Links to Exploration step
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">MASCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data<xref ref-type="author-notes" rid="fn1"><sup>1</sup></xref><xref ref-type="author-notes" rid="fn2"><sup>[C]</sup></xref><xref ref-type="author-notes" rid="fn3"><sup>[OA]</sup></xref></title><author><name sortKey="Joshi, Hiren J" sort="Joshi, Hiren J" uniqKey="Joshi H" first="Hiren J." last="Joshi">Hiren J. Joshi</name></author><author><name sortKey="Hirsch Hoffmann, Matthias" sort="Hirsch Hoffmann, Matthias" uniqKey="Hirsch Hoffmann M" first="Matthias" last="Hirsch-Hoffmann">Matthias Hirsch-Hoffmann</name></author><author><name sortKey="Baerenfaller, Katja" sort="Baerenfaller, Katja" uniqKey="Baerenfaller K" first="Katja" last="Baerenfaller">Katja Baerenfaller</name></author><author><name sortKey="Gruissem, Wilhelm" sort="Gruissem, Wilhelm" uniqKey="Gruissem W" first="Wilhelm" last="Gruissem">Wilhelm Gruissem</name></author><author><name sortKey="Baginsky, Sacha" sort="Baginsky, Sacha" uniqKey="Baginsky S" first="Sacha" last="Baginsky">Sacha Baginsky</name></author><author><name sortKey="Schmidt, Robert" sort="Schmidt, Robert" uniqKey="Schmidt R" first="Robert" last="Schmidt">Robert Schmidt</name></author><author><name sortKey="Schulze, Waltraud X" sort="Schulze, Waltraud X" uniqKey="Schulze W" first="Waltraud X." last="Schulze">Waltraud X. Schulze</name></author><author><name sortKey="Sun, Qi" sort="Sun, Qi" uniqKey="Sun Q" first="Qi" last="Sun">Qi Sun</name></author><author><name sortKey="Van Wijk, Klaas J" sort="Van Wijk, Klaas J" uniqKey="Van Wijk K" first="Klaas J." last="Van Wijk">Klaas J. Van Wijk</name></author><author><name sortKey="Egelhofer, Volker" sort="Egelhofer, Volker" uniqKey="Egelhofer V" first="Volker" last="Egelhofer">Volker Egelhofer</name></author><author><name sortKey="Wienkoop, Stefanie" sort="Wienkoop, Stefanie" uniqKey="Wienkoop S" first="Stefanie" last="Wienkoop">Stefanie Wienkoop</name></author><author><name sortKey="Weckwerth, Wolfram" sort="Weckwerth, Wolfram" uniqKey="Weckwerth W" first="Wolfram" last="Weckwerth">Wolfram Weckwerth</name></author><author><name sortKey="Bruley, Christophe" sort="Bruley, Christophe" uniqKey="Bruley C" first="Christophe" last="Bruley">Christophe Bruley</name></author><author><name sortKey="Rolland, Norbert" sort="Rolland, Norbert" uniqKey="Rolland N" first="Norbert" last="Rolland">Norbert Rolland</name></author><author><name sortKey="Toyoda, Tetsuro" sort="Toyoda, Tetsuro" uniqKey="Toyoda T" first="Tetsuro" last="Toyoda">Tetsuro Toyoda</name></author><author><name sortKey="Nakagami, Hirofumi" sort="Nakagami, Hirofumi" uniqKey="Nakagami H" first="Hirofumi" last="Nakagami">Hirofumi Nakagami</name></author><author><name sortKey="Jones, Alexandra M" sort="Jones, Alexandra M" uniqKey="Jones A" first="Alexandra M." last="Jones">Alexandra M. Jones</name></author><author><name sortKey="Briggs, Steven P" sort="Briggs, Steven P" uniqKey="Briggs S" first="Steven P." last="Briggs">Steven P. Briggs</name></author><author><name sortKey="Castleden, Ian" sort="Castleden, Ian" uniqKey="Castleden I" first="Ian" last="Castleden">Ian Castleden</name></author><author><name sortKey="Tanz, Sandra K" sort="Tanz, Sandra K" uniqKey="Tanz S" first="Sandra K." last="Tanz">Sandra K. Tanz</name></author><author><name sortKey="Millar, A Harvey" sort="Millar, A Harvey" uniqKey="Millar A" first="A. Harvey" last="Millar">A. Harvey Millar</name></author><author><name sortKey="Heazlewood, Joshua L" sort="Heazlewood, Joshua L" uniqKey="Heazlewood J" first="Joshua L." last="Heazlewood">Joshua L. Heazlewood</name></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">21075962</idno><idno type="pmc">3075751</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3075751</idno><idno type="RBID">PMC:3075751</idno><idno type="doi">10.1104/pp.110.168195</idno><date when="2010">2010</date><idno type="wicri:Area/Pmc/Corpus">001A70</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">001A70</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">MASCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data<xref ref-type="author-notes" rid="fn1"><sup>1</sup></xref><xref ref-type="author-notes" rid="fn2"><sup>[C]</sup></xref><xref ref-type="author-notes" rid="fn3"><sup>[OA]</sup></xref></title><author><name sortKey="Joshi, Hiren J" sort="Joshi, Hiren J" uniqKey="Joshi H" first="Hiren J." last="Joshi">Hiren J. Joshi</name></author><author><name sortKey="Hirsch Hoffmann, Matthias" sort="Hirsch Hoffmann, Matthias" uniqKey="Hirsch Hoffmann M" first="Matthias" last="Hirsch-Hoffmann">Matthias Hirsch-Hoffmann</name></author><author><name sortKey="Baerenfaller, Katja" sort="Baerenfaller, Katja" uniqKey="Baerenfaller K" first="Katja" last="Baerenfaller">Katja Baerenfaller</name></author><author><name sortKey="Gruissem, Wilhelm" sort="Gruissem, Wilhelm" uniqKey="Gruissem W" first="Wilhelm" last="Gruissem">Wilhelm Gruissem</name></author><author><name sortKey="Baginsky, Sacha" sort="Baginsky, Sacha" uniqKey="Baginsky S" first="Sacha" last="Baginsky">Sacha Baginsky</name></author><author><name sortKey="Schmidt, Robert" sort="Schmidt, Robert" uniqKey="Schmidt R" first="Robert" last="Schmidt">Robert Schmidt</name></author><author><name sortKey="Schulze, Waltraud X" sort="Schulze, Waltraud X" uniqKey="Schulze W" first="Waltraud X." last="Schulze">Waltraud X. Schulze</name></author><author><name sortKey="Sun, Qi" sort="Sun, Qi" uniqKey="Sun Q" first="Qi" last="Sun">Qi Sun</name></author><author><name sortKey="Van Wijk, Klaas J" sort="Van Wijk, Klaas J" uniqKey="Van Wijk K" first="Klaas J." last="Van Wijk">Klaas J. Van Wijk</name></author><author><name sortKey="Egelhofer, Volker" sort="Egelhofer, Volker" uniqKey="Egelhofer V" first="Volker" last="Egelhofer">Volker Egelhofer</name></author><author><name sortKey="Wienkoop, Stefanie" sort="Wienkoop, Stefanie" uniqKey="Wienkoop S" first="Stefanie" last="Wienkoop">Stefanie Wienkoop</name></author><author><name sortKey="Weckwerth, Wolfram" sort="Weckwerth, Wolfram" uniqKey="Weckwerth W" first="Wolfram" last="Weckwerth">Wolfram Weckwerth</name></author><author><name sortKey="Bruley, Christophe" sort="Bruley, Christophe" uniqKey="Bruley C" first="Christophe" last="Bruley">Christophe Bruley</name></author><author><name sortKey="Rolland, Norbert" sort="Rolland, Norbert" uniqKey="Rolland N" first="Norbert" last="Rolland">Norbert Rolland</name></author><author><name sortKey="Toyoda, Tetsuro" sort="Toyoda, Tetsuro" uniqKey="Toyoda T" first="Tetsuro" last="Toyoda">Tetsuro Toyoda</name></author><author><name sortKey="Nakagami, Hirofumi" sort="Nakagami, Hirofumi" uniqKey="Nakagami H" first="Hirofumi" last="Nakagami">Hirofumi Nakagami</name></author><author><name sortKey="Jones, Alexandra M" sort="Jones, Alexandra M" uniqKey="Jones A" first="Alexandra M." last="Jones">Alexandra M. Jones</name></author><author><name sortKey="Briggs, Steven P" sort="Briggs, Steven P" uniqKey="Briggs S" first="Steven P." last="Briggs">Steven P. Briggs</name></author><author><name sortKey="Castleden, Ian" sort="Castleden, Ian" uniqKey="Castleden I" first="Ian" last="Castleden">Ian Castleden</name></author><author><name sortKey="Tanz, Sandra K" sort="Tanz, Sandra K" uniqKey="Tanz S" first="Sandra K." last="Tanz">Sandra K. Tanz</name></author><author><name sortKey="Millar, A Harvey" sort="Millar, A Harvey" uniqKey="Millar A" first="A. Harvey" last="Millar">A. Harvey Millar</name></author><author><name sortKey="Heazlewood, Joshua L" sort="Heazlewood, Joshua L" uniqKey="Heazlewood J" first="Joshua L." last="Heazlewood">Joshua L. Heazlewood</name></author></analytic><series><title level="j">Plant Physiology</title><idno type="ISSN">0032-0889</idno><idno type="eISSN">1532-2548</idno><imprint><date when="2010">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Proteomics has become a critical tool in the functional understanding of plant processes at the molecular level. Proteomics-based studies have also contributed to the ever-expanding array of data in modern biology, with many generating Web portals and online resources that contain incrementally expanding and updated information. Many of these resources reflect specialist research areas with significant and novel information that is not currently captured by centralized repositories. The Arabidopsis (<italic>Arabidopsis thaliana</italic>) community is well served by a number of online proteomics resources that hold an abundance of functional information. These sites can be difficult to locate among a multitude of online resources. Furthermore, they can be difficult to navigate in order to identify specific features of interest without significant technical knowledge. Recently, members of the Arabidopsis proteomics community involved in developing many of these resources decided to develop a summary aggregation portal that is capable of retrieving proteomics data from a series of online resources on the fly. The Web portal is known as the MASCP Gator and can be accessed at the following address: <ext-link ext-link-type="uri" xlink:href="http://gator.masc-proteomics.org/">http://gator.masc-proteomics.org/</ext-link>. Significantly, proteomics data displayed at this site retrieve information from the data repositories upon each request. This means that information is always up to date and displays the latest data sets. The site also provides hyperlinks back to the source information hosted at each of the curated databases to facilitate more in-depth analysis of the primary data.</p></div></front></TEI><pmc article-type="research-article"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Plant Physiol</journal-id><journal-id journal-id-type="hwp">plantphysiol</journal-id><journal-id journal-id-type="publisher-id">aspb</journal-id><journal-title-group><journal-title>Plant Physiology</journal-title></journal-title-group><issn pub-type="ppub">0032-0889</issn><issn pub-type="epub">1532-2548</issn><publisher><publisher-name>American Society of Plant Biologists</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">21075962</article-id><article-id pub-id-type="pmc">3075751</article-id><article-id pub-id-type="publisher-id">168195</article-id><article-id pub-id-type="doi">10.1104/pp.110.168195</article-id><article-categories><subj-group subj-group-type="heading"><subject>Bioinformatics</subject></subj-group></article-categories><title-group><article-title>MASCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data<xref ref-type="author-notes" rid="fn1"><sup>1</sup></xref><xref ref-type="author-notes" rid="fn2"><sup>[C]</sup></xref><xref ref-type="author-notes" rid="fn3"><sup>[OA]</sup></xref></article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Joshi</surname><given-names>Hiren J.</given-names></name></contrib><contrib contrib-type="author"><name><surname>Hirsch-Hoffmann</surname><given-names>Matthias</given-names></name></contrib><contrib contrib-type="author"><name><surname>Baerenfaller</surname><given-names>Katja</given-names></name></contrib><contrib contrib-type="author"><name><surname>Gruissem</surname><given-names>Wilhelm</given-names></name></contrib><contrib contrib-type="author"><name><surname>Baginsky</surname><given-names>Sacha</given-names></name></contrib><contrib contrib-type="author"><name><surname>Schmidt</surname><given-names>Robert</given-names></name></contrib><contrib contrib-type="author"><name><surname>Schulze</surname><given-names>Waltraud X.</given-names></name></contrib><contrib contrib-type="author"><name><surname>Sun</surname><given-names>Qi</given-names></name></contrib><contrib contrib-type="author"><name><surname>van Wijk</surname><given-names>Klaas J.</given-names></name></contrib><contrib contrib-type="author"><name><surname>Egelhofer</surname><given-names>Volker</given-names></name></contrib><contrib contrib-type="author"><name><surname>Wienkoop</surname><given-names>Stefanie</given-names></name></contrib><contrib contrib-type="author"><name><surname>Weckwerth</surname><given-names>Wolfram</given-names></name></contrib><contrib contrib-type="author"><name><surname>Bruley</surname><given-names>Christophe</given-names></name></contrib><contrib contrib-type="author"><name><surname>Rolland</surname><given-names>Norbert</given-names></name></contrib><contrib contrib-type="author"><name><surname>Toyoda</surname><given-names>Tetsuro</given-names></name></contrib><contrib contrib-type="author"><name><surname>Nakagami</surname><given-names>Hirofumi</given-names></name></contrib><contrib contrib-type="author"><name><surname>Jones</surname><given-names>Alexandra M.</given-names></name></contrib><contrib contrib-type="author"><name><surname>Briggs</surname><given-names>Steven P.</given-names></name></contrib><contrib contrib-type="author"><name><surname>Castleden</surname><given-names>Ian</given-names></name></contrib><contrib contrib-type="author"><name><surname>Tanz</surname><given-names>Sandra K.</given-names></name></contrib><contrib contrib-type="author"><name><surname>Millar</surname><given-names>A. Harvey</given-names></name></contrib><contrib contrib-type="author"><name><surname>Heazlewood</surname><given-names>Joshua L.</given-names></name><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib></contrib-group><aff>Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Berkeley, California 94720 (H.J.J., J.L.H.); Department of Biology, Eidgenössisch Technische Hochschule Zurich, CH–8092 Zurich, Switzerland (M.H.-H., K.B., W.G.); Institute of Biochemistry and Biotechnology, Martin-Luther-University Halle-Wittenberg, 06120 Halle (Saale), Germany (S.B.); Max-Planck Institute for Molecular Plant Physiology, 14476 Potsdam-Golm, Germany (R.S., W.X.S.); Department of Plant Biology, Cornell University, Ithaca, New York 14853 (Q.S., K.J.v.W.); Molecular Systems Biology, University of Vienna, 1090 Vienna, Austria (V.E., S.W., W.W.); Institut National de la Santé et de la Recherche Médicale, Laboratoire d’Etude de la Dynamique des Protéomes, U880, F–38000 Grenoble, France (C.B.); Commissariat à l’Énergie Atomique et aux Énergies Alternatives, Direction des Sciences du Vivant, Institut de Recherches en Technologies et Sciences pour le Vivant, F–38000 Grenoble, France (C.B., N.R.); Université Joseph Fourier, F–38000 Grenoble, France (C.B., N.R.); CNRS, Laboratoire de Physiologie Cellulaire Végétale, UMR5168, F–38000 Grenoble, France (N.R.); INRA, UMR1200, F–38000 Grenoble, France (N.R.); RIKEN Plant Science Center and RIKEN Bioinformatics and Systems Engineering Division, Tsurumi-ku, Yokohama 230–0045, Japan (T.T., H.N.); The Sainsbury Laboratory, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom (A.M.J.); Division of Biology, University of California San Diego, La Jolla, California 92093 (S.P.B.); Centre of Excellence for Computational Systems Biology (I.C.) and Australian Research Council Centre of Excellence in Plant Energy Biology and Centre for Comparative Analysis of Biomolecular Networks (I.C., S.K.T., A.H.M.), University of Western Australia, Crawley 6009, Western Australia, Australia</aff><author-notes><corresp id="cor1"><label>*</label>Corresponding author; e-mail <email>jlheazlewood@lbl.gov</email>.</corresp><fn id="fn1"><label>1</label><p>This work was part of the Department of Energy Joint BioEnergy Institute supported by the U.S. Department of Energy, Office of Science, Office of Biological and Environmental Research, through contract number DE–AC02–05CH11231 between Lawrence Berkeley National Laboratory and the U.S. Department of Energy. The Eidgenössisch Technische Hochschule AtProteome database was supported by the 6th European Framework Project AGRON-OMICS (contract no. LSHG–CT–2006–037704 to W.G.). A.H.M. was supported by the Australian Research Council as an Australian Professorial Fellow and by the Australian Research Council Centre of Excellence in Plant Energy Biology. H.N. was supported by the Ministry of Education, Culture, Sports, Science and Technology (Grant-in-Aid for Scientific Research no. 21770059).</p></fn><fn><p>The author responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors (<ext-link ext-link-type="uri" xlink:href="www.plantphysiol.org">www.plantphysiol.org</ext-link>) is: Joshua L. Heazlewood (<email>jlheazlewood@lbl.gov</email>).</p></fn><fn id="fn2"><label>[C]</label><p>Some figures in this article are displayed in color online but in black and white in the print edition.</p></fn><fn id="fn3"><label>[OA]</label><p>Open Access articles can be viewed online without a subscription.</p></fn><fn><p><ext-link ext-link-type="uri" xlink:href="www.plantphysiol.org/cgi/doi/10.1104/pp.110.168195">www.plantphysiol.org/cgi/doi/10.1104/pp.110.168195</ext-link></p></fn></author-notes><pmc-comment>Fake ppub date generated by PMC from publisher pub-date/@pub-type='epub-ppub' </pmc-comment>
<pub-date pub-type="ppub"><month>1</month><year>2011</year></pub-date><pub-date pub-type="epub"><day>12</day><month>11</month><year>2010</year></pub-date><pub-date pub-type="pmc-release"><day>12</day><month>11</month><year>2010</year></pub-date><pmc-comment> PMC Release delay is 0 months and 0 days and was based on the
<volume>155</volume><issue>1</issue><fpage>259</fpage><lpage>270</lpage><history><date date-type="received"><day>28</day><month>10</month><year>2010</year></date><date date-type="accepted"><day>10</day><month>11</month><year>2010</year></date></history><permissions><copyright-statement>© 2011 American Society of Plant Biologists</copyright-statement><copyright-year>2011</copyright-year></permissions><abstract><p>Proteomics has become a critical tool in the functional understanding of plant processes at the molecular level. Proteomics-based studies have also contributed to the ever-expanding array of data in modern biology, with many generating Web portals and online resources that contain incrementally expanding and updated information. Many of these resources reflect specialist research areas with significant and novel information that is not currently captured by centralized repositories. The Arabidopsis (<italic>Arabidopsis thaliana</italic>) community is well served by a number of online proteomics resources that hold an abundance of functional information. These sites can be difficult to locate among a multitude of online resources. Furthermore, they can be difficult to navigate in order to identify specific features of interest without significant technical knowledge. Recently, members of the Arabidopsis proteomics community involved in developing many of these resources decided to develop a summary aggregation portal that is capable of retrieving proteomics data from a series of online resources on the fly. The Web portal is known as the MASCP Gator and can be accessed at the following address: <ext-link ext-link-type="uri" xlink:href="http://gator.masc-proteomics.org/">http://gator.masc-proteomics.org/</ext-link>. Significantly, proteomics data displayed at this site retrieve information from the data repositories upon each request. This means that information is always up to date and displays the latest data sets. The site also provides hyperlinks back to the source information hosted at each of the curated databases to facilitate more in-depth analysis of the primary data.</p></abstract></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Asie/explor/AustralieFrV1/Data/Pmc/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001A70 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Pmc/Corpus/biblio.hfd -nk 001A70 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/Asie
|area= AustralieFrV1
|flux= Pmc
|étape= Corpus
|type= RBID
|clé=
|texte=
}}
| This area was generated with Dilib version V0.6.33. |  |