sortKey="Rushton, S" uniqKey="Rushton S">S Rushton</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Freeman, Ml" uniqKey="Freeman M">ML Freeman</name></author><author><name sortKey="Lederman, Mm" uniqKey="Lederman M">MM Lederman</name></author><author><name sortKey="Gianella, S" uniqKey="Gianella S">S Gianella</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gianella, S" uniqKey="Gianella S">S Gianella</name></author><author><name sortKey="Letendre, S" uniqKey="Letendre S">S Letendre</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lichtner, M" uniqKey="Lichtner M">M Lichtner</name></author><author><name sortKey="Cicconi, P" uniqKey="Cicconi P">P Cicconi</name></author><author><name sortKey="Vita, S" uniqKey="Vita S">S Vita</name></author><author><name sortKey="Cozzi Lepri, A" uniqKey="Cozzi Lepri A">A Cozzi-Lepri</name></author><author><name sortKey="Galli, M" uniqKey="Galli M">M Galli</name></author><author><name sortKey="Lo Caputo, S" uniqKey="Lo Caputo S">S Lo Caputo</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Effros, Rb" uniqKey="Effros R">RB Effros</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Freeman, Ml" uniqKey="Freeman M">ML Freeman</name></author><author><name sortKey="Mudd, Jc" uniqKey="Mudd J">JC Mudd</name></author><author><name sortKey="Shive, Cl" uniqKey="Shive C">CL Shive</name></author><author><name sortKey="Younes, Sa" uniqKey="Younes S">SA Younes</name></author><author><name sortKey="Panigrahi, S" uniqKey="Panigrahi S">S Panigrahi</name></author><author><name sortKey="Sieg, Sf" uniqKey="Sieg S">SF Sieg</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Stone, Sf" uniqKey="Stone S">SF Stone</name></author><author><name sortKey="Price, P" uniqKey="Price P">P Price</name></author><author><name sortKey="Khan, N" uniqKey="Khan N">N Khan</name></author><author><name sortKey="Moss, Pa" uniqKey="Moss P">PA Moss</name></author><author><name sortKey="French, Ma" uniqKey="French M">MA French</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Thom, Jt" uniqKey="Thom J">JT Thom</name></author><author><name sortKey="Oxenius, A" uniqKey="Oxenius A">A Oxenius</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Abad Fernandez, M" uniqKey="Abad Fernandez M">M Abad-Fernandez</name></author><author><name sortKey="Vallejo, A" uniqKey="Vallejo A">A Vallejo</name></author><author><name sortKey="Hernandez Novoa, B" uniqKey="Hernandez Novoa B">B Hernandez-Novoa</name></author><author><name sortKey="Diaz, L" uniqKey="Diaz L">L Diaz</name></author><author><name sortKey="Gutierrez, C" uniqKey="Gutierrez C">C Gutierrez</name></author><author><name sortKey="Madrid, N" uniqKey="Madrid N">N Madrid</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Akira, S" uniqKey="Akira S">S Akira</name></author><author><name sortKey="Takeda, K" uniqKey="Takeda K">K Takeda</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kader, M" uniqKey="Kader M">M Kader</name></author><author><name sortKey="Smith, Ap" uniqKey="Smith A">AP Smith</name></author><author><name sortKey="Guiducci, C" uniqKey="Guiducci C">C Guiducci</name></author><author><name sortKey="Wonderlich, Er" uniqKey="Wonderlich E">ER Wonderlich</name></author><author><name sortKey="Normolle, D" uniqKey="Normolle D">D Normolle</name></author><author><name sortKey="Watkins, Sc" uniqKey="Watkins S">SC Watkins</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Meier, A" uniqKey="Meier A">A Meier</name></author><author><name sortKey="Alter, G" uniqKey="Alter G">G Alter</name></author><author><name sortKey="Frahm, N" uniqKey="Frahm N">N Frahm</name></author><author><name sortKey="Sidhu, H" uniqKey="Sidhu H">H Sidhu</name></author><author><name sortKey="Li, B" uniqKey="Li B">B Li</name></author><author><name sortKey="Bagchi, A" uniqKey="Bagchi A">A Bagchi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Dunson, Db" uniqKey="Dunson D">DB Dunson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Schneider, Wm" uniqKey="Schneider W">WM Schneider</name></author><author><name sortKey="Chevillotte, Md" uniqKey="Chevillotte M">MD Chevillotte</name></author><author><name sortKey="Rice, Cm" uniqKey="Rice C">CM Rice</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Schoggins, Jw" uniqKey="Schoggins J">JW Schoggins</name></author><author><name sortKey="Rice, Cm" uniqKey="Rice C">CM Rice</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Younas, M" uniqKey="Younas M">M Younas</name></author><author><name sortKey="Psomas, C" uniqKey="Psomas C">C Psomas</name></author><author><name sortKey="Reynes, J" uniqKey="Reynes J">J Reynes</name></author><author><name sortKey="Corbeau, P" uniqKey="Corbeau P">P Corbeau</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Huang, Cy" uniqKey="Huang C">CY Huang</name></author><author><name sortKey="Lu, Cw" uniqKey="Lu C">CW Lu</name></author><author><name sortKey="Liu, Yl" uniqKey="Liu Y">YL Liu</name></author><author><name sortKey="Chiang, Ch" uniqKey="Chiang C">CH Chiang</name></author><author><name sortKey="Lee, Lt" uniqKey="Lee L">LT Lee</name></author><author><name sortKey="Huang, Kc" uniqKey="Huang K">KC Huang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Baltar, Vt" uniqKey="Baltar V">VT Baltar</name></author><author><name sortKey="Xun, Ww" uniqKey="Xun W">WW Xun</name></author><author><name sortKey="Johansson, M" uniqKey="Johansson M">M Johansson</name></author><author><name sortKey="Ferrari, P" uniqKey="Ferrari P">P Ferrari</name></author><author><name sortKey="Chuang, Sc" uniqKey="Chuang S">SC Chuang</name></author><author><name sortKey="Relton, C" uniqKey="Relton C">C Relton</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Shimizu, H" uniqKey="Shimizu H">H Shimizu</name></author><author><name sortKey="Arimura, Y" uniqKey="Arimura Y">Y Arimura</name></author><author><name sortKey="Onodera, K" uniqKey="Onodera K">K Onodera</name></author><author><name sortKey="Takahashi, H" uniqKey="Takahashi H">H Takahashi</name></author><author><name sortKey="Okahara, S" uniqKey="Okahara S">S Okahara</name></author><author><name sortKey="Kodaira, J" uniqKey="Kodaira J">J Kodaira</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mogensen, Ub" uniqKey="Mogensen U">UB Mogensen</name></author><author><name sortKey="Grandjean, P" uniqKey="Grandjean P">P Grandjean</name></author><author><name sortKey="Heilmann, C" uniqKey="Heilmann C">C Heilmann</name></author><author><name sortKey="Nielsen, F" uniqKey="Nielsen F">F Nielsen</name></author><author><name sortKey="Weihe, P" uniqKey="Weihe P">P Weihe</name></author><author><name sortKey="Budtz J Rgensen, E" uniqKey="Budtz J Rgensen E">E Budtz-Jørgensen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Genser, B" uniqKey="Genser B">B Genser</name></author><author><name sortKey="Fischer, Je" uniqKey="Fischer J">JE Fischer</name></author><author><name sortKey="Figueiredo, Ca" uniqKey="Figueiredo C">CA Figueiredo</name></author><author><name sortKey="Alcantara Neves, N" uniqKey="Alcantara Neves N">N Alcântara-Neves</name></author><author><name sortKey="Barreto, Ml" uniqKey="Barreto M">ML Barreto</name></author><author><name sortKey="Cooper, Pj" uniqKey="Cooper P">PJ Cooper</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Carver, S" uniqKey="Carver S">S Carver</name></author><author><name sortKey="Beatty, Ja" uniqKey="Beatty J">JA Beatty</name></author><author><name sortKey="Troyer, Rm" uniqKey="Troyer R">RM Troyer</name></author><author><name sortKey="Harris, Rl" uniqKey="Harris R">RL Harris</name></author><author><name sortKey="Stutzman Rodriguez, K" uniqKey="Stutzman Rodriguez K">K Stutzman-Rodriguez</name></author><author><name sortKey="Barrs, Vr" uniqKey="Barrs V">VR Barrs</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Paiardini, M" uniqKey="Paiardini M">M Paiardini</name></author><author><name sortKey="Muller Trutwin, M" uniqKey="Muller Trutwin M">M Müller-Trutwin</name></author></analytic></biblStruct></listBibl></div1></back></TEI><pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">PLoS One</journal-id><journal-id journal-id-type="iso-abbrev">PLoS ONE</journal-id><journal-id journal-id-type="publisher-id">plos</journal-id><journal-id journal-id-type="pmc">plosone</journal-id><journal-title-group><journal-title>PLoS ONE</journal-title></journal-title-group><issn pub-type="epub">1932-6203</issn><publisher><publisher-name>Public Library of Science</publisher-name><publisher-loc>San Francisco, CA USA</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">28046052</article-id><article-id pub-id-type="pmc">5207686</article-id><article-id pub-id-type="doi">10.1371/journal.pone.0169164</article-id><article-id pub-id-type="publisher-id">PONE-D-16-33104</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Cell Biology</subject><subj-group><subject>Cellular Types</subject><subj-group><subject>Animal Cells</subject><subj-group><subject>Blood Cells</subject><subj-group><subject>White Blood Cells</subject><subj-group><subject>T Cells</subject></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Cell Biology</subject><subj-group><subject>Cellular Types</subject><subj-group><subject>Animal Cells</subject><subj-group><subject>Immune Cells</subject><subj-group><subject>White Blood Cells</subject><subj-group><subject>T Cells</subject></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Immunology</subject><subj-group><subject>Immune Cells</subject><subj-group><subject>White Blood Cells</subject><subj-group><subject>T Cells</subject></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Medicine and Health Sciences</subject><subj-group><subject>Immunology</subject><subj-group><subject>Immune Cells</subject><subj-group><subject>White Blood Cells</subject><subj-group><subject>T Cells</subject></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Immunology</subject><subj-group><subject>Immune Response</subject></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Medicine and Health Sciences</subject><subj-group><subject>Immunology</subject><subj-group><subject>Immune Response</subject></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Immunology</subject><subj-group><subject>Immunity</subject><subj-group><subject>Immune Activation</subject></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Medicine and Health Sciences</subject><subj-group><subject>Immunology</subject><subj-group><subject>Immunity</subject><subj-group><subject>Immune Activation</subject></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and life sciences</subject><subj-group><subject>Cell biology</subject><subj-group><subject>Cellular types</subject><subj-group><subject>Animal cells</subject><subj-group><subject>Blood cells</subject><subj-group><subject>White blood cells</subject><subj-group><subject>T cells</subject><subj-group><subject>Cytotoxic T cells</subject></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and life sciences</subject><subj-group><subject>Cell biology</subject><subj-group><subject>Cellular types</subject><subj-group><subject>Animal cells</subject><subj-group><subject>Immune cells</subject><subj-group><subject>White blood cells</subject><subj-group><subject>T cells</subject><subj-group><subject>Cytotoxic T cells</subject></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and life sciences</subject><subj-group><subject>Immunology</subject><subj-group><subject>Immune cells</subject><subj-group><subject>White blood cells</subject><subj-group><subject>T cells</subject><subj-group><subject>Cytotoxic T cells</subject></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Medicine and health sciences</subject><subj-group><subject>Immunology</subject><subj-group><subject>Immune cells</subject><subj-group><subject>White blood cells</subject><subj-group><subject>T cells</subject><subj-group><subject>Cytotoxic T cells</subject></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and life sciences</subject><subj-group><subject>Organisms</subject><subj-group><subject>Viruses</subject><subj-group><subject>DNA viruses</subject><subj-group><subject>Herpesviruses</subject><subj-group><subject>Human Cytomegalovirus</subject></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Microbiology</subject><subj-group><subject>Medical Microbiology</subject><subj-group><subject>Microbial Pathogens</subject><subj-group><subject>Viral Pathogens</subject><subj-group><subject>Herpesviruses</subject><subj-group><subject>Human Cytomegalovirus</subject></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Medicine and Health Sciences</subject><subj-group><subject>Pathology and Laboratory Medicine</subject><subj-group><subject>Pathogens</subject><subj-group><subject>Microbial Pathogens</subject><subj-group><subject>Viral Pathogens</subject><subj-group><subject>Herpesviruses</subject><subj-group><subject>Human Cytomegalovirus</subject></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Organisms</subject><subj-group><subject>Viruses</subject><subj-group><subject>Viral Pathogens</subject><subj-group><subject>Herpesviruses</subject><subj-group><subject>Human Cytomegalovirus</subject></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Microbiology</subject><subj-group><subject>Medical Microbiology</subject><subj-group><subject>Microbial Pathogens</subject><subj-group><subject>Viral Pathogens</subject><subj-group><subject>Immunodeficiency Viruses</subject><subj-group><subject>HIV</subject></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Medicine and Health Sciences</subject><subj-group><subject>Pathology and Laboratory Medicine</subject><subj-group><subject>Pathogens</subject><subj-group><subject>Microbial Pathogens</subject><subj-group><subject>Viral Pathogens</subject><subj-group><subject>Immunodeficiency Viruses</subject><subj-group><subject>HIV</subject></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Organisms</subject><subj-group><subject>Viruses</subject><subj-group><subject>Viral Pathogens</subject><subj-group><subject>Immunodeficiency Viruses</subject><subj-group><subject>HIV</subject></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Organisms</subject><subj-group><subject>Viruses</subject><subj-group><subject>Immunodeficiency Viruses</subject><subj-group><subject>HIV</subject></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and life sciences</subject><subj-group><subject>Organisms</subject><subj-group><subject>Viruses</subject><subj-group><subject>RNA viruses</subject><subj-group><subject>Retroviruses</subject><subj-group><subject>Lentivirus</subject><subj-group><subject>HIV</subject></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Microbiology</subject><subj-group><subject>Medical Microbiology</subject><subj-group><subject>Microbial Pathogens</subject><subj-group><subject>Viral Pathogens</subject><subj-group><subject>Retroviruses</subject><subj-group><subject>Lentivirus</subject><subj-group><subject>HIV</subject></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Medicine and Health Sciences</subject><subj-group><subject>Pathology and Laboratory Medicine</subject><subj-group><subject>Pathogens</subject><subj-group><subject>Microbial Pathogens</subject><subj-group><subject>Viral Pathogens</subject><subj-group><subject>Retroviruses</subject><subj-group><subject>Lentivirus</subject><subj-group><subject>HIV</subject></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Organisms</subject><subj-group><subject>Viruses</subject><subj-group><subject>Viral Pathogens</subject><subj-group><subject>Retroviruses</subject><subj-group><subject>Lentivirus</subject><subj-group><subject>HIV</subject></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Physiology</subject><subj-group><subject>Immune Physiology</subject><subj-group><subject>Antibodies</subject></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Medicine and Health Sciences</subject><subj-group><subject>Physiology</subject><subj-group><subject>Immune Physiology</subject><subj-group><subject>Antibodies</subject></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Immunology</subject><subj-group><subject>Immune System Proteins</subject><subj-group><subject>Antibodies</subject></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Medicine and Health Sciences</subject><subj-group><subject>Immunology</subject><subj-group><subject>Immune System Proteins</subject><subj-group><subject>Antibodies</subject></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Biochemistry</subject><subj-group><subject>Proteins</subject><subj-group><subject>Immune System Proteins</subject><subj-group><subject>Antibodies</subject></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Research and Analysis Methods</subject><subj-group><subject>Immunologic Techniques</subject><subj-group><subject>Immunoassays</subject><subj-group><subject>Enzyme-Linked Immunoassays</subject></subj-group></subj-group></subj-group></subj-group></article-categories><title-group><article-title>Integrative Analysis of Immunological Data to Explore Chronic Immune T-Cell Activation in Successfully Treated HIV Patients</article-title><alt-title alt-title-type="running-head">Chronic Immune T-Cell Activation in HIV</alt-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Picat</surname><given-names>Marie-Quitterie</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref><xref ref-type="aff" rid="aff002"><sup>2</sup></xref><xref ref-type="aff" rid="aff003"><sup>3</sup></xref><xref ref-type="aff" rid="aff004"><sup>4</sup></xref><xref ref-type="aff" rid="aff005"><sup>5</sup></xref><xref ref-type="corresp" rid="cor001">*</xref></contrib><contrib contrib-type="author"><name><surname>Pellegrin</surname><given-names>Isabelle</given-names></name><xref ref-type="aff" rid="aff006"><sup>6</sup></xref></contrib><contrib contrib-type="author"><name><surname>Bitard</surname><given-names>Juliette</given-names></name><xref ref-type="aff" rid="aff006"><sup>6</sup></xref></contrib><contrib contrib-type="author"><name><surname>Wittkop</surname><given-names>Linda</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref><xref ref-type="aff" rid="aff002"><sup>2</sup></xref><xref ref-type="aff" rid="aff003"><sup>3</sup></xref><xref ref-type="aff" rid="aff004"><sup>4</sup></xref></contrib><contrib contrib-type="author"><name><surname>Proust-Lima</surname><given-names>Cécile</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref><xref ref-type="aff" rid="aff002"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Liquet</surname><given-names>Benoît</given-names></name><xref ref-type="aff" rid="aff007"><sup>7</sup></xref><xref ref-type="aff" rid="aff008"><sup>8</sup></xref></contrib><contrib contrib-type="author"><name><surname>Moreau</surname><given-names>Jean-François</given-names></name><xref ref-type="aff" rid="aff006"><sup>6</sup></xref><xref ref-type="aff" rid="aff009"><sup>9</sup></xref><xref ref-type="aff" rid="aff010"><sup>10</sup></xref></contrib><contrib contrib-type="author"><name><surname>Bonnet</surname><given-names>Fabrice</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref><xref ref-type="aff" rid="aff009"><sup>9</sup></xref><xref ref-type="aff" rid="aff011"><sup>11</sup></xref></contrib><contrib contrib-type="author"><name><surname>Blanco</surname><given-names>Patrick</given-names></name><xref ref-type="aff" rid="aff006"><sup>6</sup></xref><xref ref-type="aff" rid="aff009"><sup>9</sup></xref><xref ref-type="aff" rid="aff010"><sup>10</sup></xref></contrib><contrib contrib-type="author"><name><surname>Thiébaut</surname><given-names>Rodolphe</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref><xref ref-type="aff" rid="aff002"><sup>2</sup></xref><xref ref-type="aff" rid="aff003"><sup>3</sup></xref><xref ref-type="aff" rid="aff004"><sup>4</sup></xref><xref ref-type="aff" rid="aff005"><sup>5</sup></xref></contrib><contrib contrib-type="author"><collab>ANRS CO3 Aquitaine Cohort</collab><xref ref-type="author-notes" rid="fn001"><sup>¶</sup></xref></contrib></contrib-group><aff id="aff001"><label>1</label><addr-line>Centre INSERM U1219 Bordeaux Population Health, Bordeaux, France</addr-line></aff><aff id="aff002"><label>2</label><addr-line>Univ. Bordeaux, ISPED, Bordeaux, France</addr-line></aff><aff id="aff003"><label>3</label><addr-line>Service d’Information Médicale, USMR, CHU de Bordeaux - Pôle de Santé Publique, Bordeaux, France</addr-line></aff><aff id="aff004"><label>4</label><addr-line>INRIA, Team SISTM, Bordeaux, France</addr-line></aff><aff id="aff005"><label>5</label><addr-line>Vaccine Research Institute-VRI, Hôpital Henri Mondor, Créteil, France</addr-line></aff><aff id="aff006"><label>6</label><addr-line>Laboratoire d’Immunologie-Immunogénétique, Pôle de Biologie, CHU Bordeaux, Bordeaux, France</addr-line></aff><aff id="aff007"><label>7</label><addr-line>Laboratoire de Mathématiques et de leurs Applications, Université de Pau et des Pays de l’Adour, UMR CNRS 5142, Pau, France</addr-line></aff><aff id="aff008"><label>8</label><addr-line>ARC Centre of Excellence for Mathematical and Statistical Frontiers, Queensland University of Technology (QUT), Brisbane, Australia</addr-line></aff><aff id="aff009"><label>9</label><addr-line>Univ. Bordeaux, Bordeaux, France</addr-line></aff><aff id="aff010"><label>10</label><addr-line>CNRS, UMR 5164, Bordeaux, France</addr-line></aff><aff id="aff011"><label>11</label><addr-line>Service de Médecine Interne et maladies Infectieuses, CHU de Bordeaux, Bordeaux, France</addr-line></aff><contrib-group><contrib contrib-type="editor"><name><surname>Wilkinson</surname><given-names>Katalin Andrea</given-names></name><role>Editor</role><xref ref-type="aff" rid="edit1"></xref></contrib></contrib-group><aff id="edit1"><addr-line>University of Cape Town, SOUTH AFRICA</addr-line></aff><author-notes><fn fn-type="COI-statement" id="coi001"><p><bold>Competing Interests: </bold>The authors have declared that no competing interests exist.</p></fn><fn fn-type="con"><p><list list-type="simple"><list-item><p><bold>Conceptualization:</bold> IP JFM RT.</p></list-item><list-item><p><bold>Data curation:</bold> IP JB JFM PB FB.</p></list-item><list-item><p><bold>Formal analysis:</bold> MQP CPL BL LW RT.</p></list-item><list-item><p><bold>Funding acquisition:</bold> IP RT.</p></list-item><list-item><p><bold>Investigation:</bold> IP JB JFM PB FB.</p></list-item><list-item><p><bold>Methodology:</bold> LW RT MQP CPL BL.</p></list-item><list-item><p><bold>Project administration:</bold> MQP IP PB RT.</p></list-item><list-item><p><bold>Resources:</bold> IP JB JFM PB FB.</p></list-item><list-item><p><bold>Software:</bold> MQP CPL BL.</p></list-item><list-item><p><bold>Supervision:</bold> MQP IP PB RT.</p></list-item><list-item><p><bold>Validation:</bold> MQP CPL BL LW RT.</p></list-item><list-item><p><bold>Visualization:</bold> MQP IP JB LW CPL BL JFM FB PB RT.</p></list-item><list-item><p><bold>Writing – original draft:</bold> MQP RT.</p></list-item><list-item><p><bold>Writing – review & editing:</bold> MQP IP JB LW CPL BL JFM FB PB RT.</p></list-item></list></p></fn><fn fn-type="other" id="fn001"><p>¶ Membership of the ANRS CO3 Aquitaine Cohort is provided in the Acknowledgments.</p></fn><corresp id="cor001">* E-mail: <email>marie-quitterie.picat@isped.u-bordeaux2.fr</email></corresp></author-notes><pub-date pub-type="epub"><day>3</day><month>1</month><year>2017</year></pub-date><pub-date pub-type="collection"><year>2017</year></pub-date><volume>12</volume><issue>1</issue><elocation-id>e0169164</elocation-id><history><date date-type="received"><day>18</day><month>8</month><year>2016</year></date><date date-type="accepted"><day>13</day><month>12</month><year>2016</year></date></history><permissions><copyright-statement>© 2017 Picat et al</copyright-statement><copyright-year>2017</copyright-year><copyright-holder>Picat et al</copyright-holder><license xlink:href="http://creativecommons.org/licenses/by/4.0/"><license-p>This is an open access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution License</ext-link>, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p></license></permissions><self-uri content-type="pdf" xlink:href="pone.0169164.pdf"></self-uri><abstract><sec id="sec001"><title>Objectives</title><p>To unravel the complex relationships between cytomegalovirus-induced-, autoimmune-induced responses, microbial translocation and chronic immune activation (CIA) in successfully treated HIV-infected patients and to explore the mediating role of alpha-interferon in these processes.</p></sec><sec id="sec002"><title>Design</title><p>Cross-sectional study nested in the ANRS CO3 Aquitaine Cohort, a prospective hospital-based cohort of HIV-1-infected patients in South-Western France.</p></sec><sec id="sec003"><title>Methods</title><p>Patients initiated antiretroviral therapy between 2005 and 2008 and were treated with sustained virological suppression for at least two years. CIA was defined by the percentage of HLA-DR+/CD38+ among CD8+T-cells. Integrative analyses were performed using structural equation modelling (SEM).</p></sec><sec id="sec004"><title>Results</title><p>The main analysis was performed in 57 HLA-A*0201 positive patients, due to availability of percentages of actin-, vimentin-, lamin-specific CD8+T-cells (HLA-A2-restricted tests) to further characterize autoimmune response. Cytomegalovirus-induced response was assessed by Quantiferon and pp-65 ELISPOT. SEM revealed a direct effect of cytomegalovirus-induced response on CIA (standardized estimate βstd = 0.56, p-value = 0.0004). The effect of autoimmune-induced response on CIA was indirect through alpha-interferon pathway, assessed by expression levels of 5 alpha-interferon-stimulated genes ADAR, ISG15, IFIT1, Mx1 and OAS1 (effect of autoimmune response on alpha-interferon: βstd = 0.36, p-value = 0.0401; effect of alpha-interferon on CIA: βstd = 0.39, p-value = 0.0044). There was no direct effect of autoimmune-induced response on CIA (p-value = 0.3169). Microbial translocation as measured by 16SrDNA and sCD14 in plasma was not associated with CIA. Results were consistent in 142 patients in whom cytomegalovirus and auto-immunity responses were measured by Quantiferon and anti-nuclear antibodies, respectively. All analyses performed in HLA-A*0201 positive patients and in the overall population revealed a significant effect of IFN-α latent variable on CIA.</p></sec><sec id="sec005"><title>Conclusion</title><p>The role of cytomegalovirus-induced response on CIA was confirmed as well as the involvement of alpha-interferon on CIA. The indirect effect of auto-immunity response on CIA revealed through the alpha-interferon pathway requires further investigation to confirm the potential role of auto-immunity for CIA in HIV-infected patients.</p></sec></abstract><funding-group><award-group id="award001"><funding-source><institution-wrap><institution-id institution-id-type="funder-id">http://dx.doi.org/10.13039/100009060</institution-id><institution>Sidaction</institution></institution-wrap></funding-source><award-id>AI20-2-01629</award-id></award-group><award-group id="award002"><funding-source><institution>CHU of Bordeaux</institution></funding-source><award-id>2009-AO1063-54</award-id></award-group><award-group id="award003"><funding-source><institution>Vaccine Research Institute</institution></funding-source></award-group><award-group id="award004"><funding-source><institution>ANRS, Action Coordonnée no.7, Cohortes</institution></funding-source></award-group><funding-statement>This work was supported by Sidaction [AI20-2-01629], the CHU of Bordeaux [2009 AO1063-54] and the Vaccine Research Institute. The ANRS CO3 Aquitaine cohort was supported by the Agence nationale de recherches sur le sida et les hépatites virales [ANRS, Action Coordonnée no.7, Cohortes].</funding-statement></funding-group><counts><fig-count count="3"></fig-count><table-count count="2"></table-count><page-count count="19"></page-count></counts><custom-meta-group><custom-meta id="data-availability"><meta-name>Data Availability</meta-name><meta-value>All relevant data are within the paper and its Supporting Information files.</meta-value></custom-meta></custom-meta-group></article-meta><notes><title>Data Availability</title><p>All relevant data are within the paper and its Supporting Information files.</p></notes></front><body><sec sec-type="intro" id="sec006"><title>Introduction</title><p>Immune activation is a leading factor for human immunodeficiency virus (HIV) disease progression [<xref rid="pone.0169164.ref001" ref-type="bibr">1</xref>, <xref rid="pone.0169164.ref002" ref-type="bibr">2</xref>]. The persistence of immune activation is associated with both acquired immunodeficiency syndrome (AIDS) and non-AIDS comorbidities [<xref rid="pone.0169164.ref003" ref-type="bibr">3</xref>–<xref rid="pone.0169164.ref006" ref-type="bibr">6</xref>] in patients under successful antiretroviral therapy with long-term virological suppression. Noteworthy, chronic type I alpha-interferon (IFN-α) is a hallmark in chronic activation and has been reported as a factor influencing disease progression in persistent infections [<xref rid="pone.0169164.ref007" ref-type="bibr">7</xref>–<xref rid="pone.0169164.ref009" ref-type="bibr">9</xref>], including HIV [<xref rid="pone.0169164.ref010" ref-type="bibr">10</xref>–<xref rid="pone.0169164.ref012" ref-type="bibr">12</xref>]. The mechanisms driving chronic immune activation and type I interferon secretion are multifactorial and are not completely understood [<xref rid="pone.0169164.ref013" ref-type="bibr">13</xref>]. Cytomegalovirus (CMV) and microbial translocation have been proposed as triggering factors for persistent immune activationassociated with HIV-1 infection [<xref rid="pone.0169164.ref014" ref-type="bibr">14</xref>]. Microbial translocation and associated biomarkers, e.g. sCD14 and circulating plasma lipopolysaccharide [<xref rid="pone.0169164.ref015" ref-type="bibr">15</xref>–<xref rid="pone.0169164.ref017" ref-type="bibr">17</xref>], have been found to be implicated in the generation and maintenance of chronic immune activation. CMV is highly prevalent in HIV patients and may reactivate more frequently [<xref rid="pone.0169164.ref018" ref-type="bibr">18</xref>]. Indeed, HIV disrupts the balance between the host and coinfecting or dormant microbes, worsening control of these potential pathogens. HIV-infected adults are more likely to have subclinical bursts of CMV replication compared to the general population. CMV reactivation and replication begin due to a progressive loss of immune function, and, in particular, due to a loss of cell-mediated immunity. Increased CMV-specific antibodies and/or T cells have been associated with atherosclerosis [<xref rid="pone.0169164.ref019" ref-type="bibr">19</xref>, <xref rid="pone.0169164.ref020" ref-type="bibr">20</xref>] and impaired CD4 T-cell reconstitution [<xref rid="pone.0169164.ref018" ref-type="bibr">18</xref>] in HIV-infected patients on cART. Altogether, these data suggest that CMV coinfection may be a driver of persistent immune activation. Indeed, a randomized clinical trial with valgancyclovir in CMV-seropositive cART-treated patients (n = 30) found that both CMV DNA and expression of CD38+HLA DR+ on T cells declined significantly in patients given valgancyclovir therapy [<xref rid="pone.0169164.ref021" ref-type="bibr">21</xref>]. In parallel, auto-immune induced immune activation has also been suspected as a driver for immune activation but an association is less consistently found [<xref rid="pone.0169164.ref022" ref-type="bibr">22</xref>]. Hence, an increase in the proportion of autoreactive T-cells has been shown by Rawson et al [<xref rid="pone.0169164.ref023" ref-type="bibr">23</xref>].</p><p>The contribution of each of these factors potentially varying from patient to patient and over the course of the disease is not well described. Using univariable and multivariable linear regressions, we previously evaluated the impact of cytomegalovirus-induced, microbial translocation and autoimmune-induced immune responses on chronic immune activation in 191 HIV-1-infected patients with long-term virological suppression while on antiretroviral therapy combination in the ACTHIV substudy of the ANRS CO3 Aquitaine cohort [<xref rid="pone.0169164.ref024" ref-type="bibr">24</xref>] (<xref ref-type="supplementary-material" rid="pone.0169164.s001">S1 Table</xref> for summary results). We reported that the immune response against CMV was independently associated with a higher percentage of CD8+ T cell activation as measured by HLA-DR+/CD38+CD8+T-cells. In contrast, autoimmune response and microbial translocation were not associated with chronic immune activation in adjusted analyses. However, two difficulties limited these analyses. Firstly, each process can be measured by several biomarkers. For instance, the immune response to CMV can be measured by Quantiferon-CMV-, CMV-pp65-ELISPOT- and CMV-pp65-specific-CD8+T-cell-positivity. Therefore, each multivariable linear regression analysis considering only one marker does not reflect the whole process. Secondly, the mechanism leading to chronic immune activation is complex, multifactorial and involved intermediate pathways such as type I interferon. Autoimmunity, autoimmune diseases and the type I interferon system are closely linked. For example, a type I interferon signature can be found in many autoimmune disorders including lupus, dermatomyositis or type I diabetes. The mechanisms involved in type I interferon secretion in patients implicate the immune complexes-mediated activation of endosomal TLR activation by self DNA [<xref rid="pone.0169164.ref025" ref-type="bibr">25</xref>, <xref rid="pone.0169164.ref026" ref-type="bibr">26</xref>]. In chronic HIV patients it has been shown that the cross-presentation of caspase-cleaved self-antigen by dendritic cells was promoting the expansion and activation of self-reactive CD8+ T cells against vimentin [<xref rid="pone.0169164.ref023" ref-type="bibr">23</xref>]. A similar mechanism has been described in systemic lupus erythematosus patients in whom type I interferon promotes the differentiation of monocytes into dendritic cells, which are able to engulf apoptotic bodies and to present autoantigens to the adaptive immune system. Conversely, vimentin is an autoantigen targeted by the immune response in systemic lupus erythematosus patients [<xref rid="pone.0169164.ref027" ref-type="bibr">27</xref>]. In parallel, cytomegalovirus infection may also be able to stimulate type I IFN-α production through interferon-stimulated-genes [<xref rid="pone.0169164.ref028" ref-type="bibr">28</xref>].</p><p>We investigated the hypotheses of direct effects of CMV-induced, autoimmune-induced immune responses measured by percentages of actin-, vimentin-, lamin-specific CD8+T-cells and microbial translocation on chronic immune activation as well as indirect effects mediated by IFN-α gene expression, in successfully treated HIV-infected patients. We aimed at unravelling the complex relationships between CMV-induced-, autoimmune-induced immune responses, microbial translocation and chronic immune activation in these patients and to explore the mediating role of the IFN-α in these processes. We carried out an entirely new work including new data from gene expression analysis which were not presented in the former study. Furthermore we realized a distinct and original approach by using an integrative structural equation modelling analysis [<xref rid="pone.0169164.ref029" ref-type="bibr">29</xref>].</p></sec><sec sec-type="materials|methods" id="sec007"><title>Methods</title><sec id="sec008"><title>Population</title><p>The ACTHIV study [<xref rid="pone.0169164.ref024" ref-type="bibr">24</xref>] is a cross-sectional study nested in the ANRS CO3 Aquitaine Cohort [<xref rid="pone.0169164.ref030" ref-type="bibr">30</xref>], a prospective hospital-based cohort of HIV-1-infected patients, in South-Western France. Patients initiated antiretroviral therapy between 2005 and 2008, and were treated with sustained virological suppression (HIV-1 RNA load below the detection limit of 50 copies/mL) for at least two years. Exclusion criteria were two consecutive HIV-1 RNA above 50 copies/mL, hepatitis C virus or hepatitis B virus coinfection, and signs of acute infection. The ACTHIV protocol was approved by the Bordeaux University Institutional Review Board. All patients signed an informed consent before participating in the study.</p></sec><sec id="sec009"><title>Assessments of immune responses</title><p>Available biomarkers in the ACTHIV study for assessing CMV-induced-, autoimmune-induced immune responses, microbial translocation, quantitation of IFN-α gene expression and chronic immune activation are presented below. Methods for laboratory measurements assessed by flow cytometry have been reported in Wittkop et al [<xref rid="pone.0169164.ref024" ref-type="bibr">24</xref>] (<xref ref-type="sec" rid="sec007">Material and Methods</xref> subsection entitled “Laboratory measurements”).</p><sec id="sec010"><title>Cytomegalovirus-induced immune response</title><p>The CMV-induced immune response was determined by CMV seropositivity and using Quantiferon CMV analysis (Cellestis, Australia), CMV-pp65 enzyme-linked immunosorbent spot (EliSpot) analysis, and HLA-A0201 CMV-pp65-specific tetramers CD8+. CMV seropositivity was assessed by detecting immunoglobulin G and immunoglobulin M antibodies to CMV late antigens (Dade Behring, Deerfield, IL). Quantiferon is a trademark of the Cellestis company, now sold by Quiagen. QuantiFERON-CMV uses three specific blood collection tubes that are coated with peptides simulating CD8+-specific epitopes of CMV proteins, along with negative and positive control tubes. Stimulation of CD8+ T-cells in 1 ml of whole blood with the CMV peptides induces in the production of IFN-γ in infected individuals. An ELISA is then used to measure the amount of IFN-γ present in plasma from each of the 3 tubes (Negative control, CMV antigen, and mitogen control). A robust IFN-γ response in the CMV antigen tube indicates immunity to CMV. No correction for the amount of CD4 or CD8 or ratio CD4/CD8 T-cells exists. Patients were considered Quantiferon-CMV positive if they obtained a value above 0.2 IU/mL of INFgamma, as defined by the manufacturer.</p></sec><sec id="sec011"><title>Autoimmune-induced immune response</title><p>Immune response against specific self-antigens was evaluated with anti-nuclear antibody titers (titers ≥ 1:250 were considered as positive) and, in HLA-A*0201 positive patients, with percentages of CD8+ T-cells staining positive with actin-, vimentin-, lamin-loaded HLA-A*0201 tetramers.</p></sec><sec id="sec012"><title>Microbial translocation</title><p>We measured the level of bacterial 16SrDNA as direct marker of microbial translocation together with the level of soluble CD14 (sCD14) as a surrogate marker because LPS measurements in plasma yielded hardly detectable and inconsistent values [<xref rid="pone.0169164.ref024" ref-type="bibr">24</xref>]. Levels of sCD14 were quantified in diluted (1/50) plasma samples tested in duplicates, using an ELISA assay (Diaclone, Connecticut, USA). Plasma 16SrDNA was measured by quantitative polymerase chain reaction (PCR). Degenerate forward and reverse primers, (8F: <monospace>5’- AGAGTTTGATYMTGGCTCAG-3’</monospace>; 361R: <monospace>5’-CGYCCATTGBGBAADATTCC-3’</monospace>), and TaqMan probe (338P:5’-FAM-<monospace>TACGGGAGGCAGCAGT</monospace>-BHQ1-3’) for 16SrDNA were synthesized by Eurofins MWG biotech. A standard curve was created from serial dilutions of a plasmid DNA (pCR2.1 TOPO-16SrDNA) containing known copy numbers of the template.</p></sec><sec id="sec013"><title>Quantification of IFN-α-stimulated-genes: ADAR, ISG15, IFIT1, Mx1 and OAS1 gene expression</title><p>IFN-α gene expression was assessed using quantitative reverse transcription polymerase chain reaction (qRT-PCR) of five IFN-α-stimulated-genes: ADAR, ISG15, IFIT1, Mx1 and OAS1 [<xref rid="pone.0169164.ref031" ref-type="bibr">31</xref>]. Total RNA was extracted from peripheral blood mononuclear cells (obtained after Ficoll preparation and storage with Protector RNAse inhibitor (Roche applied biosciences), using the High pure RNA isolation kit (Roche applied biosciences). RNA extraction quality control was measured with the Agilent 2100 bioanalyzer in combination with Agilent RNA 6000 Nano kit (RNA sample quality was considered if the obtained RIN was >7). A total of 300 ng of RNA was reverse transcribed into cDNA using the Transcriptor Reverse Transcriptase kit (Roche applied biosciences). PCR was performed (RT2 SYBR Green qPCR MasterMix, SA Biosciences) in 96-wells plates using LightCycler 480 (Roche Diagnostics) to determine the expression levels of ADAR, ISG15, IFIT1, Mx1 and OAS1 target genes. IFN-α gene expression measurements were expressed as fold change which is calculated as a ratio of averages from control and test sample values.</p></sec><sec id="sec014"><title>Chronic immune T-cell activation (outcome)</title><p>Activation of T cells, particularly of CD8+ T cells, is a hallmark of chronic HIV infection. Levels of CD38+ on CD8+ cells are increased in chronic HIV infection and strongly correlate with plasma viremia [<xref rid="pone.0169164.ref032" ref-type="bibr">32</xref>]. The expression of the CD38+ is found on naive T-cells and as well on activated T-cells, whereas the expression of the HLA-DR molecule on CD8+ T cells strictly reflects the activation of T-cells. Thus, expression of activation markers including CD38 and/or HLA-DR is commonly monitored and assimilated to the degree of systemic immune activation. Of note, in patients with systemic lupus erythematosus, the expression of HLA-DR marker on CD8+ T lymphocytes correlates with disease activity [<xref rid="pone.0169164.ref033" ref-type="bibr">33</xref>]. Our aim was to characterize autoimmune response further in chronic HIV, this is why we chose the co-expression of CD38/HLA-DR on CD8+ T cells as outcome to assess chronic immune T-cell activation. The percentage of HLA-DR+CD38+CD8+T-cells among the CD8+ T-cell subset was evaluated in blood samples by flow cytometry.</p></sec></sec><sec id="sec015"><title>Statistical method and model assignment</title><sec id="sec016"><title>Structural equation models</title><p>Structural equation modelling with latent variables was applied to perform the integrative analysis of available biomarkers in the ACTHIV study. Structural equation models are generalizations of linear regression models, allowing for measurement error in the explanatory as well as the dependent variables. The models consist of analyses that enable direct and indirect effects between variables. The central research question often involves quantities (i.e. “latent variables”), that are unobserved variables for which no direct measurements exist. Existence of these “latent variables” may be revealed by associations among measured variables [<xref rid="pone.0169164.ref034" ref-type="bibr">34</xref>]. Latent variables translate the fact that several observed variables could be imperfect measurements of a single underlying concept [<xref rid="pone.0169164.ref035" ref-type="bibr">35</xref>, <xref rid="pone.0169164.ref036" ref-type="bibr">36</xref>].</p><p>The system of structural equation models is typically decomposed into two submodels: the measurement model and the structural model [<xref rid="pone.0169164.ref029" ref-type="bibr">29</xref>]. Firstly, the measurement model defines the construction of the latent variables with the corresponding observed measured variables (termed “indicators”), assumed to be correlated with the latent variable. In simple words, indicators are quantitative variables assumed to be normally distributed and the model for the latent variables consists of a system of linear regression models of the indicators. In this study, latent variables were built with quantitative biomarkers only. Secondly, the structural model specifies the pattern by which latent variables and observed variables influence each other, either directly or either indirectly.</p></sec><sec id="sec017"><title>Initially hypothesized model</title><p>On the basis of the background literature, we hypothesized direct effects of CMV-induced, autoimmune-induced immune responses and microbial translocation on chronic immune activation and also indirect effects (mediating role) of these factors through IFN-α gene expression. The main integrative analysis was performed in HLA-A*0201 positive patients because biomarkers (tetramers), more specific than anti-nuclear antibody titers in chronic HIV [<xref rid="pone.0169164.ref023" ref-type="bibr">23</xref>] to characterize autoimmune-induced immune response were available in HLA-A*0201 positive patients only.</p><p>We considered four latent variables supposed to be linked with chronic immune activation:</p><list list-type="bullet"><list-item><p>CMV-induced immune response latent variable measured by Quantiferon-CMV, CMV-pp65-ELISPOT and CMV-pp-65-specific-CD8+T-cells (as latent variables were built with quantitative biomarkers only, CMV seropositivity was not considered for assessing CMV-induced immune response latent variable),</p></list-item><list-item><p>autoimmune-induced immune response latent variable measured by anti-nuclear antibody titers and percentages of CD8+ T-cells staining positive with HLA-A0201 tetramers loaded with peptides from actin-, vimentin-, lamin-autoantigens,</p></list-item><list-item><p>microbial translocation latent variable measured by 16SrDNA and sCD14 in plasma,</p></list-item><list-item><p>IFN-α latent variable measured by expression levels of 5 IFN-α-stimulated genes. The initial hypothesized model is presented in <xref ref-type="fig" rid="pone.0169164.g001">Fig 1</xref> (hypothetical relationships between variables identified a priori).</p></list-item></list><fig id="pone.0169164.g001" orientation="portrait" position="float"><object-id pub-id-type="doi">10.1371/journal.pone.0169164.g001</object-id><label>Fig 1</label><caption><title>Initially hypothesized model representing the effects of cytomegalovirus-induced, autoimmune-induced immune responses and microbial translocation on chronic immune activation (model adjusted on age, CD4+ T-cell count and regulatory T-cell count).</title><p><bold>ACTHIV study</bold>. <italic>Boxes</italic>: <italic>observed variables; ellipses</italic>: <italic>latent variables; ε</italic>: <italic>measurement errors</italic>.</p></caption><graphic xlink:href="pone.0169164.g001"></graphic></fig></sec></sec><sec id="sec018"><title>Statistical analyses</title><p>Qualitative variables were described as numbers (percentages) and quantitative variables as medians (first quartile; third quartile), using SAS 9.13/SAS 9.3 (SAS Institute, Cary, NC, USA).</p><sec id="sec019"><title>Data preprocessing</title><p>The response variable, i.e. the percentage of HLA-DR+/CD38+ among CD8+T-cells, was log<sub>10</sub> transformed. IFN-α gene expression measurements were normalized to three reference genes GADPH, RPL13A, HPRT1 (housekeeping genes) using the 2<sup>−ΔΔCT</sup> method to correct expression data for differences between samples [<xref rid="pone.0169164.ref037" ref-type="bibr">37</xref>].</p></sec><sec id="sec020"><title>Testing the initial model validity</title><p>The goal of structural equation modeling analysis was to determine whether our hypothesized theoretical model (<xref ref-type="fig" rid="pone.0169164.g001">Fig 1</xref>), based on relevant literature, was supported by our sample data to reflect this theory. The consistency was evaluated through model-data fit, which indicated the extent to which the postulated network of relations among variables was plausible.</p><p>Structural equation models were conducted using data from subjects with no missing data for the variables included in the model (complete case analysis). Structural equation models were performed with R statistical software, using Lava package for linear latent variable models [<xref rid="pone.0169164.ref038" ref-type="bibr">38</xref>]. Parameters were obtained by maximum likelihood estimation. We started the modeling with the initially hypothesized model (<xref ref-type="fig" rid="pone.0169164.g001">Fig 1</xref>). Non-significant pathways were dropped to optimize the measurement of latent variables. The simplest and best explanation model for available data (final model) was the one maintaining the hypothesized general pathway identified from goodness-of-fit criteria. Goodness of fit was assessed using three indexes [<xref rid="pone.0169164.ref039" ref-type="bibr">39</xref>, <xref rid="pone.0169164.ref040" ref-type="bibr">40</xref>]: the chi-square test, the Standardized Root Mean Square Residual (SRMR) and the incremental Bentler’s Comparative Fit Index (CFI). Non-significant p-values at a 0.05 threshold for chi-square test, SRMR values below 0.08 and Bentler’s CFI value above 0.95 indicate a good fit. Structural equation modelling results were reported as standardized estimates βstd and p-values. Standardized estimates represent the expected change in standard deviation units of a variable, due to one standard deviation increase in another. As a unit free representation, they allow comparisons of the relative strength of associations and thus easier interpretation of the coefficients.</p></sec><sec id="sec021"><title>Sensitivity analyses</title><p>We considered the use of the percentage of HLA-DR+T-cells among CD8+ blood T-lymphocytes as the outcome to define chronic immune activation in the HLA-A*0201 positive sample. In addition an analysis in the overall sample was performed considering the CMV-induced immune response measured by Quantiferon-CMV (positive, i.e. ≥ 0.2 IU/mL vs. negative, i.e. < to 0.2 IU/mL) and the autoimmune-induced immune response measured by anti-nuclear antibody titers (positive, i.e. ≥ 1:250 vs. negative, i.e. < 1:250).</p></sec></sec></sec><sec sec-type="results" id="sec022"><title>Results</title><sec id="sec023"><title>Patients’ characteristics</title><p>A total of 191 patients were enrolled in the ACTHIV study (women: 25%). Median age at inclusion was 50 years old (43; 58). Median duration of viral suppression was 6.1 years (4; 8.5). Median CD4+ and CD8+ T-cell counts were 517 cells/μL (387; 720) and 676 cells/μL (480; 977). Patients had a median CD4+ nadir of 188 cells/μL (89; 275).</p><p>Of the 191 patients, 87 were HLA-A*0201 positive patients. There were no differences between HLA-A2 patients and the overall population except for the availability of measurements of percentages of CMV-pp65-specific tetramers CD8+ and actin-, vimentin-, lamin-specific CD8+T-cells in the HLA-A*0201 population (restricted tests).</p><p>Demographic, clinical and biological characteristics of the 87 HLA-A*0201 positive patients were representative of the overall population of 191 patients (<xref ref-type="table" rid="pone.0169164.t001">Table 1A and 1B</xref>).</p><table-wrap id="pone.0169164.t001" orientation="portrait" position="float"><object-id pub-id-type="doi">10.1371/journal.pone.0169164.t001</object-id><label>Table 1</label><caption><title>Demographic, clinical and biological patients’ characteristics.</title><p>ACTHIV study.</p></caption><alternatives><graphic id="pone.0169164.t001g" xlink:href="pone.0169164.t001"></graphic><table frame="hsides" rules="groups"><colgroup span="1"><col align="left" valign="middle" span="1"></col><col align="left" valign="middle" span="1"></col><col align="left" valign="middle" span="1"></col></colgroup><thead><tr><th align="left" colspan="3" rowspan="1">A</th></tr><tr><th align="justify" rowspan="2" colspan="1">Characteristics</th><th align="center" colspan="2" rowspan="1">Statistics<xref ref-type="table-fn" rid="t001fn001">*</xref></th></tr><tr><th align="right" rowspan="1" colspan="1">All (n = 191)</th><th align="right" rowspan="1" colspan="1">HLA-A2 (n = 87)</th></tr></thead><tbody><tr><td align="left" rowspan="1" colspan="1">Female</td><td align="right" rowspan="1" colspan="1">47 (25)</td><td align="right" rowspan="1" colspan="1">20 (23)</td></tr><tr><td align="left" rowspan="1" colspan="1">Age at inclusion</td><td align="right" rowspan="1" colspan="1">50 (43; 58)</td><td align="right" rowspan="1" colspan="1">50 (44; 60)</td></tr><tr><td align="left" colspan="3" rowspan="1">Risk factors</td></tr><tr><td align="left" rowspan="1" colspan="1"> • Homo-bisexual—MSM</td><td align="right" rowspan="1" colspan="1">92 (48)</td><td align="right" rowspan="1" colspan="1">43 (49)</td></tr><tr><td align="left" rowspan="1" colspan="1"> • Injection drug users/Blood products</td><td align="right" rowspan="1" colspan="1">1/1 (0.5/0.5)</td><td align="right" rowspan="1" colspan="1">1/0 (1.5/0)</td></tr><tr><td align="left" rowspan="1" colspan="1"> • Heterosexual</td><td align="right" rowspan="1" colspan="1">81 (42)</td><td align="right" rowspan="1" colspan="1">34 (39)</td></tr><tr><td align="left" rowspan="1" colspan="1"> • Other risk factors</td><td align="right" rowspan="1" colspan="1">16 (8)</td><td align="right" rowspan="1" colspan="1">9 (10.5)</td></tr><tr><td align="left" rowspan="1" colspan="1">CDC stage A</td><td align="right" rowspan="1" colspan="1">101 (53)</td><td align="right" rowspan="1" colspan="1">46)</td></tr><tr><td align="left" rowspan="1" colspan="1">CDC Stage B</td><td align="right" rowspan="1" colspan="1">48 (25)</td><td align="right" rowspan="1" colspan="1">33)</td></tr><tr><td align="left" rowspan="1" colspan="1">CDC Stage C</td><td align="right" rowspan="1" colspan="1">42 (22)</td><td align="right" rowspan="1" colspan="1">18 (21)</td></tr><tr><td align="left" rowspan="1" colspan="1">Duration since first reported seropositivity, years</td><td align="right" rowspan="1" colspan="1">12.3 (8; 18)</td><td align="right" rowspan="1" colspan="1">12.5 (7.5; 19)</td></tr><tr><td align="left" rowspan="1" colspan="1">Duration of viral suppression, years</td><td align="right" rowspan="1" colspan="1">6.1 (4; 8.5)</td><td align="right" rowspan="1" colspan="1">5.8 (4.4; 7.7)</td></tr><tr><td align="left" rowspan="1" colspan="1">Duration of ART exposure, years</td><td align="right" rowspan="1" colspan="1">9.7 (6; 13)</td><td align="right" rowspan="1" colspan="1">10.5 (5.9; 13.4)</td></tr><tr><td align="left" colspan="3" rowspan="1">cART at baseline</td></tr><tr><td align="left" rowspan="1" colspan="1"> • 2NRTI+1NNRTI</td><td align="right" rowspan="1" colspan="1">65 (34)</td><td align="right" rowspan="1" colspan="1">24 (28)</td></tr><tr><td align="left" rowspan="1" colspan="1"> • 2NRTI+1PI</td><td align="right" rowspan="1" colspan="1">100 (52)</td><td align="right" rowspan="1" colspan="1">48 (55)</td></tr><tr><td align="left" rowspan="1" colspan="1"> • Others</td><td align="right" rowspan="1" colspan="1">26 (14)</td><td align="right" rowspan="1" colspan="1">15 (17)</td></tr><tr><td align="left" colspan="3" rowspan="1"><bold><italic>CD4+ cells</italic></bold></td></tr><tr><td align="left" rowspan="1" colspan="1">CD4+ nadir, cells/μL</td><td align="right" rowspan="1" colspan="1">188 (89; 275)</td><td align="right" rowspan="1" colspan="1">172 (47; 249)</td></tr><tr><td align="left" rowspan="1" colspan="1">CD4+, cells/μL</td><td align="right" rowspan="1" colspan="1">517 (387; 720)</td><td align="right" rowspan="1" colspan="1">441 (328; 660)</td></tr><tr><td align="left" rowspan="1" colspan="1">CD4+, %</td><td align="right" rowspan="1" colspan="1">42 (33; 50)</td><td align="right" rowspan="1" colspan="1">42 (33; 48)</td></tr><tr><td align="left" rowspan="1" colspan="1">% HLA-DR+/CD38+ among CD4+ T-cells</td><td align="right" rowspan="1" colspan="1">4.5 (3.0; 6.5)</td><td align="right" rowspan="1" colspan="1">4.6 (3.0; 6.3)</td></tr><tr><td align="justify" colspan="3" rowspan="1"><bold>B</bold></td></tr><tr><td align="left" colspan="3" rowspan="1"><bold><italic>CD8+ cells</italic></bold></td></tr><tr><td align="left" rowspan="1" colspan="1">CD8+, cells/μL</td><td align="right" rowspan="1" colspan="1">676 (480; 977)</td><td align="right" rowspan="1" colspan="1">652 (478; 896)</td></tr><tr><td align="left" rowspan="1" colspan="1">% CD8+</td><td align="right" rowspan="1" colspan="1">53 (46; 62)</td><td align="right" rowspan="1" colspan="1">54 (48; 62)</td></tr><tr><td align="left" rowspan="1" colspan="1">% HLA-DR+/CD38+ among CD8+ T-cells</td><td align="right" rowspan="1" colspan="1">16.8 (11.1; 23.2)</td><td align="right" rowspan="1" colspan="1">15.8 (11.1; 22.6)</td></tr><tr><td align="left" rowspan="1" colspan="1"><bold>Regulatory T-cells</bold>, cells/μL</td><td align="right" rowspan="1" colspan="1">38 (25; 51)</td><td align="right" rowspan="1" colspan="1">35 (22; 49)</td></tr><tr><td align="left" rowspan="1" colspan="1"><bold>B lymphocytes</bold>, cells/μL</td><td align="right" rowspan="1" colspan="1">197 (137; 309)</td><td align="right" rowspan="1" colspan="1">197 (129; 274)</td></tr><tr><td align="left" rowspan="1" colspan="1"><bold>Natural killer lymphocytes</bold>, cells/μL</td><td align="right" rowspan="1" colspan="1">80 (30; 168)</td><td align="right" rowspan="1" colspan="1">81 (27; 192)</td></tr><tr><td align="justify" colspan="3" rowspan="1"><underline><bold>Cytomegalovirus-related variables</bold></underline></td></tr><tr><td align="left" rowspan="1" colspan="1">CMV Serology positive</td><td align="right" rowspan="1" colspan="1">177 (93)</td><td align="right" rowspan="1" colspan="1">79 (91)</td></tr><tr><td align="left" rowspan="1" colspan="1">CMV PCR positive (whole blood)</td><td align="right" rowspan="1" colspan="1">1 (0.5)</td><td align="right" rowspan="1" colspan="1">0 (0)</td></tr><tr><td align="left" rowspan="1" colspan="1">Quantiferon-CMV positive</td><td align="right" rowspan="1" colspan="1">148 (78)</td><td align="right" rowspan="1" colspan="1">71 (82)</td></tr><tr><td align="left" rowspan="1" colspan="1">Quantiferon-CMV values, IU/mL</td><td align="right" rowspan="1" colspan="1">3.3 (0.3; 9.8)</td><td align="right" rowspan="1" colspan="1">5.3 (0.9; 9.9)</td></tr><tr><td align="left" rowspan="1" colspan="1">CMV-pp65-ELISPOT<xref ref-type="table-fn" rid="t001fn002">†</xref></td><td align="right" rowspan="1" colspan="1">377.5 (120.0; 689.0)</td><td align="right" rowspan="1" colspan="1">452 (120; 728)</td></tr><tr><td align="left" rowspan="1" colspan="1">% CMV-pp-65-specific-CD8+T-cells</td><td align="right" rowspan="1" colspan="1">NA<xref ref-type="table-fn" rid="t001fn004">¶</xref></td><td align="right" rowspan="1" colspan="1">1.1 (0.1; 2.1)<xref ref-type="table-fn" rid="t001fn003">‡</xref></td></tr><tr><td align="left" colspan="3" rowspan="1"><underline><bold>Autoimmune response related variables</bold></underline></td></tr><tr><td align="left" rowspan="1" colspan="1">Antinuclear antibody positive</td><td align="right" rowspan="1" colspan="1">43 (26)<xref ref-type="table-fn" rid="t001fn003">‡</xref></td><td align="right" rowspan="1" colspan="1">21 (28)<xref ref-type="table-fn" rid="t001fn003">‡</xref></td></tr><tr><td align="left" rowspan="1" colspan="1">% Actin-specific-CD8+ T-cells</td><td align="right" rowspan="1" colspan="1">NA</td><td align="right" rowspan="1" colspan="1">0.03 (0.02; 0.06)<xref ref-type="table-fn" rid="t001fn003">‡</xref></td></tr><tr><td align="left" rowspan="1" colspan="1">% Vimentin-specific-CD8+ T-cells</td><td align="right" rowspan="1" colspan="1">NA</td><td align="right" rowspan="1" colspan="1">0.01 (0.01; 0.02)<xref ref-type="table-fn" rid="t001fn003">‡</xref></td></tr><tr><td align="left" rowspan="1" colspan="1">% Lamin-specific-CD8+ T-cells</td><td align="right" rowspan="1" colspan="1">NA</td><td align="right" rowspan="1" colspan="1">0.01 (0.01; 0.02)<xref ref-type="table-fn" rid="t001fn003">‡</xref></td></tr><tr><td align="left" colspan="3" rowspan="1"><underline><bold>Microbial translocation related variables</bold></underline></td></tr><tr><td align="left" rowspan="1" colspan="1">sCD14 μg/mL</td><td align="right" rowspan="1" colspan="1">1.9 (1.6; 2.2)</td><td align="right" rowspan="1" colspan="1">1.8 (1.6; 1.9)</td></tr><tr><td align="left" rowspan="1" colspan="1">16S rDNA log<sub>10</sub> copies/mL</td><td align="right" rowspan="1" colspan="1">3.2 (3.0; 3.5)</td><td align="right" rowspan="1" colspan="1">3.3 (3.1; 3.4)</td></tr></tbody></table></alternatives><table-wrap-foot><fn id="t001fn001"><p>* for categorical variables n (%), for quantitative variables median (first quartile; third quartile) are presented. NRTI, nucleoside reverse-transcriptase inhibitor; NNRTI, non-nucleoside reverse-transcriptase inhibitor; PI, protease inhibitor; MSM, men who have sex with men; CDC, Centers for Disease Control and Prevention; cART, antiretroviral therapy combination.</p></fn><fn id="t001fn002"><p><sup>†</sup> Median spot-forming cells / 2.5×105 peripheral blood mononuclear cells.</p></fn><fn id="t001fn003"><p><sup>‡</sup> Less than 10% of missing values.</p></fn><fn id="t001fn004"><p><sup>¶</sup> Not applicable.</p></fn></table-wrap-foot></table-wrap></sec><sec id="sec024"><title>Measurement of the processes</title><p>Main patient’s characteristics of variables related to CMV-, autoimmune-induced immune responses and microbial translocation are reported in <xref ref-type="table" rid="pone.0169164.t001">Table 1B</xref>. In the overall population, Quantiferon-CMV was positive in 78% of patients and antinuclear antibodies were positive in 26% of patients. In the HLA-A*0201 positive patients, Quantiferon-CMV was positive in 82% and antinuclear antibodies were positive in 28% of patients. Levels of the tested self-antigen-specific T cells were low in this study. Levels of 16SrDNA and sCD14 for studying microbial translocation did not differ between the HLA-A*0201 positive patients and the overall population (<xref ref-type="table" rid="pone.0169164.t001">Table 1B</xref>).</p><p>Of the 87 HLA-A*0201 positive patients, the main complete analysis was performed in the 57 patients in whom the percentages of actin-, vimentin-, lamin-specific CD8+T-cells as well as Quantiferon, pp-65 ELISPOT for CMV were available (subjects with missing values for variables included in the model were excluded). The 30 other patients did not differ from the 57 HLA-A*0201 positive patients included in the final analysis. In the 57 patients, median % of HLA-DR+/CD38+CD8+T-cells was 15.8 (11.7; 23.2). Median % actin-specific-CD8+ T cells, % vimentin-specific-CD8+ T cells, % lamin-specific-CD8+ T cells were respectively 0.03 (0.02; 0.06), 0.01 (0.01; 0.02) and 0.01 (0.01; 0.02). Median Quantiferon-CMV values were 5.3 IU/mL (0.4; 11.5) and median CMV-pp65-ELISPOT values were 309 (95; 645). IFN-α gene expression measurements were positively and significantly correlated with the percentages of HLA-DR+/CD38+CD8+T-cells (<xref ref-type="fig" rid="pone.0169164.g002">Fig 2</xref>).</p><fig id="pone.0169164.g002" orientation="portrait" position="float"><object-id pub-id-type="doi">10.1371/journal.pone.0169164.g002</object-id><label>Fig 2</label><caption><title>Spearman correlations between percentages of CD8+CD38+HLA-DR+ T-cells and IFN-α gene expression measurements, HLA-A*0201 positive patients (n = 57).</title><p><bold>ACTHIV study</bold>. <italic>A) ADAR</italic>: <italic>r = 0</italic>.<italic>31</italic>, <italic>p-value = 0</italic>.<italic>0180; B) ISG15</italic>: <italic>r = 0</italic>.<italic>34</italic>, <italic>p-value = 0</italic>.<italic>0085; C) IFIT1</italic>: <italic>r = 0</italic>.<italic>32</italic>, <italic>p-value = 0</italic>.<italic>0166; D) Mx1</italic>: <italic>r = 0</italic>.<italic>29</italic>, <italic>p-value = 0</italic>.<italic>0301; E) OAS1</italic>: <italic>r = 0</italic>.<italic>35</italic>, <italic>p-value = 0</italic>.<italic>0077</italic>.</p></caption><graphic xlink:href="pone.0169164.g002"></graphic></fig></sec><sec id="sec025"><title>Main integrative analysis in HLA-A*0201 positive patients</title><sec id="sec026"><title>Model building</title><p>The model building started with the model represented in <xref ref-type="fig" rid="pone.0169164.g001">Fig 1</xref>. As biomarkers of microbial translocation were not associated with chronic immune activation in univariable analysis (16SrDNA effect: p-value = 0.6100; sCD4 effect: p-value = 0.9750; microbial translocation latent variable: p-value = 0.9922) and in multivariable analysis performed in our previous work [<xref rid="pone.0169164.ref024" ref-type="bibr">24</xref>], they were dropped from the final model. Anti-nuclear antibodies were not contributive for the definition of the autoimmune-induced immune response latent variable (p-value = 0.2785) as well as CMV-pp65-specific-CD8+ T-cells for the definition of the CMV-induced immune response latent variable (p-value = 0.7049). Therefore, further analyses included the effect of CMV-induced immune response measured by Quantiferon and pp-65 ELISPOT, autoimmune-induced immune response measured by actin, vimentin, lamin-specific CD8+, interferon-α pathway measured by the expression level of the five interferon signaling genes (ADAR, ISG15, IFIT1, Mx1 and OAS1) and chronic immune activation.</p></sec><sec id="sec027"><title>Final model</title><p>The final best-fit model for ACTHIV data is shown in <xref ref-type="fig" rid="pone.0169164.g003">Fig 3</xref> ant the corresponding results are presented in <xref ref-type="table" rid="pone.0169164.t002">Table 2</xref>.</p><table-wrap id="pone.0169164.t002" orientation="portrait" position="float"><object-id pub-id-type="doi">10.1371/journal.pone.0169164.t002</object-id><label>Table 2</label><caption><title>Effects of cytomegalovirus-, autoimmune-induced immune responses on chronic immune activation (HLA-DR+/CD38+CD8+ T-cells log10%), HLA-A*0201 positive patients (n = 57).</title><p>Main integrative analysis to read in conjunction with <xref ref-type="fig" rid="pone.0169164.g003">Fig 3</xref>. ACTHIV study.</p></caption><alternatives><graphic id="pone.0169164.t002g" xlink:href="pone.0169164.t002"></graphic><table frame="hsides" rules="groups"><colgroup span="1"><col align="left" valign="middle" span="1"></col><col align="left" valign="middle" span="1"></col><col align="left" valign="middle" span="1"></col></colgroup><thead><tr><th align="justify" rowspan="1" colspan="1">Process</th><th align="right" rowspan="1" colspan="1">βstd<xref ref-type="table-fn" rid="t002fn001">*</xref></th><th align="justify" rowspan="1" colspan="1">p value</th></tr></thead><tbody><tr><td align="left" colspan="3" rowspan="1"><underline><bold>Measurement models (latent variable definitions)</bold></underline></td></tr><tr><td align="left" colspan="3" rowspan="1"><bold>Cytomegalovirus(CMV)-induced immune response latent variable</bold></td></tr><tr><td align="left" rowspan="1" colspan="1">CMV response latent variable → Quantiferon-CMV</td><td align="char" char="." rowspan="1" colspan="1">0.61</td><td align="char" char="." rowspan="1" colspan="1">< 0.0001</td></tr><tr><td align="left" rowspan="1" colspan="1">CMV response latent variable → CMV-pp-65-ELISPOT</td><td align="char" char="." rowspan="1" colspan="1">0.51</td><td align="char" char="." rowspan="1" colspan="1">< 0.0001</td></tr><tr><td align="left" colspan="3" rowspan="1"><bold>Autoimmune(AI)-induced immune response latent variable</bold></td></tr><tr><td align="left" rowspan="1" colspan="1">AI response latent variable → % actin-specific-CD8+</td><td align="char" char="." rowspan="1" colspan="1">0.23</td><td align="char" char="." rowspan="1" colspan="1">0.0862</td></tr><tr><td align="left" rowspan="1" colspan="1">AI response latent variable → % vimentin-specific-CD8+</td><td align="char" char="." rowspan="1" colspan="1">0.52</td><td align="char" char="." rowspan="1" colspan="1">0.0006</td></tr><tr><td align="justify" rowspan="1" colspan="1">AI response latent variable → % lamin-specific-CD8+</td><td align="char" char="." rowspan="1" colspan="1">0.39</td><td align="char" char="." rowspan="1" colspan="1">0.0184</td></tr><tr><td align="left" colspan="3" rowspan="1"><bold>IFN-α-stimulated-genes latent variable</bold></td></tr><tr><td align="left" rowspan="1" colspan="1">IFN-α-stimulated-genes latent variable → ADAR</td><td align="char" char="." rowspan="1" colspan="1">0.59</td><td align="char" char="." rowspan="1" colspan="1">< 0.0001</td></tr><tr><td align="left" rowspan="1" colspan="1">IFN-α-stimulated-genes latent variable → ISG15</td><td align="char" char="." rowspan="1" colspan="1">0.54</td><td align="char" char="." rowspan="1" colspan="1">< 0.0001</td></tr><tr><td align="left" rowspan="1" colspan="1">IFN-α-stimulated-genes latent variable → IFIT1</td><td align="char" char="." rowspan="1" colspan="1">0.94</td><td align="char" char="." rowspan="1" colspan="1">< 0.0001</td></tr><tr><td align="left" rowspan="1" colspan="1">IFN-α-stimulated-genes latent variable → Mx1</td><td align="char" char="." rowspan="1" colspan="1">0.93</td><td align="char" char="." rowspan="1" colspan="1">< 0.0001</td></tr><tr><td align="left" rowspan="1" colspan="1">IFN-α-stimulated-genes latent variable → OAS1</td><td align="char" char="." rowspan="1" colspan="1">0.77</td><td align="char" char="." rowspan="1" colspan="1">< 0.0001</td></tr><tr><td align="left" colspan="3" rowspan="1"><underline><bold>Structural model</bold></underline></td></tr><tr><td align="left" rowspan="1" colspan="1">CMV response latent variable → IFN-α-stimulated-genes latent variable</td><td align="char" char="." rowspan="1" colspan="1">0.02</td><td align="char" char="." rowspan="1" colspan="1">0.9069</td></tr><tr><td align="left" rowspan="1" colspan="1">CMV response latent variable → % HLA-DR+/CD38+CD8+</td><td align="char" char="." rowspan="1" colspan="1">0.56</td><td align="char" char="." rowspan="1" colspan="1"><bold>0.0004</bold></td></tr><tr><td align="left" rowspan="1" colspan="1">AI response latent variable → IFN-α-stimulated-genes latent variable</td><td align="char" char="." rowspan="1" colspan="1">0.36</td><td align="char" char="." rowspan="1" colspan="1"><bold>0.0401</bold></td></tr><tr><td align="left" rowspan="1" colspan="1">AI response latent variable → % HLA-DR+/CD38+CD8+</td><td align="char" char="." rowspan="1" colspan="1">-0.10</td><td align="char" char="." rowspan="1" colspan="1">0.3169</td></tr><tr><td align="justify" rowspan="1" colspan="1">IFN-α-stimulated-genes latent variable → % HLA-DR+/CD38+CD8+</td><td align="char" char="." rowspan="1" colspan="1">0.39</td><td align="char" char="." rowspan="1" colspan="1"><bold>0.0044</bold></td></tr></tbody></table></alternatives><table-wrap-foot><fn id="t002fn001"><p>* Standardized estimates</p></fn></table-wrap-foot></table-wrap><fig id="pone.0169164.g003" orientation="portrait" position="float"><object-id pub-id-type="doi">10.1371/journal.pone.0169164.g003</object-id><label>Fig 3</label><caption><title>Final hypothesized model representing the effects of cytomegalovirus-induced-, autoimmune-induced immune responses latent variables on chronic immune activation.</title><p><bold>Figure to read in conjunction with</bold><xref ref-type="table" rid="pone.0169164.t002">Table 2</xref>. <bold>ACTHIV study</bold>. <italic>Boxes</italic>: <italic>observed variables; ellipses</italic>: <italic>latent variables; measurement errors deleted for clarity</italic>.<italic>*p-values < 0</italic>.<italic>05</italic>. <italic>**p-values < 0</italic>.<italic>0001</italic>.</p></caption><graphic xlink:href="pone.0169164.g003"></graphic></fig><p>Quantiferon-CMV (βstd = 0.61) and CMV-pp-65-ELISPOT (βstd = 0.51) contributed significantly to the CMV-induced response. The positive significant standardized estimates mean that higher levels of CMV-induced response were associated with higher levels of Quantiferon-CMV and CMV-pp-65-ELISPOT. Autoimmune-induced response was composed by % actin-specific-CD8+ T cells, % vimentin-specific-CD8+ T cells and % lamin-specific-CD8+ T cells. All standardized estimates were positive. The percentage of vimentin-specific-CD8+ T cells presented the highest contribution to explain the autoimmune-induced response variation (βstd = 0.52, p-value = 0.0006). IFN-α gene latent variable was composed of expression levels of IFN-α-stimulated genes: ADAR (βstd = 0.59), ISG15 (βstd = 0.54), IFIT1 (βstd = 0.94), Mx1 (βstd = 0.93), OAS1 (βstd = 0.77).</p><p>The analysis of the effect of each single process revealed a direct association of chronic immune activation of CD8+ T-cells with CMV-induced response (βstd = 0.42, p-value = 0.0232), and with IFN-α genes (βstd = 0.31, p-value = 0.0093). No direct effect of autoimmune-induced response and chronic immune activation was found (βstd = 0.04, p-value = 0.7361). However, autoimmune-induced response was associated with IFN-α genes (βstd = 0.33, p-value = 0.0457).</p><p>The structural model including all processes presented in <xref ref-type="fig" rid="pone.0169164.g003">Fig 3</xref> revealed a direct positive significant effect of the CMV-induced response on chronic immune activation (βstd = 0.56, p-value = 0.0004) but no significant association with the IFN-α genes (p-value = 0.9069). There was no direct significant association of autoimmune-induced response and chronic immune activation (p-value = 0.3169). The effect of autoimmune-induced response on chronic immune activation was indirect through IFN-α genes: autoimmune-induced response was significantly associated with IFN-α genes (βstd = 0.36, p-value = 0.0401) and IFN-α genes were associated with chronic immune activation (βstd = 0.39, p-value = 0.0044). The goodness of fit of the model was fair (chi-square p-value = 0.32; SRMR = 0.07; CFI = 0.98). These findings persisted after adjustment for age, CD4+ T-cell count and regulatory T-cell count (<xref ref-type="supplementary-material" rid="pone.0169164.s002">S2 Table</xref>).</p><p>When defining CD8+ T-cell activation with % CD8+HLA-DR+ T cells (log<sub>10</sub> transformed) in place of % CD8+CD38+HLA-DR+ as the outcome, the adjusted results were consistent (<xref ref-type="supplementary-material" rid="pone.0169164.s003">S3 Table</xref>). There was a direct positive significant effect of CMV-induced response on chronic immune activation (βstd = 0.45, p-value = 0.0056) as well as an indirect effect of autoimmune-induced response on chronic immune activation through IFN-α genes. Autoimmune-induced response was significantly associated with IFN-α genes (βstd = 0.35, p-value = 0.0345) and IFN-α genes were associated with chronic immune activation (βstd = 0.35, p-value = 0.0111).</p></sec><sec id="sec028"><title>Sensitivity analysis in the overall population</title><p>Of the 191 patients included in the ACTHIV study, the sensitivity analysis was performed in 142 patients in whom Quantiferon-CMV positive versus negative, anti-nuclear antibody titers positive versus negative, interferon-stimulated genes and % HLA-DR+/CD38+CD8+ T-cells were available (including the 57 patients from the main integrative analysis). In these patients, median % of HLA-DR+/CD38+CD8+T-cells was 16.9 (10.8; 23.7), Quantiferon-CMV was positive in 78% of patients and antinuclear antibodies were positive in 23% of patients. The adjusted results were roughly consistent with previous results (<xref ref-type="supplementary-material" rid="pone.0169164.s004">S4 Table</xref>). Quantiferon-CMV positivity was associated with higher percentage of CD8+CD38+HLA-DR+ (βstd = 0.15, p-value = 0.0648), positive anti-nuclear antibody titers were associated with higher expression of IFN-α genes (βstd = 0.16, p-value = 0.0797) and higher IFN-α-gene expression was associated with chronic immune activation (βstd = 0.22, p-value = 0.0120).</p></sec></sec></sec><sec sec-type="conclusions" id="sec029"><title>Discussion</title><p>Exploring the mechanisms driving chronic immune activation in successfully treated HIV-infected patients requires a statistical modelling approach. Testable pathways need to be identified a priori and hypotheses regarding the relationships between multifactorial triggers involved in chronic HIV need to be challenged by this approach. Common strategies for multiple markers are to analyze each marker separately or to include original markers simultaneously as predictors in multivariable regression models, assuming the presence of one single relationship between variables. In addition to neglecting any a priori knowledge, these strategies could lead to invalidate results due to: i) type I error inflation from multiple testings, ii) type II errors (missing true associations) because immune markers only reflect a small part of the variation of the underlying immunological mechanism, iii) estimation problems due to multicollinearity or neglected measurement errors. Thus, to unravel the complexity of research questions addressed by modern immunological studies, sophisticated statistical approaches are necessary [<xref rid="pone.0169164.ref041" ref-type="bibr">41</xref>–<xref rid="pone.0169164.ref044" ref-type="bibr">44</xref>].</p><p>In this study, we considered the potential for using SEM to investigate the mediating role of INF-α in chronic immune activation in successfully treated HIV-infected patients. The advantage of SEM is to use all available information in an integrative analysis, avoiding the methodological issues mentioned above. Moreover, latent variables are defined by several markers that could reflect an underlying immunological mechanism and SEM considers a priori knowledge limiting the number of analyses to run and multiple testing. Due to availability of percentages of actin-, vimentin-, lamin-specific CD8+T-cells (HLA-A2-restricted tests) to further characterize autoimmune response, we performed our main analysis in a subsample of HLA-A2 patients making the whole study original compared to the previously published [<xref rid="pone.0169164.ref024" ref-type="bibr">24</xref>]. The mediating role of INF-α has been investigated and underlying activation processes were defined as latent variables, i.e. CMV-induced-, autoimmune-induced immune responses, microbial translocation and INF-α. The best explanation model for the available data was identified from goodness-of-fit-criteria.</p><p>SEM final results revealed a direct positive significant effect of CMV-induced response and IFN-α genes on chronic immune activation. In addition, the approach might suggest an indirect effect of autoimmune-induced response on chronic immune activation through IFN-α genes. These findings were consistent in various sensitivity analyses performed in HLA-A*0201 positive patients and in the overall population. Results in the overall population could be explained by the fact that Quantiferon-CMV positivity and positivity of anti-nuclear antibody titers may not be accurate enough for reflecting respectively the CMV-induced response and the autoimmune-induced response leading to a dilution bias and underlying the need for an integrative analysis using all available information.</p><p>Particularly, all analyses highlighted the significant effect of IFN-α genes on chronic immune activation, accounting for the evidence of the involvement of the IFN-α pathway reported in chronic immune activation in successfully treated HIV-1-infected patients [<xref rid="pone.0169164.ref010" ref-type="bibr">10</xref>–<xref rid="pone.0169164.ref012" ref-type="bibr">12</xref>].</p><p>We confirmed effect of the CMV-induced response on chronic immune activation [<xref rid="pone.0169164.ref024" ref-type="bibr">24</xref>]. Our findings are in agreement with former studies highlighting the involvement of CMV in immunosenescence and chronic HIV infection [<xref rid="pone.0169164.ref045" ref-type="bibr">45</xref>–<xref rid="pone.0169164.ref049" ref-type="bibr">49</xref>]. According to this new analysis, the effect of CMV-induced response on CD8+ T-cell activation was not mediated by the IFN-α- genes measured in the present study (ADAR, ISG15, IFIT1, Mx1 and OAS1). The direct effect of CMV-induced response on chronic immune activation was revealed through the measurements of Quantiferon and pp-65 ELISPOT. CMV-tetramer-pp65-specific-CD8+ T-cells were not contributive to define the CMV-induced immune response latent variable (p = 0.7049). Stone et al [<xref rid="pone.0169164.ref050" ref-type="bibr">50</xref>] reported that percentages of CMV-pp65-specific-CD8+ T-cells were similar in HIV patients with stable undetectable HIV viremia due to highly active antiretroviral therapy and healthy controls. Taking together, these findings indicate that CMV-pp65-specific-CD8+ T-cells in circulating blood may not reflect accurately the status of the response against CMV and thus, question the relevance of measuring them at distance of the primo-infection or of reactivations in blood. Indeed, anti-CMV response may primarily rely on in situ tissue resident memory T-cells [<xref rid="pone.0169164.ref051" ref-type="bibr">51</xref>] which do not recirculate in blood but rather stay in barrier tissue such as lung, skin or intestine. Therefore the lack of correlation between tetramer positive T-cells and CMV does not mean they do not exist but that they are not circulating in the blood we were looking at.</p><p>Interestingly, our results might suggest an indirect effect of autoimmune-induced response on chronic immune activation mediated through IFN-α genes. Even in the absence of clinical events, low level biological signals may have consequences such as T-cell activation. The effect of autoimmune-induced immune response on IFN-α latent variable was revealed through the measurements of actin-, vimentin-, lamin-specific CD8+T-cells illustrating the important role of caspase-cleaved apoptotic self-antigens in immune activation during chronic HIV infection, as suggested by Rawson et al [<xref rid="pone.0169164.ref023" ref-type="bibr">23</xref>]. Of note, the percentage of vimentin-specific CD8+T-cells contributed the most to define the autoimmune-induced response latent variable. Moreover, the use of a latent variable seemed particularly relevant regarding the low levels of self-antigen-specific T cells in this study. Indeed, anti-nuclear antibodies did not contribute to the definition of the autoimmune-induced response latent variable and were dropped from the final model. The latter result reveals the need to measure biomarkers more relevant than anti-nuclear antibodies when studying autoimmune-induced response in chronic HIV [<xref rid="pone.0169164.ref023" ref-type="bibr">23</xref>]. Altogether, these findings might provide valuable insights in hypotheses regarding the role of autoimmunity, as there were very few reports in the literature studying auto-immunity in HIV infected patients [<xref rid="pone.0169164.ref022" ref-type="bibr">22</xref>]. However, these findings need to be interpreted carefully because i) there was no direct significant association of autoimmune-induced response with chronic immune activation, ii) even though the use of a latent variable seemed particularly relevant for defining the autoimmune-induced immune response, the very low levels of self-antigen-specific T cells in this study may raise concerns about the existence of a biological autoimmunity affecting immune activation sufficiently.</p><p>Previous studies have demonstrated that bacterial translocation (measured by sCD14 and 16SrDNA) was associated with immune activation. In this work, biomarkers of microbial translocation were not associated with chronic immune activation in univariable analysis and in multivariable analysis performed in our previous work [<xref rid="pone.0169164.ref024" ref-type="bibr">24</xref>]. This could be explained by the very specific characteristics of our population: median duration of viral suppression 5.8 years (IQR: 4.4; 7.7), median duration of ART exposure 10.5 years (5.9; 13.4), with very low levels of microbial translocation: median sCD14 μg/mL 1.8 (1.6; 1.9), median 16S rDNA log10 copies/mL 3.3 (3.1; 3.4) (data for HLA-A2 patients). Moreover, Abad-Fernandez M et al did not find any correlation between sCD14 or bacterial rDNA with activated CD8 T cells in long-term suppressed HIV-1-infected individuals [<xref rid="pone.0169164.ref052" ref-type="bibr">52</xref>].</p><p>Our study also had some limitations. First, the ACTHIV study is a cross-sectional study nested in the ANRS CO3 Aquitaine Cohort not allowing to infer the temporality and causal direction of the observed associations. Enrolled patients initiated antiretroviral therapy between 2005 and 2008 and were virologically suppressed for at least two years. Median duration of viral suppression was 6.1 years (4; 8.5) in the overall population and 5.8 years (4.4; 7.7) in the HLA-A2 population. We had no other data on persistent ongoing HIV replication. This is a clear limitation of the study. Second, even though our results were confirmed in all sensitivity analyses, the main complete case integrative analysis was performed in 66% (57/87) HLA-A*0201 positive patients, accounting for a potential lack of power that may have affected results on the effects of autoimmunity and SEM model identifiability (generally the greater the model complexity, the more observations are needed), questioning the need for additional methods such as multiple imputation. Third, we had only five quantitative gene expression measurements of IFN-α-stimulated-genes. Some studies report more specific pathways of IFN-α that could be involved in HIV chronic immune activation, i.e. IFN-α MYD88 dependent pathway and IFN-α MYD88 independent pathway [<xref rid="pone.0169164.ref053" ref-type="bibr">53</xref>–<xref rid="pone.0169164.ref055" ref-type="bibr">55</xref>]. Additional data on these pathways may have helped to better characterize the potential indirect effects of CMV or microbial translocation on chronic immune activation. Further research is needed and could be implemented in a longitudinal framework, allowing the inference of causal relationships. Combining appropriate biomarkers and adequate quantitative gene expression measurements, including IFN-α, using structural equation modelling could also be applied in longitudinal data analysis [<xref rid="pone.0169164.ref056" ref-type="bibr">56</xref>]. Indeed, ongoing efforts are made to identify and better characterize the IFN-α-stimulated-genes landscape [<xref rid="pone.0169164.ref057" ref-type="bibr">57</xref>, <xref rid="pone.0169164.ref058" ref-type="bibr">58</xref>].</p><p>We focused on chronic immune T-cell activation, proven to be a leading factor for HIV disease progression but we acknowledge the importance of other markers including B cells, Natural Killer cells, dendritic cells, monocytes, macrophages and neutrophils of the inflammation cascade, as well as of the endothelium and the coagulation system in immune activation [<xref rid="pone.0169164.ref059" ref-type="bibr">59</xref>]. We do feel that this study additionally illustrates the potential of latent variables, in modern immunology, to assess biological processes that cannot be measured directly.</p><p>In this study, we used structural equation modeling analysis to determine whether our hypothesized theoretical model (<xref ref-type="fig" rid="pone.0169164.g001">Fig 1</xref>) was supported by sample data to reflect our theory in chronic HIV. The simplest and best explanation model for available data maintaining the hypothesized general pathway (<xref ref-type="fig" rid="pone.0169164.g003">Fig 3</xref>) passed the goodness-of-fit tests. As estimation techniques, modeling capacities and breadth of SEM applications are expanding rapidly, beyond social sciences, to embrace multiple fields as modern immunology [<xref rid="pone.0169164.ref041" ref-type="bibr">41</xref>, <xref rid="pone.0169164.ref043" ref-type="bibr">43</xref>, <xref rid="pone.0169164.ref044" ref-type="bibr">44</xref>], endocrinology [<xref rid="pone.0169164.ref060" ref-type="bibr">60</xref>], cancer [<xref rid="pone.0169164.ref061" ref-type="bibr">61</xref>, <xref rid="pone.0169164.ref062" ref-type="bibr">62</xref>] or environment [<xref rid="pone.0169164.ref063" ref-type="bibr">63</xref>], we would like to warn readers about SEM results that have to be interpreted carefully. Indeed, because a model fits the data well does not mean that the model reflects perfectly the reality. Other statistical plausible models could have fitted the data [<xref rid="pone.0169164.ref029" ref-type="bibr">29</xref>] but the advantage of SEM is to consider prior knowledge limiting the number of analyses to run and multiple testing. This is why, beyond the need to report a detailed statistical justification of the model (specification, identifiability, estimation, goodness of fit) [<xref rid="pone.0169164.ref029" ref-type="bibr">29</xref>], we highlight the importance to integrate the expertise of specialists in the field when defining the testable pathways and when designing the initial hypothesized theoretical model. Particularly, carefully conducted SEM analyses with a minimal number of weak assumptions provide an important supplement to standard regression results (i.e. mediation, measurement error in explanatory variables). In conclusion, this study not only provides valuable insights into underlying mechanisms of chronic immune activation in HIV-infection but also illustrates the potential of SEM for handling multiple relationships, understanding epidemiological processes using observational data. Furthermore, the results clearly highlight the need for integrative analyses to make the most out of immunological data [<xref rid="pone.0169164.ref064" ref-type="bibr">64</xref>, <xref rid="pone.0169164.ref065" ref-type="bibr">65</xref>]. Using this flexible framework, the role of CMV-immune response on the CD8+ T cell activation has been confirmed, encouraging intervention against CMV in successfully treated HIV-1-infected patients [<xref rid="pone.0169164.ref021" ref-type="bibr">21</xref>, <xref rid="pone.0169164.ref066" ref-type="bibr">66</xref>]. Our results further add to the growing body of evidence that IFN-α is involved in chronic immune activation. The signal found for the potential role of auto-immunity response in chronic immune activation requires further investigations.</p></sec><sec sec-type="supplementary-material" id="sec030"><title>Supporting Information</title><supplementary-material content-type="local-data" id="pone.0169164.s001"><label>S1 Table</label><caption><title>Univariable and multivariable linear regressions of HLA-DR+/CD38+CD8+ T-cells (log10%).</title><p>ACTHIV study.</p><p>(DOC)</p></caption><media xlink:href="pone.0169164.s001.doc"><caption><p>Click here for additional data file.</p></caption></media></supplementary-material><supplementary-material content-type="local-data" id="pone.0169164.s002"><label>S2 Table</label><caption><title>Effects of cytomegalovirus-, autoimmune-induced immune responses on chronic immune activation (HLA-DR+/CD38+CD8+ T-cells log10%), adjusted for age, CD4+ T-cell count and regulatory T-cell count.</title><p>HLA-A*0201 positive patients (n = 57), ACTHIV study.</p><p>(DOCX)</p></caption><media xlink:href="pone.0169164.s002.docx"><caption><p>Click here for additional data file.</p></caption></media></supplementary-material><supplementary-material content-type="local-data" id="pone.0169164.s003"><label>S3 Table</label><caption><title>Effects of cytomegalovirus-, autoimmune-induced immune responses on chronic immune activation (% HLA-DR+/CD8+), adjusted for age, CD4+ T-cell count and regulatory T-cell count.</title><p>HLA-A*0201 positive patients (n = 57), ACTHIV study.</p><p>(DOCX)</p></caption><media xlink:href="pone.0169164.s003.docx"><caption><p>Click here for additional data file.</p></caption></media></supplementary-material><supplementary-material content-type="local-data" id="pone.0169164.s004"><label>S4 Table</label><caption><title>Effects of Quantiferon-CMV positivity & positive anti-nuclear antibody titers on chronic immune activation (% HLA-DR+/CD38+CD8+), adjusted for age, CD4+ T-cell count and regulatory T-cell count (n = 142), ACTHIV study.</title><p>(DOCX)</p></caption><media xlink:href="pone.0169164.s004.docx"><caption><p>Click here for additional data file.</p></caption></media></supplementary-material></sec></body><back><ack><p>We thank all patients for their participation. We thank the technicians from the immunologic routine laboratory of the CHU Bordeaux for excellent technical assistance.</p><sec id="sec031"><title>Contributors</title><p><bold>Members of the ANRS CO3 Aquitaine cohort study group are: Coordination:</bold> F. Bonnet, F. Dabis; <bold>Scientific committee:</bold> F. Bonnet, S. Bouchet, D. Breilh, G. Chêne, F. Dabis, M. Dupon, H. Fleury, V. Gaborieau, D. Lacoste, D. Malvy, P. Mercié, P. Morlat, D. Neau, I. Pellegrin, JL. Pellegrin, S. Reigadas, S. Tchamgoué; <bold>Epidemiology and Methodology:</bold> M. Bruyand, G. Chêne, F. Dabis, C. Fagard, S. Lawson-Ayayi, L. Richert, R. Thiébaut, L. Wittkop; <bold>Infectious Diseases and Internal Medicine:</bold> K. André, F. Bonnet, N. Bernard, O. Caubet, L. Caunègre, C. Cazanave, J. Ceccaldi, I. Chossat, C. Courtault, FA. Dauchy, S. De Witte, D. Dondia, M. Dupon, A. Dupont, P. Duffau, H. Dutronc, S. Farbos, I. Faure, V. Gaborieau, Y. Gerard, C. Greib, M. Hessamfar-Joseph, Y. Imbert, D. Lacoste, P. Lataste, E. Lazaro, D. Malvy, J. Marie, M. Mechain, JP. Meraud, P. Mercié, E. Monlun, P. Morlat, D. Neau, A. Ochoa, JL. Pellegrin, M. Pillot-Debelleix, T. Pistone, I. Raymond, MC. Receveur, P. Rispal, L. Sorin, S. Tchamgoué, C. Valette, MA. Vandenhende, MO. Vareil, JF. Viallard, H. Wille, G. Wirth; <bold>Immunology:</bold> JF. Moreau, I. Pellegrin; <bold>Virology:</bold> H. Fleury, ME. Lafon, S. Reigadas, P. Trimoulet.</p><p><bold>Pharmacology</bold>: S. Bouchet, D. Breilh, F. Haramburu, G. Miremont-Salamé; <bold>Data collection, Project Management and Statistical Analyses:</bold> MJ. Blaizeau, I. Crespel, M. Decoin, S. Delveaux, F. Diarra, C. D’Ivernois, C. Hanappier, D. Lacoste, S. Lawson-Ayayi, O. Leleux, F. Le Marec, E. Lenaud, J. Mourali, E. Pernot, A. Pougetoux, B. Uwamaliya-Nziyumvira, A. Tsaranazy, A. Valdes; <bold>IT department and eCRF development:</bold> V. Conte, I. Louis, G. Palmer, V. Sapparrart, D. Touchard; <bold>Centre for Biological Ressources-CHU de Bordeaux:</bold> C. Le Scanf-Terrien, I. Pellegrin.</p></sec></ack><ref-list><title>References</title><ref id="pone.0169164.ref001"><label>1</label><mixed-citation publication-type="journal"><name><surname>Deeks</surname><given-names>SG</given-names></name>, <name><surname>Kitchen</surname><given-names>CM</given-names></name>, <name><surname>Liu</surname><given-names>L</given-names></name>, <name><surname>Guo</surname><given-names>H</given-names></name>, <name><surname>Gascon</surname><given-names>R</given-names></name>, <name><surname>Narvaez</surname><given-names>AB</given-names></name>, <etal>et al</etal><article-title>Immune activation set point during early HIV infection predicts subsequent CD4+ T-cell changes independent of viral load</article-title>. <source>Blood</source><year>2004</year><month>8</month><day>15</day>;<volume>104</volume>(<issue>4</issue>):<fpage>942</fpage>–<lpage>7</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1182/blood-2003-09-3333">10.1182/blood-2003-09-3333</ext-link></comment><pub-id pub-id-type="pmid">15117761</pub-id></mixed-citation></ref><ref id="pone.0169164.ref002"><label>2</label><mixed-citation publication-type="journal"><name><surname>Sodora</surname><given-names>DL</given-names></name>, <name><surname>Silvestri</surname><given-names>G</given-names></name>. <article-title>Immune activation and AIDS pathogenesis</article-title>. <source>AIDS</source><year>2008</year><month>2</month><day>19</day>;<volume>22</volume>(<issue>4</issue>):<fpage>439</fpage>–<lpage>46</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1097/QAD.0b013e3282f2dbe7">10.1097/QAD.0b013e3282f2dbe7</ext-link></comment><pub-id pub-id-type="pmid">18301056</pub-id></mixed-citation></ref><ref id="pone.0169164.ref003"><label>3</label><mixed-citation publication-type="journal"><name><surname>Hsue</surname><given-names>PY</given-names></name>, <name><surname>Deeks</surname><given-names>SG</given-names></name>, <name><surname>Hunt</surname><given-names>PW</given-names></name>. <article-title>Immunologic basis of cardiovascular disease in HIV-infected adults</article-title>. <source>J Infect Dis</source><year>2012</year><month>6</month>;<volume>205</volume><issue>Suppl 3</issue>:<fpage>S375</fpage>–<lpage>82</lpage>.<pub-id pub-id-type="pmid">22577211</pub-id></mixed-citation></ref><ref id="pone.0169164.ref004"><label>4</label><mixed-citation publication-type="journal"><name><surname>Plaeger</surname><given-names>SF</given-names></name>, <name><surname>Collins</surname><given-names>BS</given-names></name>, <name><surname>Musib</surname><given-names>R</given-names></name>, <name><surname>Deeks</surname><given-names>SG</given-names></name>, <name><surname>Read</surname><given-names>S</given-names></name>, <name><surname>Embry</surname><given-names>A</given-names></name>. <article-title>Immune activation in the pathogenesis of treated chronic HIV disease: a workshop summary</article-title>. <source>AIDS Res Hum Retroviruses May</source><year>2012</year>;<volume>28</volume>(<issue>5</issue>):<fpage>469</fpage>–<lpage>77</lpage>.</mixed-citation></ref><ref id="pone.0169164.ref005"><label>5</label><mixed-citation publication-type="journal"><name><surname>Tebas</surname><given-names>P</given-names></name>, <name><surname>Henry</surname><given-names>WK</given-names></name>, <name><surname>Matining</surname><given-names>R</given-names></name>, <name><surname>Weng-Cherng</surname><given-names>D</given-names></name>, <name><surname>Schmitz</surname><given-names>J</given-names></name>, <name><surname>Valdez</surname><given-names>H</given-names></name>, <etal>et al</etal><article-title>Metabolic and immune activation effects of treatment interruption in chronic HIV-1 infection: implications for cardiovascular risk</article-title>. <source>PloS One</source><year>2008</year>;<volume>3</volume>(<issue>4</issue>):<fpage>e2021</fpage><comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1371/journal.pone.0002021">10.1371/journal.pone.0002021</ext-link></comment><pub-id pub-id-type="pmid">18431498</pub-id></mixed-citation></ref><ref id="pone.0169164.ref006"><label>6</label><mixed-citation publication-type="journal"><name><surname>Nasi</surname><given-names>M</given-names></name>, <name><surname>De Biasi</surname><given-names>S</given-names></name>, <name><surname>Gibellini</surname><given-names>L</given-names></name>, <name><surname>Bianchini</surname><given-names>E</given-names></name>, <name><surname>Pecorini</surname><given-names>S</given-names></name>, <name><surname>Bacca</surname><given-names>V</given-names></name>, <etal>et al</etal><article-title>Aging and inflammation in patients with HIV infection</article-title>. <source>Clin Exp Immunol</source><year>2016</year><month>5</month><day>20</day> [Epub].</mixed-citation></ref><ref id="pone.0169164.ref007"><label>7</label><mixed-citation publication-type="journal"><name><surname>Teijaro</surname><given-names>JR</given-names></name>, <name><surname>Ng</surname><given-names>C</given-names></name>, <name><surname>Lee</surname><given-names>AM</given-names></name>, <name><surname>Sullivan</surname><given-names>BM</given-names></name>, <name><surname>Sheehan</surname><given-names>KC</given-names></name>, <name><surname>Welch</surname><given-names>M</given-names></name>, <etal>et al</etal><article-title>Persistent LCMV infection is controlled by blockade of type I interferon signaling</article-title>. <source>Science</source><year>2013</year><month>4</month><day>12</day>;<volume>340</volume>(<issue>6129</issue>):<fpage>207</fpage>–<lpage>11</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1126/science.1235214">10.1126/science.1235214</ext-link></comment><pub-id pub-id-type="pmid">23580529</pub-id></mixed-citation></ref><ref id="pone.0169164.ref008"><label>8</label><mixed-citation publication-type="journal"><name><surname>Wilson</surname><given-names>EB</given-names></name>, <name><surname>Yamada</surname><given-names>DH</given-names></name>, <name><surname>Elsaesser</surname><given-names>H</given-names></name>, <name><surname>Herskovitz</surname><given-names>J</given-names></name>, <name><surname>Deng</surname><given-names>J</given-names></name>, <name><surname>Cheng</surname><given-names>G</given-names></name>, <etal>et al</etal><article-title>Blockade of chronic type I interferon signaling to control persistent LCMV infection</article-title>. <source>Science</source><year>2013</year><month>4</month><day>12</day>;<volume>340</volume>(<issue>6129</issue>):<fpage>202</fpage>–<lpage>7</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1126/science.1235208">10.1126/science.1235208</ext-link></comment><pub-id pub-id-type="pmid">23580528</pub-id></mixed-citation></ref><ref id="pone.0169164.ref009"><label>9</label><mixed-citation publication-type="journal"><name><surname>Zhou</surname><given-names>Y</given-names></name>, <name><surname>Zhang</surname><given-names>Y</given-names></name>, <name><surname>Moorman</surname><given-names>JP</given-names></name>, <name><surname>Yao</surname><given-names>ZQ</given-names></name>, <name><surname>Jia</surname><given-names>ZS</given-names></name>. <article-title>Viral (hepatitis C virus, hepatitis B virus, HIV) persistence and immune homeostasis</article-title>. <source>Immunology</source><year>2014</year><month>11</month>;<volume>143</volume>(<issue>3</issue>):<fpage>319</fpage>–<lpage>30</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1111/imm.12349">10.1111/imm.12349</ext-link></comment><pub-id pub-id-type="pmid">24965611</pub-id></mixed-citation></ref><ref id="pone.0169164.ref010"><label>10</label><mixed-citation publication-type="journal"><name><surname>Acchioni</surname><given-names>C</given-names></name>, <name><surname>Marsili</surname><given-names>G</given-names></name>, <name><surname>Perrotti</surname><given-names>E</given-names></name>, <name><surname>Remoli</surname><given-names>AL</given-names></name>, <name><surname>Sgarbanti</surname><given-names>M</given-names></name>, <name><surname>Battistini</surname><given-names>A</given-names></name>. <article-title>Type I IFN--a blunt spear in fighting HIV-1 infection</article-title>. <source>Cytokine Growth Factor Rev</source><year>2015</year><month>4</month>;<volume>26</volume>(<issue>2</issue>):<fpage>143</fpage>–<lpage>58</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1016/j.cytogfr.2014.10.004">10.1016/j.cytogfr.2014.10.004</ext-link></comment><pub-id pub-id-type="pmid">25466629</pub-id></mixed-citation></ref><ref id="pone.0169164.ref011"><label>11</label><mixed-citation publication-type="journal"><name><surname>Cha</surname><given-names>L</given-names></name>, <name><surname>Berry</surname><given-names>CM</given-names></name>, <name><surname>Nolan</surname><given-names>D</given-names></name>, <name><surname>Castley</surname><given-names>A</given-names></name>, <name><surname>Fernandez</surname><given-names>S</given-names></name>, <name><surname>French</surname><given-names>MA</given-names></name>. <article-title>Interferon-alpha, immune activation and immune dysfunction in treated HIV infection</article-title>. <source>Clin Transl Immunology</source><year>2014</year><month>2</month><day>28</day>;<volume>3</volume>(<issue>2</issue>):<fpage>e10</fpage><comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1038/cti.2014.1">10.1038/cti.2014.1</ext-link></comment><pub-id pub-id-type="pmid">25505958</pub-id></mixed-citation></ref><ref id="pone.0169164.ref012"><label>12</label><mixed-citation publication-type="journal"><name><surname>Ries</surname><given-names>M</given-names></name>, <name><surname>Pritschet</surname><given-names>K</given-names></name>, <name><surname>Schmidt</surname><given-names>B</given-names></name>. <article-title>Blocking type I interferon production: a new therapeutic option to reduce the HIV-1-induced immune activation</article-title>. <source>Clin Dev Immunol</source><year>2012</year>;<volume>2012</volume>:<fpage>534929</fpage><comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1155/2012/534929">10.1155/2012/534929</ext-link></comment><pub-id pub-id-type="pmid">22203858</pub-id></mixed-citation></ref><ref id="pone.0169164.ref013"><label>13</label><mixed-citation publication-type="journal"><name><surname>Rajasuriar</surname><given-names>R</given-names></name>, <name><surname>Khoury</surname><given-names>G</given-names></name>, <name><surname>Kamarulzaman</surname><given-names>A</given-names></name>, <name><surname>French</surname><given-names>MA</given-names></name>, <name><surname>Cameron</surname><given-names>PU</given-names></name>, <name><surname>Lewin</surname><given-names>SR</given-names></name>. <article-title>Persistent immune activation in chronic HIV infection: do any interventions work?</article-title><source>AIDS</source><year>2013</year><month>5</month><day>15</day>;<volume>27</volume>(<issue>8</issue>):<fpage>1199</fpage>–<lpage>208</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1097/QAD.0b013e32835ecb8b">10.1097/QAD.0b013e32835ecb8b</ext-link></comment><pub-id pub-id-type="pmid">23324661</pub-id></mixed-citation></ref><ref id="pone.0169164.ref014"><label>14</label><mixed-citation publication-type="journal"><name><surname>Appay</surname><given-names>V</given-names></name>, <name><surname>Sauce</surname><given-names>D</given-names></name>. <article-title>Immune activation and inflammation in HIV-1 infection: causes and consequences</article-title>. <source>J Pathol</source><year>2008</year><month>1</month>;<volume>214</volume>(<issue>2</issue>):<fpage>231</fpage>–<lpage>41</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1002/path.2276">10.1002/path.2276</ext-link></comment><pub-id pub-id-type="pmid">18161758</pub-id></mixed-citation></ref><ref id="pone.0169164.ref015"><label>15</label><mixed-citation publication-type="journal"><name><surname>Brenchley</surname><given-names>JM</given-names></name>, <name><surname>Price</surname><given-names>DA</given-names></name>, <name><surname>Schacker</surname><given-names>TW</given-names></name>, <name><surname>Asher</surname><given-names>TE</given-names></name>, <name><surname>Silvestri</surname><given-names>G</given-names></name>, <name><surname>Rao</surname><given-names>S</given-names></name>, <etal>et al</etal><article-title>Microbial translocation is a cause of systemic immune activation in chronic HIV infection</article-title>. <source>Nat Med</source><year>2006</year><month>12</month>;<volume>12</volume>(<issue>12</issue>):<fpage>1365</fpage>–<lpage>71</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1038/nm1511">10.1038/nm1511</ext-link></comment><pub-id pub-id-type="pmid">17115046</pub-id></mixed-citation></ref><ref id="pone.0169164.ref016"><label>16</label><mixed-citation publication-type="journal"><name><surname>Klatt</surname><given-names>NR</given-names></name>, <name><surname>Funderburg</surname><given-names>NT</given-names></name>, <name><surname>Brenchley</surname><given-names>JM</given-names></name>. <article-title>Microbial translocation, immune activation, and HIV disease</article-title>. <source>Trends Microbiol</source><year>2013</year><month>1</month>;<volume>21</volume>(<issue>1</issue>):<fpage>6</fpage>–<lpage>13</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1016/j.tim.2012.09.001">10.1016/j.tim.2012.09.001</ext-link></comment><pub-id pub-id-type="pmid">23062765</pub-id></mixed-citation></ref><ref id="pone.0169164.ref017"><label>17</label><mixed-citation publication-type="journal"><name><surname>Jiang</surname><given-names>W</given-names></name>, <name><surname>Lederman</surname><given-names>MM</given-names></name>, <name><surname>Hunt</surname><given-names>P</given-names></name>, <name><surname>Sieg</surname><given-names>SF</given-names></name>, <name><surname>Haley</surname><given-names>K</given-names></name>, <name><surname>Rodriguez</surname><given-names>B</given-names></name>, <etal>et al</etal><article-title>Plasma Levels of Bacterial DNA Correlate with Immune Activation and the Magnitude of Immune Restoration in Persons with Antiretroviral-Treated HIV Infection</article-title>. <source>J Infect Dis</source><year>1999</year>(<issue>8</issue>):<fpage>1177</fpage>–<lpage>85</lpage>.<pub-id pub-id-type="pmid">10479146</pub-id></mixed-citation></ref><ref id="pone.0169164.ref018"><label>18</label><mixed-citation publication-type="journal"><name><surname>Appay</surname><given-names>V</given-names></name>, <name><surname>Fastenackels</surname><given-names>S</given-names></name>, <name><surname>Katlama</surname><given-names>C</given-names></name>, <name><surname>Ait-Mohand</surname><given-names>H</given-names></name>, <name><surname>Schneider</surname><given-names>L</given-names></name>, <name><surname>Guihot</surname><given-names>A</given-names></name>, <etal>et al</etal><article-title>Old age and anti-cytomegalovirus immunity are associated with altered T-cell reconstitution in HIV-1-infected patients</article-title>. <source>AIDS</source><year>2011</year><month>9</month><day>24</day>;<volume>25</volume>(<issue>15</issue>):<fpage>1813</fpage>–<lpage>22</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1097/QAD.0b013e32834640e6">10.1097/QAD.0b013e32834640e6</ext-link></comment><pub-id pub-id-type="pmid">21412126</pub-id></mixed-citation></ref><ref id="pone.0169164.ref019"><label>19</label><mixed-citation publication-type="journal"><name><surname>Hsue</surname><given-names>PY</given-names></name>, <name><surname>Hunt</surname><given-names>PW</given-names></name>, <name><surname>Sinclair</surname><given-names>E</given-names></name>, <name><surname>Bredt</surname><given-names>B</given-names></name>, <name><surname>Franklin</surname><given-names>A</given-names></name>, <name><surname>Killian</surname><given-names>M</given-names></name>, <etal>et al</etal><article-title>Increased carotid intima-media thickness in HIV patients is associated with increased cytomegalovirus-specific T-cell responses</article-title>. <source>AIDS</source><year>2006</year>;<volume>20</volume>:<fpage>2275</fpage>–<lpage>2283</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1097/QAD.0b013e3280108704">10.1097/QAD.0b013e3280108704</ext-link></comment><pub-id pub-id-type="pmid">17117013</pub-id></mixed-citation></ref><ref id="pone.0169164.ref020"><label>20</label><mixed-citation publication-type="journal"><name><surname>Parrinello</surname><given-names>CM</given-names></name>, <name><surname>Sinclair</surname><given-names>E</given-names></name>, <name><surname>Landay</surname><given-names>AL</given-names></name>, <name><surname>Lurain</surname><given-names>N</given-names></name>, <name><surname>Sharrett</surname><given-names>AR</given-names></name>, <name><surname>Gange</surname><given-names>SJ</given-names></name>, <etal>et al</etal><article-title>Cytomegalovirus immunoglobulin G antibody is associated with subclinical carotid artery disease among HIV-infected women</article-title>. <source>J Infect Dis</source>. <year>2012</year>;<volume>205</volume>:<fpage>1788</fpage>–<lpage>1796</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1093/infdis/jis276">10.1093/infdis/jis276</ext-link></comment><pub-id pub-id-type="pmid">22492856</pub-id></mixed-citation></ref><ref id="pone.0169164.ref021"><label>21</label><mixed-citation publication-type="journal"><name><surname>Hunt</surname><given-names>PW</given-names></name>, <name><surname>Martin</surname><given-names>JN</given-names></name>, <name><surname>Sinclair</surname><given-names>E</given-names></name>, <name><surname>Epling</surname><given-names>L</given-names></name>, <name><surname>Teague</surname><given-names>J</given-names></name>, <name><surname>Jacobson</surname><given-names>MA</given-names></name>, <etal>et al</etal><article-title>Valganciclovir reduces T cell activation in HIV-infected individuals with incomplete CD4+ T cell recovery on antiretroviral therapy</article-title>. <source>J Infect Dis</source><year>2011</year><month>5</month><day>15</day>;<volume>203</volume>(<issue>10</issue>):<fpage>1474</fpage>–<lpage>83</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1093/infdis/jir060">10.1093/infdis/jir060</ext-link></comment><pub-id pub-id-type="pmid">21502083</pub-id></mixed-citation></ref><ref id="pone.0169164.ref022"><label>22</label><mixed-citation publication-type="journal"><name><surname>Stratton</surname><given-names>R</given-names></name>, <name><surname>Slapak</surname><given-names>G</given-names></name>, <name><surname>Mahungu</surname><given-names>T</given-names></name>, <name><surname>Kinloch-de Loes</surname><given-names>S</given-names></name>. <article-title>Autoimmunity and HIV</article-title>. <source>Curr Opin Infect Dis</source><year>2009</year><month>2</month>;<volume>22</volume>(<issue>1</issue>):<fpage>49</fpage>–<lpage>56</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1097/QCO.0b013e3283210006">10.1097/QCO.0b013e3283210006</ext-link></comment><pub-id pub-id-type="pmid">19532080</pub-id></mixed-citation></ref><ref id="pone.0169164.ref023"><label>23</label><mixed-citation publication-type="journal"><name><surname>Rawson</surname><given-names>PM</given-names></name>, <name><surname>Molette</surname><given-names>C</given-names></name>, <name><surname>Videtta</surname><given-names>M</given-names></name>, <name><surname>Altieri</surname><given-names>L</given-names></name>, <name><surname>Franceschini</surname><given-names>D</given-names></name>, <name><surname>Donato</surname><given-names>T</given-names></name>, <etal>et al</etal><article-title>Cross-presentation of caspase-cleaved apoptotic self antigens in HIV infection</article-title>. <source>Nat Med</source><year>2007</year><month>12</month>;<volume>13</volume>(<issue>12</issue>):<fpage>1431</fpage>–<lpage>9</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1038/nm1679">10.1038/nm1679</ext-link></comment><pub-id pub-id-type="pmid">18026114</pub-id></mixed-citation></ref><ref id="pone.0169164.ref024"><label>24</label><mixed-citation publication-type="journal"><name><surname>Wittkop</surname><given-names>L</given-names></name>, <name><surname>Bitard</surname><given-names>J</given-names></name>, <name><surname>Lazaro</surname><given-names>E</given-names></name>, <name><surname>Neau</surname><given-names>D</given-names></name>, <name><surname>Bonnet</surname><given-names>F</given-names></name>, <name><surname>Mercie</surname><given-names>P</given-names></name>, <etal>et al</etal><article-title>Effect of cytomegalovirus-induced immune response, self antigen-induced immune response, and microbial translocation on chronic immune activation in successfully treated HIV type 1-infected patients: the ANRS CO3 Aquitaine Cohort</article-title>. <source>J Infect Dis</source><year>2013</year><month>2</month><day>15</day>;<volume>207</volume>(<issue>4</issue>):<fpage>622-</fpage><comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1093/infdis/jis732">10.1093/infdis/jis732</ext-link></comment><pub-id pub-id-type="pmid">23204178</pub-id></mixed-citation></ref><ref id="pone.0169164.ref025"><label>25</label><mixed-citation publication-type="journal"><name><surname>Banchereau</surname><given-names>J</given-names></name>, <name><surname>Pascual</surname><given-names>V</given-names></name>. <article-title>Type I interferon in systemic lupus erythematosus and other autoimmune diseases</article-title>. <source>Immunity</source><year>2006</year><month>9</month>;<volume>25</volume>(<issue>3</issue>):<fpage>383</fpage>–<lpage>92</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1016/j.immuni.2006.08.010">10.1016/j.immuni.2006.08.010</ext-link></comment><pub-id pub-id-type="pmid">16979570</pub-id></mixed-citation></ref><ref id="pone.0169164.ref026"><label>26</label><mixed-citation publication-type="journal"><name><surname>Blanco</surname><given-names>P</given-names></name>, <name><surname>Palucka</surname><given-names>AK</given-names></name>, <name><surname>Pascual</surname><given-names>V</given-names></name>, <name><surname>Banchereau</surname><given-names>J</given-names></name>. <article-title>Dendritic cells and cytokines in human inflammatory and autoimmune diseases</article-title>. <source>Cytokine Growth Factor Rev</source><year>2008</year><month>2</month>;<volume>19</volume>(<issue>1</issue>):<fpage>41</fpage>–<lpage>52</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1016/j.cytogfr.2007.10.004">10.1016/j.cytogfr.2007.10.004</ext-link></comment><pub-id pub-id-type="pmid">18258476</pub-id></mixed-citation></ref><ref id="pone.0169164.ref027"><label>27</label><mixed-citation publication-type="journal"><name><surname>Kinloch</surname><given-names>AJ</given-names></name>, <name><surname>Chang</surname><given-names>A</given-names></name>, <name><surname>Ko</surname><given-names>K</given-names></name>, <name><surname>Henry Dunand</surname><given-names>CJ</given-names></name>, <name><surname>Henderson</surname><given-names>S</given-names></name>, <name><surname>Maienschein-Cline</surname><given-names>M</given-names></name>, <etal>et al</etal><article-title>Vimentin is a dominant target of in situ humoral immunity in human lupus tubulointerstitial nephritis</article-title>. <source>Arthritis Rheumatol</source><year>2014</year><month>12</month>;<volume>66</volume>(<issue>12</issue>):<fpage>3359</fpage>–<lpage>70</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1002/art.38888">10.1002/art.38888</ext-link></comment><pub-id pub-id-type="pmid">25306868</pub-id></mixed-citation></ref><ref id="pone.0169164.ref028"><label>28</label><mixed-citation publication-type="journal"><name><surname>Yang</surname><given-names>S</given-names></name>, <name><surname>Netterwald</surname><given-names>J</given-names></name>, <name><surname>Wang</surname><given-names>W</given-names></name>, <name><surname>Zhu</surname><given-names>H</given-names></name>. <article-title>Characterization of the elements and proteins responsible for interferon-stimulated gene induction by human cytomegalovirus</article-title>. <source>J Virol</source><year>2005</year><month>4</month>;<volume>79</volume>(<issue>8</issue>):<fpage>5027</fpage>–<lpage>34</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1128/JVI.79.8.5027-5034.2005">10.1128/JVI.79.8.5027-5034.2005</ext-link></comment><pub-id pub-id-type="pmid">15795288</pub-id></mixed-citation></ref><ref id="pone.0169164.ref029"><label>29</label><mixed-citation publication-type="journal"><name><surname>Sanchez</surname><given-names>BN</given-names></name>, <name><surname>Budtz-Jorgensen</surname><given-names>E</given-names></name>, <name><surname>Ryan</surname><given-names>LM</given-names></name>, and <name><surname>Hu</surname><given-names>H</given-names></name>. <article-title>Structural Equation Models: A Review With Applications to Environmental Epidemiology</article-title>. <source>JASA</source><year>2005</year>;<volume>100</volume>(<issue>472</issue>):<fpage>1443</fpage>–<lpage>55</lpage>.</mixed-citation></ref><ref id="pone.0169164.ref030"><label>30</label><mixed-citation publication-type="journal"><name><surname>Thiebaut</surname><given-names>R</given-names></name>, <name><surname>Morlat</surname><given-names>P</given-names></name>, <name><surname>Jacqmin-Gadda</surname><given-names>H</given-names></name>, <name><surname>Neau</surname><given-names>D</given-names></name>, <name><surname>Mercie</surname><given-names>P</given-names></name>, <name><surname>Dabis</surname><given-names>F</given-names></name>, <etal>et al</etal><article-title>Clinical progression of HIV-1 infection according to the viral response during the first year of antiretroviral treatment. Groupe d'Epidemiologie du SIDA en Aquitaine (GECSA)</article-title>. <source>AIDS</source><year>2000</year><month>5</month><day>26</day>;<volume>14</volume>(<issue>8</issue>):<fpage>971</fpage>–<lpage>8</lpage>. <pub-id pub-id-type="pmid">10853978</pub-id></mixed-citation></ref><ref id="pone.0169164.ref031"><label>31</label><mixed-citation publication-type="journal"><name><surname>Ivashkiv</surname><given-names>LB</given-names></name>, <name><surname>Donlin</surname><given-names>LT</given-names></name>. <article-title>Regulation of type I interferon responses</article-title>. <source>Nature reviews Immunology</source><year>2014</year><month>1</month>;<volume>14</volume>(<issue>1</issue>):<fpage>36</fpage>–<lpage>49</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1038/nri3581">10.1038/nri3581</ext-link></comment><pub-id pub-id-type="pmid">24362405</pub-id></mixed-citation></ref><ref id="pone.0169164.ref032"><label>32</label><mixed-citation publication-type="journal"><name><surname>Benito</surname><given-names>JM</given-names></name>, <name><surname>López</surname><given-names>M</given-names></name>, <name><surname>Lozano</surname><given-names>S</given-names></name>, <name><surname>Martinez</surname><given-names>P</given-names></name>, <name><surname>González-Lahoz</surname><given-names>J</given-names></name>, <name><surname>Soriano</surname><given-names>V</given-names></name>. <article-title>CD38 expression on CD8 T lymphocytes as a marker of residual virus replication in chronically HIV-infected patients receiving antiretroviral therapy</article-title>. <source>AIDS Res Hum Retroviruses</source><year>2004</year><month>2</month>;<volume>20</volume>(<issue>2</issue>):<fpage>227</fpage>–<lpage>33</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1089/088922204773004950">10.1089/088922204773004950</ext-link></comment><pub-id pub-id-type="pmid">15018711</pub-id></mixed-citation></ref><ref id="pone.0169164.ref033"><label>33</label><mixed-citation publication-type="journal"><name><surname>Blanco</surname><given-names>P</given-names></name>, <name><surname>Pitard</surname><given-names>V</given-names></name>, <name><surname>Viallard</surname><given-names>JF</given-names></name>, <name><surname>Taupin</surname><given-names>JL</given-names></name>, <name><surname>Pellegrin</surname><given-names>JL</given-names></name>, <name><surname>Moreau</surname><given-names>JF</given-names></name>. <article-title>Increase in activated CD8+ T lymphocytes expressing perforin and granzyme B correlates with disease activity in patients with systemic lupus erythematosus</article-title>. <source>Arthritis Rheum</source><volume>52</volume>, <fpage>201</fpage>–<lpage>11</lpage> (<year>2005</year>). <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1002/art.20745">10.1002/art.20745</ext-link></comment><pub-id pub-id-type="pmid">15641052</pub-id></mixed-citation></ref><ref id="pone.0169164.ref034"><label>34</label><mixed-citation publication-type="journal"><name><surname>Grace</surname><given-names>J B</given-names></name>, <name><surname>Schoolmaster</surname><given-names>DR</given-names></name>, <name><surname>Guntenspergen</surname><given-names>GR</given-names></name>, <name><surname>Little</surname><given-names>AM</given-names></name>, <name><surname>Mitchell</surname><given-names>BR</given-names></name>, <name><surname>Miller</surname><given-names>KM</given-names></name>, <etal>et al</etal><article-title>Guidelines for a graph-theoretic implementation of structural equation modeling</article-title>. <source>Ecosphere</source><year>2012</year>;<volume>3</volume>(<issue>8</issue>):<fpage>73</fpage>.</mixed-citation></ref><ref id="pone.0169164.ref035"><label>35</label><mixed-citation publication-type="journal"><name><surname>Chavance</surname><given-names>M</given-names></name>, <name><surname>Escolano</surname><given-names>S</given-names></name>, <name><surname>Romon</surname><given-names>M</given-names></name>, <name><surname>Basdevant</surname><given-names>A</given-names></name>, <name><surname>de Lauzon-Guillain</surname><given-names>B</given-names></name>, <name><surname>Charles</surname><given-names>MA</given-names></name>. <article-title>Latent variables and structural equation models for longitudinal relationships: an illustration in nutritional epidemiology</article-title>. <source>BMC Med Res Methodol</source><year>2010</year><month>4</month><day>30</day>;<volume>10</volume>:<fpage>37</fpage><comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1186/1471-2288-10-37">10.1186/1471-2288-10-37</ext-link></comment><pub-id pub-id-type="pmid">20433707</pub-id></mixed-citation></ref><ref id="pone.0169164.ref036"><label>36</label><mixed-citation publication-type="journal"><name><surname>Dahly</surname><given-names>DL</given-names></name>, <name><surname>Adair</surname><given-names>LS</given-names></name>, <name><surname>Bollen</surname><given-names>KA</given-names></name>. <article-title>A structural equation model of the developmental origins of blood pressure</article-title>. <source>Int J Epidemiol</source><year>2009</year><month>4</month>; <volume>38</volume>(<issue>2</issue>): <fpage>538</fpage>–<lpage>548</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1093/ije/dyn242">10.1093/ije/dyn242</ext-link></comment><pub-id pub-id-type="pmid">19039006</pub-id></mixed-citation></ref><ref id="pone.0169164.ref037"><label>37</label><mixed-citation publication-type="journal"><name><surname>Livak</surname><given-names>KJ</given-names></name>, <name><surname>Schmittgen</surname><given-names>TD</given-names></name>. <article-title>Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method</article-title>. <source>Methods</source><year>2001</year><month>12</month>;<volume>25</volume>(<issue>4</issue>):<fpage>402</fpage>–<lpage>8</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1006/meth.2001.1262">10.1006/meth.2001.1262</ext-link></comment><pub-id pub-id-type="pmid">11846609</pub-id></mixed-citation></ref><ref id="pone.0169164.ref038"><label>38</label><mixed-citation publication-type="journal"><name><surname>Holst</surname><given-names>KK</given-names></name><name><surname>J</surname><given-names>E</given-names></name>. <article-title>Linear latent variable models: the lava-package</article-title>. <source>Comput Stat</source><year>2013</year>;<volume>28</volume>:<fpage>1385</fpage>–<lpage>452</lpage>.</mixed-citation></ref><ref id="pone.0169164.ref039"><label>39</label><mixed-citation publication-type="book"><name><surname>Hoyle</surname><given-names>RH</given-names></name>. <source>Handbook of Structural Equation Modeling</source>. <publisher-loc>New York</publisher-loc>: <publisher-name>Guildford Press</publisher-name>; <year>2012</year>.</mixed-citation></ref><ref id="pone.0169164.ref040"><label>40</label><mixed-citation publication-type="journal"><name><surname>Hu</surname><given-names>LT</given-names></name>, <name><surname>Bentler</surname><given-names>PM</given-names></name>. <article-title>Cutoff criteria for fit indexes in covariance structure analysis: conventional criteria versus new alternatives</article-title>. <source>Structural Equation Modeling</source><year>1999</year>;<volume>6</volume>(<issue>1</issue>):<fpage>1</fpage>–<lpage>55</lpage>.</mixed-citation></ref><ref id="pone.0169164.ref041"><label>41</label><mixed-citation publication-type="journal"><name><surname>Genser</surname><given-names>B</given-names></name>, <name><surname>Cooper</surname><given-names>PJ</given-names></name>, <name><surname>Yazdanbakhsh</surname><given-names>M</given-names></name>, <name><surname>Barreto</surname><given-names>ML</given-names></name>, <name><surname>Rodrigues</surname><given-names>LC</given-names></name>. <article-title>A guide to modern statistical analysis of immunological data</article-title>. <source>BMC Immunol</source><year>2007</year><month>10</month><day>26</day>;<volume>8</volume>:<fpage>27</fpage><comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1186/1471-2172-8-27">10.1186/1471-2172-8-27</ext-link></comment><pub-id pub-id-type="pmid">17963513</pub-id></mixed-citation></ref><ref id="pone.0169164.ref042"><label>42</label><mixed-citation publication-type="journal"><name><surname>Hanf</surname><given-names>M</given-names></name>, <name><surname>Guégan</surname><given-names>JF</given-names></name>, <name><surname>Ahmed</surname><given-names>I</given-names></name>, <name><surname>Nacher</surname><given-names>M</given-names></name>. <article-title>Disentangling the complexity of infectious diseases: Time is ripe to improve the first-line statistical toolbox for epidemiologists</article-title>. <source>Infect Genet Evol</source><year>2014</year><month>1</month>;<volume>21</volume>:<fpage>497</fpage>–<lpage>505</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1016/j.meegid.2013.09.006">10.1016/j.meegid.2013.09.006</ext-link></comment><pub-id pub-id-type="pmid">24035791</pub-id></mixed-citation></ref><ref id="pone.0169164.ref043"><label>43</label><mixed-citation publication-type="journal"><name><surname>Brown</surname><given-names>JR</given-names></name>, <name><surname>Stafford</surname><given-names>P</given-names></name>, <name><surname>Johnston</surname><given-names>SA</given-names></name>, <name><surname>Dinu</surname><given-names>V</given-names></name>. <article-title>Statistical methods for analyzing immunosignatures</article-title>. <source>BMC Bioinformatics</source><year>2011</year><month>8</month><day>19</day>;<volume>12</volume>:<fpage>349</fpage><comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1186/1471-2105-12-349">10.1186/1471-2105-12-349</ext-link></comment><pub-id pub-id-type="pmid">21854615</pub-id></mixed-citation></ref><ref id="pone.0169164.ref044"><label>44</label><mixed-citation publication-type="journal"><name><surname>Tétard-Jones</surname><given-names>C</given-names></name>, <name><surname>Gatehouse</surname><given-names>AM</given-names></name>, <name><surname>Cooper</surname><given-names>J</given-names></name>, <name><surname>Leifert</surname><given-names>C</given-names></name>, <name><surname>Rushton</surname><given-names>S</given-names></name>. <article-title>Modelling pathways to Rubisco degradation: a structural equation network modelling approach</article-title>. <source>PLoS One</source><year>2014</year><month>2</month><day>3</day>;<volume>9</volume>(<issue>2</issue>):<fpage>e87597</fpage><comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1371/journal.pone.0087597">10.1371/journal.pone.0087597</ext-link></comment><pub-id pub-id-type="pmid">24498339</pub-id></mixed-citation></ref><ref id="pone.0169164.ref045"><label>45</label><mixed-citation publication-type="journal"><name><surname>Freeman</surname><given-names>ML</given-names></name>, <name><surname>Lederman</surname><given-names>MM</given-names></name>, <name><surname>Gianella</surname><given-names>S</given-names></name>. <article-title>Partners in Crime: The Role of CMV in Immune Dysregulation and Clinical Outcome During HIV Infection</article-title>. <source>Curr HIV/AIDS Rep</source><year>2016</year><month>2</month>;<volume>13</volume>(<issue>1</issue>):<fpage>10</fpage>–<lpage>9</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1007/s11904-016-0297-9">10.1007/s11904-016-0297-9</ext-link></comment><pub-id pub-id-type="pmid">26810437</pub-id></mixed-citation></ref><ref id="pone.0169164.ref046"><label>46</label><mixed-citation publication-type="journal"><name><surname>Gianella</surname><given-names>S</given-names></name>, <name><surname>Letendre</surname><given-names>S</given-names></name>. <article-title>Cytomegalovirus and HIV: A Dangerous Pas de Deux</article-title>. <source>J Infect Dis</source><year>2016</year><month>10</month><day>1</day>;<volume>214</volume><issue>Suppl 2</issue>:<fpage>S67</fpage>–<lpage>74</lpage>.<pub-id pub-id-type="pmid">27625433</pub-id></mixed-citation></ref><ref id="pone.0169164.ref047"><label>47</label><mixed-citation publication-type="journal"><name><surname>Lichtner</surname><given-names>M</given-names></name>, <name><surname>Cicconi</surname><given-names>P</given-names></name>, <name><surname>Vita</surname><given-names>S</given-names></name>, <name><surname>Cozzi-Lepri</surname><given-names>A</given-names></name>, <name><surname>Galli</surname><given-names>M</given-names></name>, <name><surname>Lo Caputo</surname><given-names>S</given-names></name>, <etal>et al</etal><article-title>Cytomegalovirus coinfection is associated with an increased risk of severe non-AIDS-defining events in a large cohort of HIV-infected patients</article-title>. <source>J Infect Dis</source><year>2015</year>; <volume>211</volume>:<fpage>178</fpage>–<lpage>186</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1093/infdis/jiu417">10.1093/infdis/jiu417</ext-link></comment><pub-id pub-id-type="pmid">25081936</pub-id></mixed-citation></ref><ref id="pone.0169164.ref048"><label>48</label><mixed-citation publication-type="journal"><name><surname>Effros</surname><given-names>RB</given-names></name>. <article-title>The silent war of CMV in aging and HIV infection</article-title>. <source>Mech Ageing Dev</source><year>2016</year><month>9</month>;<volume>158</volume>:<fpage>46</fpage>–<lpage>52</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1016/j.mad.2015.09.003">10.1016/j.mad.2015.09.003</ext-link></comment><pub-id pub-id-type="pmid">26404009</pub-id></mixed-citation></ref><ref id="pone.0169164.ref049"><label>49</label><mixed-citation publication-type="journal"><name><surname>Freeman</surname><given-names>ML</given-names></name>, <name><surname>Mudd</surname><given-names>JC</given-names></name>, <name><surname>Shive</surname><given-names>CL</given-names></name>, <name><surname>Younes</surname><given-names>SA</given-names></name>, <name><surname>Panigrahi</surname><given-names>S</given-names></name>, <name><surname>Sieg</surname><given-names>SF</given-names></name><etal>et al</etal><article-title>CD8 T-cell expansion and inflammation linked to CMV coinfection in ART-treated HIV infection</article-title>. <source>Clin Infect Dis</source><year>2015</year>.</mixed-citation></ref><ref id="pone.0169164.ref050"><label>50</label><mixed-citation publication-type="journal"><name><surname>Stone</surname><given-names>SF</given-names></name>, <name><surname>Price</surname><given-names>P</given-names></name>, <name><surname>Khan</surname><given-names>N</given-names></name>, <name><surname>Moss</surname><given-names>PA</given-names></name>, <name><surname>French</surname><given-names>MA</given-names></name>. <article-title>HIV patients on antiretroviral therapy have high frequencies of CD8 T cells specific for Immediate Early protein-1 of cytomegalovirus</article-title>. <source>AIDS</source><year>2005</year><month>3</month><day>24</day>;<volume>19</volume>(<issue>6</issue>):<fpage>555</fpage>–<lpage>62</lpage>. <pub-id pub-id-type="pmid">15802973</pub-id></mixed-citation></ref><ref id="pone.0169164.ref051"><label>51</label><mixed-citation publication-type="journal"><name><surname>Thom</surname><given-names>JT</given-names></name>, <name><surname>Oxenius</surname><given-names>A</given-names></name>. <article-title>Tissue-resident memory T cells in cytomegalovirus infection</article-title>. <source>Curr Opin Virol</source><year>2016</year><month>2</month>;<volume>16</volume>:<fpage>63</fpage>–<lpage>9</lpage><comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1016/j.coviro.2016.01.014">10.1016/j.coviro.2016.01.014</ext-link></comment><pub-id pub-id-type="pmid">26855038</pub-id></mixed-citation></ref><ref id="pone.0169164.ref052"><label>52</label><mixed-citation publication-type="journal"><name><surname>Abad-Fernandez</surname><given-names>M</given-names></name>, <name><surname>Vallejo</surname><given-names>A</given-names></name>, <name><surname>Hernandez-Novoa</surname><given-names>B</given-names></name>, <name><surname>Diaz</surname><given-names>L</given-names></name>, <name><surname>Gutierrez</surname><given-names>C</given-names></name>, <name><surname>Madrid</surname><given-names>N</given-names></name>, <etal>et al</etal><article-title>Correlation between different methods to measure microbial translocation and its association with immune activation in long-term suppressed HIV-1-infected individuals</article-title>. <source>J Acquir Immune Defic Syndr</source><year>2013</year><month>10</month><day>1</day>;<volume>64</volume>(<issue>2</issue>):<fpage>149</fpage>–<lpage>53</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1097/QAI.0b013e31829a2f12">10.1097/QAI.0b013e31829a2f12</ext-link></comment><pub-id pub-id-type="pmid">24047967</pub-id></mixed-citation></ref><ref id="pone.0169164.ref053"><label>53</label><mixed-citation publication-type="journal"><name><surname>Akira</surname><given-names>S</given-names></name>, <name><surname>Takeda</surname><given-names>K</given-names></name>. <article-title>Toll-like receptor signalling</article-title>. <source>Nat Rev Immunol</source><year>2004</year><month>7</month>;<volume>4</volume>(<issue>7</issue>):<fpage>499</fpage>–<lpage>511</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1038/nri1391">10.1038/nri1391</ext-link></comment><pub-id pub-id-type="pmid">15229469</pub-id></mixed-citation></ref><ref id="pone.0169164.ref054"><label>54</label><mixed-citation publication-type="journal"><name><surname>Kader</surname><given-names>M</given-names></name>, <name><surname>Smith</surname><given-names>AP</given-names></name>, <name><surname>Guiducci</surname><given-names>C</given-names></name>, <name><surname>Wonderlich</surname><given-names>ER</given-names></name>, <name><surname>Normolle</surname><given-names>D</given-names></name>, <name><surname>Watkins</surname><given-names>SC</given-names></name>, <etal>et al</etal><article-title>Blocking TLR7- and TLR9-mediated IFN-alpha production by plasmacytoid dendritic cells does not diminish immune activation in early SIV infection</article-title>. <source>PLoS Pathog</source><year>2013</year>;<volume>9</volume>(<issue>7</issue>):<fpage>e1003530</fpage><comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1371/journal.ppat.1003530">10.1371/journal.ppat.1003530</ext-link></comment><pub-id pub-id-type="pmid">23935491</pub-id></mixed-citation></ref><ref id="pone.0169164.ref055"><label>55</label><mixed-citation publication-type="journal"><name><surname>Meier</surname><given-names>A</given-names></name>, <name><surname>Alter</surname><given-names>G</given-names></name>, <name><surname>Frahm</surname><given-names>N</given-names></name>, <name><surname>Sidhu</surname><given-names>H</given-names></name>, <name><surname>Li</surname><given-names>B</given-names></name>, <name><surname>Bagchi</surname><given-names>A</given-names></name>, <etal>et al</etal><article-title>MyD88-dependent immune activation mediated by human immunodeficiency virus type 1-encoded Toll-like receptor ligands</article-title>. <source>J Virol</source><year>2007</year><month>8</month>;<volume>81</volume>(<issue>15</issue>):<fpage>8180</fpage>–<lpage>91</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1128/JVI.00421-07">10.1128/JVI.00421-07</ext-link></comment><pub-id pub-id-type="pmid">17507480</pub-id></mixed-citation></ref><ref id="pone.0169164.ref056"><label>56</label><mixed-citation publication-type="journal"><name><surname>Dunson</surname><given-names>DB</given-names></name>. <article-title>Bayesian methods for latent trait modelling of longitudinal data</article-title>. <source>Stat Methods Med Res</source><year>2007</year><month>10</month>;<volume>16</volume>(<issue>5</issue>):<fpage>399</fpage>–<lpage>415</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1177/0962280206075309">10.1177/0962280206075309</ext-link></comment><pub-id pub-id-type="pmid">17656454</pub-id></mixed-citation></ref><ref id="pone.0169164.ref057"><label>57</label><mixed-citation publication-type="journal"><name><surname>Schneider</surname><given-names>WM</given-names></name>, <name><surname>Chevillotte</surname><given-names>MD</given-names></name>, <name><surname>Rice</surname><given-names>CM</given-names></name>. <article-title>Interferon-stimulated genes: a complex web of host defenses</article-title>. <source>Annu Rev Immunol</source><year>2014</year>;<volume>32</volume>:<fpage>513</fpage>–<lpage>45</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1146/annurev-immunol-032713-120231">10.1146/annurev-immunol-032713-120231</ext-link></comment><pub-id pub-id-type="pmid">24555472</pub-id></mixed-citation></ref><ref id="pone.0169164.ref058"><label>58</label><mixed-citation publication-type="journal"><name><surname>Schoggins</surname><given-names>JW</given-names></name>, <name><surname>Rice</surname><given-names>CM</given-names></name>. <article-title>Interferon-stimulated genes and their antiviral effector functions</article-title>. <source>Curr Opin Virol</source><year>2011</year><month>12</month>;<volume>1</volume>(<issue>6</issue>):<fpage>519</fpage>–<lpage>25</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1016/j.coviro.2011.10.008">10.1016/j.coviro.2011.10.008</ext-link></comment><pub-id pub-id-type="pmid">22328912</pub-id></mixed-citation></ref><ref id="pone.0169164.ref059"><label>59</label><mixed-citation publication-type="journal"><name><surname>Younas</surname><given-names>M</given-names></name>, <name><surname>Psomas</surname><given-names>C</given-names></name>, <name><surname>Reynes</surname><given-names>J</given-names></name>, <name><surname>Corbeau</surname><given-names>P</given-names></name>. <article-title>Immune activation in the course of HIV-1 infection: Causes, phenotypes and persistence under therapy</article-title>. <source>HIV Med</source><year>2016</year><month>2</month>;<volume>17</volume>(<issue>2</issue>):<fpage>89</fpage>–<lpage>105</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1111/hiv.12310">10.1111/hiv.12310</ext-link></comment><pub-id pub-id-type="pmid">26452565</pub-id></mixed-citation></ref><ref id="pone.0169164.ref060"><label>60</label><mixed-citation publication-type="journal"><name><surname>Huang</surname><given-names>CY</given-names></name>, <name><surname>Lu</surname><given-names>CW</given-names></name>, <name><surname>Liu</surname><given-names>YL</given-names></name>, <name><surname>Chiang</surname><given-names>CH</given-names></name>, <name><surname>Lee</surname><given-names>LT</given-names></name>, <name><surname>Huang</surname><given-names>KC</given-names></name>. <article-title>Relationship between chronic hepatitis B and metabolic syndrome: A structural equation modeling approach</article-title>. <source>Obesity</source><year>2016</year><month>2</month>;<volume>24</volume>(<issue>2</issue>):<fpage>483</fpage>–<lpage>9</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1002/oby.21333">10.1002/oby.21333</ext-link></comment><pub-id pub-id-type="pmid">26719030</pub-id></mixed-citation></ref><ref id="pone.0169164.ref061"><label>61</label><mixed-citation publication-type="journal"><name><surname>Baltar</surname><given-names>VT</given-names></name>, <name><surname>Xun</surname><given-names>WW</given-names></name>, <name><surname>Johansson</surname><given-names>M</given-names></name>, <name><surname>Ferrari</surname><given-names>P</given-names></name>, <name><surname>Chuang</surname><given-names>SC</given-names></name>, <name><surname>Relton</surname><given-names>C</given-names></name>, <etal>et al</etal><article-title>A structural equation modelling approach to explore the role of B vitamins and immune markers in lung cancer risk</article-title>. <source>Eur J Epidemiol</source><year>2013</year><month>8</month>;<volume>28</volume>(<issue>8</issue>):<fpage>677</fpage>–<lpage>88</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1007/s10654-013-9793-z">10.1007/s10654-013-9793-z</ext-link></comment><pub-id pub-id-type="pmid">23532743</pub-id></mixed-citation></ref><ref id="pone.0169164.ref062"><label>62</label><mixed-citation publication-type="journal"><name><surname>Shimizu</surname><given-names>H</given-names></name>, <name><surname>Arimura</surname><given-names>Y</given-names></name>, <name><surname>Onodera</surname><given-names>K</given-names></name>, <name><surname>Takahashi</surname><given-names>H</given-names></name>, <name><surname>Okahara</surname><given-names>S</given-names></name>, <name><surname>Kodaira</surname><given-names>J</given-names></name>, <etal>et al</etal><article-title>Malignant Potential of Gastrointestinal Cancers Assessed by Structural Equation Modeling</article-title>. <source>PLoS One</source><year>2016</year><month>2</month><day>18</day>;<volume>11</volume>(<issue>2</issue>):<fpage>e0149327</fpage><comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1371/journal.pone.0149327">10.1371/journal.pone.0149327</ext-link></comment><pub-id pub-id-type="pmid">26889682</pub-id></mixed-citation></ref><ref id="pone.0169164.ref063"><label>63</label><mixed-citation publication-type="journal"><name><surname>Mogensen</surname><given-names>UB</given-names></name>, <name><surname>Grandjean</surname><given-names>P</given-names></name>, <name><surname>Heilmann</surname><given-names>C</given-names></name>, <name><surname>Nielsen</surname><given-names>F</given-names></name>, <name><surname>Weihe</surname><given-names>P</given-names></name>, <name><surname>Budtz-Jørgensen</surname><given-names>E</given-names></name>. <article-title>Structural equation modeling of immunotoxicity associated with exposure to perfluorinated alkylates</article-title>. <source>Environ Health</source><year>2015</year><month>6</month><day>5</day>;<volume>14</volume>:<fpage>47</fpage><comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1186/s12940-015-0032-9">10.1186/s12940-015-0032-9</ext-link></comment><pub-id pub-id-type="pmid">26041029</pub-id></mixed-citation></ref><ref id="pone.0169164.ref064"><label>64</label><mixed-citation publication-type="journal"><name><surname>Genser</surname><given-names>B</given-names></name>, <name><surname>Fischer</surname><given-names>JE</given-names></name>, <name><surname>Figueiredo</surname><given-names>CA</given-names></name>, <name><surname>Alcântara-Neves</surname><given-names>N</given-names></name>, <name><surname>Barreto</surname><given-names>ML</given-names></name>, <name><surname>Cooper</surname><given-names>PJ</given-names></name>, <etal>et al</etal><article-title>Applied immuno-epidemiological research: an approach for integrating existing knowledge into the statistical analysis of multiple immune markers</article-title>. <source>BMC Immunol</source><year>2016</year><month>5</month>.</mixed-citation></ref><ref id="pone.0169164.ref065"><label>65</label><mixed-citation publication-type="journal"><name><surname>Carver</surname><given-names>S</given-names></name>, <name><surname>Beatty</surname><given-names>JA</given-names></name>, <name><surname>Troyer</surname><given-names>RM</given-names></name>, <name><surname>Harris</surname><given-names>RL</given-names></name>, <name><surname>Stutzman-Rodriguez</surname><given-names>K</given-names></name>, <name><surname>Barrs</surname><given-names>VR</given-names></name>, <etal>et al</etal><article-title>Closing the gap on causal processes of infection risk from cross-sectional data: structural equation models to understand infection and co-infection</article-title>. <source>Parasit Vectors</source><year>2015</year><month>12</month><day>23</day>;<volume>8</volume>:<fpage>658</fpage><comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1186/s13071-015-1274-7">10.1186/s13071-015-1274-7</ext-link></comment><pub-id pub-id-type="pmid">26701692</pub-id></mixed-citation></ref><ref id="pone.0169164.ref066"><label>66</label><mixed-citation publication-type="journal"><name><surname>Paiardini</surname><given-names>M</given-names></name>, <name><surname>Müller-Trutwin</surname><given-names>M</given-names></name>. <article-title>HIV-associated chronic immune activation</article-title>. <source>Immunol Rev</source><year>2013</year><month>7</month>;<volume>254</volume>(<issue>1</issue>):<fpage>78</fpage>–<lpage>101</lpage>. <comment>doi: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1111/imr.12079">10.1111/imr.12079</ext-link></comment><pub-id pub-id-type="pmid">23772616</pub-id></mixed-citation></ref></ref-list></back></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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