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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Revised Nomenclature for Transposable Genetic Elements</title><author><name sortKey="Roberts, Adam P" sort="Roberts, Adam P" uniqKey="Roberts A" first="Adam P." last="Roberts">Adam P. Roberts</name><affiliation><nlm:aff id="A1">Division of Microbial Diseases, UCL Eastman Dental Institute, University College London, 256 Gray's Inn Road, London, WC1X 8LD, UK</nlm:aff></affiliation></author><author><name sortKey="Chandler, Michael" sort="Chandler, Michael" uniqKey="Chandler M" first="Michael" last="Chandler">Michael Chandler</name><affiliation><nlm:aff id="A2">Laboratoire de Microbiologie et Genetique Moleculaires, CNRS UMR5100, Université Paul Sabatier, 118 Route de Narbonne, 31062 Toulouse Cedex, France</nlm:aff></affiliation></author><author><name sortKey="Courvalin, Patrice" sort="Courvalin, Patrice" uniqKey="Courvalin P" first="Patrice" last="Courvalin">Patrice Courvalin</name><affiliation><nlm:aff id="A3">Unité des Agents Antibactériens, Institut Pasteur, Paris, France</nlm:aff></affiliation></author><author><name sortKey="Guedon, Gerard" sort="Guedon, Gerard" uniqKey="Guedon G" first="Gérard" last="Guédon">Gérard Guédon</name><affiliation><nlm:aff id="A4">Laboratoire de Génétique et Microbiologie, UMR1128, INRA, Nancy-Université, Vandoeuvre-lès-Nancy, France</nlm:aff></affiliation></author><author><name sortKey="Mullany, Peter" sort="Mullany, Peter" uniqKey="Mullany P" first="Peter" last="Mullany">Peter Mullany</name><affiliation><nlm:aff id="A1">Division of Microbial Diseases, UCL Eastman Dental Institute, University College London, 256 Gray's Inn Road, London, WC1X 8LD, UK</nlm:aff></affiliation></author><author><name sortKey="Pembroke, Tony" sort="Pembroke, Tony" uniqKey="Pembroke T" first="Tony" last="Pembroke">Tony Pembroke</name><affiliation><nlm:aff id="A5">Molecular Biochemistry Laboratory, Department of Chemical and Environmental Sciences, University of Limerick, Limerick, Ireland</nlm:aff></affiliation></author><author><name sortKey="Rood, Julian I" sort="Rood, Julian I" uniqKey="Rood J" first="Julian I." last="Rood">Julian I. Rood</name><affiliation><nlm:aff id="A6">Australian Bacterial Pathogenesis Program, Department of Microbiology, Monash University, Victoria 3800, Australia</nlm:aff></affiliation></author><author><name sortKey="Smith, C Jeffery" sort="Smith, C Jeffery" uniqKey="Smith C" first="C. Jeffery" last="Smith">C. Jeffery Smith</name><affiliation><nlm:aff id="A7">Department of Microbiology and Immunology, 600 Moye Blvd., Brody School of Medicine at East Carolina University, Greenville, NC 27834, USA</nlm:aff></affiliation></author><author><name sortKey="Summers, Anne O" sort="Summers, Anne O" uniqKey="Summers A" first="Anne O." last="Summers">Anne O. Summers</name><affiliation><nlm:aff id="A8">Department of Microbiology, 263 Biological Sciences Building, The University of Georgia, Athens, Georgia, 30602-2605, USA</nlm:aff></affiliation></author><author><name sortKey="Tsuda, Masataka" sort="Tsuda, Masataka" uniqKey="Tsuda M" first="Masataka" last="Tsuda">Masataka Tsuda</name><affiliation><nlm:aff id="A9">Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Katahira, Sendai 980-8577, Japan</nlm:aff></affiliation></author><author><name sortKey="Berg, Douglas E" sort="Berg, Douglas E" uniqKey="Berg D" first="Douglas E." last="Berg">Douglas E. Berg</name><affiliation><nlm:aff id="A10">Departments of Molecular Microbiology and of Genetics, Washington University School of Medicine, St. Louis, Missouri 63110, USA</nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">18778731</idno><idno type="pmc">3836210</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3836210</idno><idno type="RBID">PMC:3836210</idno><idno type="doi">10.1016/j.plasmid.2008.08.001</idno><date when="2008">2008</date><idno type="wicri:Area/Pmc/Corpus">001F79</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">001F79</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Revised Nomenclature for Transposable Genetic Elements</title><author><name sortKey="Roberts, Adam P" sort="Roberts, Adam P" uniqKey="Roberts A" first="Adam P." last="Roberts">Adam P. Roberts</name><affiliation><nlm:aff id="A1">Division of Microbial Diseases, UCL Eastman Dental Institute, University College London, 256 Gray's Inn Road, London, WC1X 8LD, UK</nlm:aff></affiliation></author><author><name sortKey="Chandler, Michael" sort="Chandler, Michael" uniqKey="Chandler M" first="Michael" last="Chandler">Michael Chandler</name><affiliation><nlm:aff id="A2">Laboratoire de Microbiologie et Genetique Moleculaires, CNRS UMR5100, Université Paul Sabatier, 118 Route de Narbonne, 31062 Toulouse Cedex, France</nlm:aff></affiliation></author><author><name sortKey="Courvalin, Patrice" sort="Courvalin, Patrice" uniqKey="Courvalin P" first="Patrice" last="Courvalin">Patrice Courvalin</name><affiliation><nlm:aff id="A3">Unité des Agents Antibactériens, Institut Pasteur, Paris, France</nlm:aff></affiliation></author><author><name sortKey="Guedon, Gerard" sort="Guedon, Gerard" uniqKey="Guedon G" first="Gérard" last="Guédon">Gérard Guédon</name><affiliation><nlm:aff id="A4">Laboratoire de Génétique et Microbiologie, UMR1128, INRA, Nancy-Université, Vandoeuvre-lès-Nancy, France</nlm:aff></affiliation></author><author><name sortKey="Mullany, Peter" sort="Mullany, Peter" uniqKey="Mullany P" first="Peter" last="Mullany">Peter Mullany</name><affiliation><nlm:aff id="A1">Division of Microbial Diseases, UCL Eastman Dental Institute, University College London, 256 Gray's Inn Road, London, WC1X 8LD, UK</nlm:aff></affiliation></author><author><name sortKey="Pembroke, Tony" sort="Pembroke, Tony" uniqKey="Pembroke T" first="Tony" last="Pembroke">Tony Pembroke</name><affiliation><nlm:aff id="A5">Molecular Biochemistry Laboratory, Department of Chemical and Environmental Sciences, University of Limerick, Limerick, Ireland</nlm:aff></affiliation></author><author><name sortKey="Rood, Julian I" sort="Rood, Julian I" uniqKey="Rood J" first="Julian I." last="Rood">Julian I. Rood</name><affiliation><nlm:aff id="A6">Australian Bacterial Pathogenesis Program, Department of Microbiology, Monash University, Victoria 3800, Australia</nlm:aff></affiliation></author><author><name sortKey="Smith, C Jeffery" sort="Smith, C Jeffery" uniqKey="Smith C" first="C. Jeffery" last="Smith">C. Jeffery Smith</name><affiliation><nlm:aff id="A7">Department of Microbiology and Immunology, 600 Moye Blvd., Brody School of Medicine at East Carolina University, Greenville, NC 27834, USA</nlm:aff></affiliation></author><author><name sortKey="Summers, Anne O" sort="Summers, Anne O" uniqKey="Summers A" first="Anne O." last="Summers">Anne O. Summers</name><affiliation><nlm:aff id="A8">Department of Microbiology, 263 Biological Sciences Building, The University of Georgia, Athens, Georgia, 30602-2605, USA</nlm:aff></affiliation></author><author><name sortKey="Tsuda, Masataka" sort="Tsuda, Masataka" uniqKey="Tsuda M" first="Masataka" last="Tsuda">Masataka Tsuda</name><affiliation><nlm:aff id="A9">Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Katahira, Sendai 980-8577, Japan</nlm:aff></affiliation></author><author><name sortKey="Berg, Douglas E" sort="Berg, Douglas E" uniqKey="Berg D" first="Douglas E." last="Berg">Douglas E. Berg</name><affiliation><nlm:aff id="A10">Departments of Molecular Microbiology and of Genetics, Washington University School of Medicine, St. Louis, Missouri 63110, USA</nlm:aff></affiliation></author></analytic><series><title level="j">Plasmid</title><idno type="ISSN">0147-619X</idno><idno type="eISSN">1095-9890</idno><imprint><date when="2008">2008</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p id="P1">Transposable DNA elements occur naturally in the genomes of nearly all species of prokaryotes. A proposal for a uniform transposable element nomenclature was published prominently in the 1970s but is not, at present, available online even in abstract form, and many of the newly discovered elements have been named without reference to it. We propose here an updated version of the original nomenclature system for all of the various types of prokaryotic, autonomous, transposable elements excluding insertion sequences, for which a nomenclature system already exists. The use of this inclusive and sequential Tn numbering system for transposable elements described here recognizes the ease of interspecies spread of individual elements, and allows for the naming of mosaic elements containing segments from two or more previously described types of transposons or plasmids. It will guard against a future necessity to rename elements following changes in bacterial nomenclature which occurs constantly with our increased understanding of bacterial phylogenies and taxonomic groupings. It also takes into account the increasing importance of metagenomic sequencing projects and the continued identification of new mobile elements from unknown hosts.</p></div></front></TEI><pmc article-type="research-article"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<pmc-dir>properties manuscript</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-journal-id">7802221</journal-id><journal-id journal-id-type="pubmed-jr-id">6476</journal-id><journal-id journal-id-type="nlm-ta">Plasmid</journal-id><journal-id journal-id-type="iso-abbrev">Plasmid</journal-id><journal-title-group><journal-title>Plasmid</journal-title></journal-title-group><issn pub-type="ppub">0147-619X</issn><issn pub-type="epub">1095-9890</issn></journal-meta><article-meta><article-id pub-id-type="pmid">18778731</article-id><article-id pub-id-type="pmc">3836210</article-id><article-id pub-id-type="doi">10.1016/j.plasmid.2008.08.001</article-id><article-id pub-id-type="manuscript">NIHMS77112</article-id><article-categories><subj-group subj-group-type="heading"><subject>Article</subject></subj-group></article-categories><title-group><article-title>Revised Nomenclature for Transposable Genetic Elements</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Roberts</surname><given-names>Adam P.</given-names></name><xref ref-type="aff" rid="A1">1</xref><xref ref-type="corresp" rid="cor1">*</xref></contrib><contrib contrib-type="author"><name><surname>Chandler</surname><given-names>Michael</given-names></name><xref ref-type="aff" rid="A2">2</xref></contrib><contrib contrib-type="author"><name><surname>Courvalin</surname><given-names>Patrice</given-names></name><xref ref-type="aff" rid="A3">3</xref></contrib><contrib contrib-type="author"><name><surname>Guédon</surname><given-names>Gérard</given-names></name><xref ref-type="aff" rid="A4">4</xref></contrib><contrib contrib-type="author"><name><surname>Mullany</surname><given-names>Peter</given-names></name><xref ref-type="aff" rid="A1">1</xref></contrib><contrib contrib-type="author"><name><surname>Pembroke</surname><given-names>Tony</given-names></name><xref ref-type="aff" rid="A5">5</xref></contrib><contrib contrib-type="author"><name><surname>Rood</surname><given-names>Julian I.</given-names></name><xref ref-type="aff" rid="A6">6</xref></contrib><contrib contrib-type="author"><name><surname>Smith</surname><given-names>C. Jeffery</given-names></name><xref ref-type="aff" rid="A7">7</xref></contrib><contrib contrib-type="author"><name><surname>Summers</surname><given-names>Anne O.</given-names></name><xref ref-type="aff" rid="A8">8</xref></contrib><contrib contrib-type="author"><name><surname>Tsuda</surname><given-names>Masataka</given-names></name><xref ref-type="aff" rid="A9">9</xref></contrib><contrib contrib-type="author"><name><surname>Berg</surname><given-names>Douglas E.</given-names></name><xref ref-type="aff" rid="A10">10</xref></contrib></contrib-group><aff id="A1"><label>1</label>Division of Microbial Diseases, UCL Eastman Dental Institute, University College London, 256 Gray's Inn Road, London, WC1X 8LD, UK</aff><aff id="A2"><label>2</label>Laboratoire de Microbiologie et Genetique Moleculaires, CNRS UMR5100, Université Paul Sabatier, 118 Route de Narbonne, 31062 Toulouse Cedex, France</aff><aff id="A3"><label>3</label>Unité des Agents Antibactériens, Institut Pasteur, Paris, France</aff><aff id="A4"><label>4</label>Laboratoire de Génétique et Microbiologie, UMR1128, INRA, Nancy-Université, Vandoeuvre-lès-Nancy, France</aff><aff id="A5"><label>5</label>Molecular Biochemistry Laboratory, Department of Chemical and Environmental Sciences, University of Limerick, Limerick, Ireland</aff><aff id="A6"><label>6</label>Australian Bacterial Pathogenesis Program, Department of Microbiology, Monash University, Victoria 3800, Australia</aff><aff id="A7"><label>7</label>Department of Microbiology and Immunology, 600 Moye Blvd., Brody School of Medicine at East Carolina University, Greenville, NC 27834, USA</aff><aff id="A8"><label>8</label>Department of Microbiology, 263 Biological Sciences Building, The University of Georgia, Athens, Georgia, 30602-2605, USA</aff><aff id="A9"><label>9</label>Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Katahira, Sendai 980-8577, Japan</aff><aff id="A10"><label>10</label>Departments of Molecular Microbiology and of Genetics, Washington University School of Medicine, St. Louis, Missouri 63110, USA</aff><author-notes><corresp id="cor1"><label>*</label>Corresponding Author; Division of Microbial Diseases, UCL Eastman Dental Institute, University College London, 256 Gray's Inn Road, London, WC1X 8LD, UK. Tel; +44 (0)2079151050. Fax; +44(0) 2079151127. <email>aroberts@eastman.ucl.ac.uk</email></corresp></author-notes><pub-date pub-type="nihms-submitted"><day>2</day><month>11</month><year>2013</year></pub-date><pub-date pub-type="epub"><day>26</day><month>9</month><year>2008</year></pub-date><pub-date pub-type="ppub"><month>11</month><year>2008</year></pub-date><pub-date pub-type="pmc-release"><day>21</day><month>11</month><year>2013</year></pub-date><volume>60</volume><issue>3</issue><elocation-id>10.1016/j.plasmid.2008.08.001</elocation-id><permissions><copyright-statement>© 2008 Elsevier Inc. All rights reserved.</copyright-statement><copyright-year>2008</copyright-year></permissions><abstract><p id="P1">Transposable DNA elements occur naturally in the genomes of nearly all species of prokaryotes. A proposal for a uniform transposable element nomenclature was published prominently in the 1970s but is not, at present, available online even in abstract form, and many of the newly discovered elements have been named without reference to it. We propose here an updated version of the original nomenclature system for all of the various types of prokaryotic, autonomous, transposable elements excluding insertion sequences, for which a nomenclature system already exists. The use of this inclusive and sequential Tn numbering system for transposable elements described here recognizes the ease of interspecies spread of individual elements, and allows for the naming of mosaic elements containing segments from two or more previously described types of transposons or plasmids. It will guard against a future necessity to rename elements following changes in bacterial nomenclature which occurs constantly with our increased understanding of bacterial phylogenies and taxonomic groupings. It also takes into account the increasing importance of metagenomic sequencing projects and the continued identification of new mobile elements from unknown hosts.</p></abstract><funding-group><award-group><funding-source country="United States">National Institute of Allergy and Infectious Diseases Extramural Activities : NIAID</funding-source><award-id>R01 AI040588 || AI</award-id></award-group></funding-group></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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